View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21229_low_16 (Length: 214)
Name: NF21229_low_16
Description: NF21229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21229_low_16 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 40276093 - 40275872
Alignment:
| Q |
1 |
atcactttttcattgttttggtttgattttcaagttataataaaatcgtgtgtatatactttgatttataatcatgctggaaattttaatgtgttctatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40276093 |
atcactttttcattgttttggtttgattttcaagttataataaaatcgtgtgtatatactttgatttataatcatgctggaaattttaatgtgttctatt |
40275994 |
T |
|
| Q |
101 |
tgaaaacgata------tttagggttg--tagtctctaattctaacacaatttgatttcaagacttgcattttattggaaaataagtcactaattcattc |
192 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40275993 |
tgaaaacgatattttgttttagggttgtatagtctctaattctaacacaatttgatttcaagacttgcattttattggaaaataagtcactaattcattc |
40275894 |
T |
|
| Q |
193 |
cctttatctaaatattaaagcc |
214 |
Q |
| |
|
|||| ||| ||||||||||||| |
|
|
| T |
40275893 |
ccttgatccaaatattaaagcc |
40275872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University