View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21229_low_2 (Length: 610)
Name: NF21229_low_2
Description: NF21229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21229_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 20 - 602
Target Start/End: Original strand, 33439522 - 33440103
Alignment:
| Q |
20 |
ggagcaaaaacaatcagatactatggtggtcctgctggttgcaaaggcgccaattgtgattggagggaatataacaatgcattgcaagaagcaagatggt |
119 |
Q |
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| T |
33439522 |
ggagcaaaaacaatcagatactatggtggtcctgctggttgcaaaggcgccaattgtgattggagggaatataacaatgcattgcaagaagcaagatggt |
33439621 |
T |
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| Q |
120 |
acgtccaactcttaatttgtataaacttttaaatctcgacttagatcacatgtttaagggattcaaaaataagcgcagacaaaaaaccttgaaaactaaa |
219 |
Q |
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| T |
33439622 |
acgtccaactcttaatttgtataaacttttaaatctcgacttagatcacatgtttaagggattcaaaaataagcacagacaaaaagccttgaaaactaaa |
33439721 |
T |
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| Q |
220 |
gatgtcctcgatttttgaccgaaaacaaatatctnnnnnnnnnttcttataaatattattggttgacaaaaaatatgggcccctaagccactaactttga |
319 |
Q |
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| T |
33439722 |
gatgtcctcgagttttgaccgaaaacaaatatctaaaaaaaaatt-ttaaaaatattattggttgacaaaaaatatgggcccctaagcctctgactttga |
33439820 |
T |
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| Q |
320 |
cttaggggctcatatttccgcttatatatggtgtctgttgttttttgcttcgcttttgctagcccgatgcttcaatgttttatatannnnnnnncatttt |
419 |
Q |
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| T |
33439821 |
cttaggggctcatatttccgcttatatacggtgtctattgttttttgcttcgcttttgctagcccgatgcttcaatgttttatattttttttttcatttt |
33439920 |
T |
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| Q |
420 |
aggtatggaactcaagtaatccttgcaaatggagatttcattgtagtaggaggacgtagagcatttagctatgagtacctcccaagaatagaaggccaaa |
519 |
Q |
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| T |
33439921 |
aggtatggaactcaagtaatccttgcaaatggagatttcattgtagtaggaggacgtagagcatttagctatgagtacctcccaagaatagaaggccaaa |
33440020 |
T |
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| Q |
520 |
gacctctaaaaccctatttctttccatttctctatgaaacttcagaccttgaagaaaacaatctttatccttttgttcatctc |
602 |
Q |
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| T |
33440021 |
gacctctaaaaccctatttctttccatttctctatgaaacttcagaccttgaagaaaacaatctttatccttttgttcatctc |
33440103 |
T |
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