View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21229_low_3 (Length: 496)
Name: NF21229_low_3
Description: NF21229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21229_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 16 - 478
Target Start/End: Original strand, 5461316 - 5461778
Alignment:
| Q |
16 |
attatagtgtcgataattttgtcaaacttactgcgatttcaaacatatattttggatcgaaagtaagtttgacaaaatcacgattataaaaactacactt |
115 |
Q |
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| T |
5461316 |
attatagtgtcgataattttgtcaaacttactgcgatttcaaacatatattttggattgaaagtaagtttgacaaaatcacgatgataaaaactacactt |
5461415 |
T |
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| Q |
116 |
taaaattttaacaaaattacagcgttaccgtaaaaaagttatgaaggtcgacttgttttttcatattcgagatcattgacctaataatttactaagaatg |
215 |
Q |
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| T |
5461416 |
taaaattttaacaaaattacagcgttaccgtaaaaaagttatgaaggtagacttgttttttcatattcgagatcattgacctaataatttactaagaatg |
5461515 |
T |
|
| Q |
216 |
gtgtctgcaaacataccatgagatttccaacaccagccattggaaaatgcaaaggtttgctgatcaagtaatttccaccttgaagattaatttgagcacc |
315 |
Q |
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| T |
5461516 |
gtgtctgcaaatataccatgagatttccaacaccagccattggaaaatgcaaaggtttgctgatcaagtaatttccaccttgaagattaatttgagcacc |
5461615 |
T |
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| Q |
316 |
tccaaggtcaattatgccattcatcaaaaaccctttacttggaccttttgcagcatcagctatggcagcaagaagtgcatcagtgctatctgaatttcct |
415 |
Q |
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| T |
5461616 |
tccaaggtcaattatgccattcatcaaaaaccctttacttggaccttttgcagcatcagctatggcagcaagaagtgcatcagtgctatctgaatttcct |
5461715 |
T |
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| Q |
416 |
gttggatcggcaccatatgatgtcacaaggtactcatgtgatttcttcagatcctgcattaac |
478 |
Q |
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| T |
5461716 |
gttggatcggcaccatataatgtcacaaggtactcatgtgatttcttcagatcctgcattaac |
5461778 |
T |
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Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 275 - 447
Target Start/End: Complemental strand, 15159571 - 15159399
Alignment:
| Q |
275 |
ctgatcaagtaatttccaccttgaagattaatttgagcacctccaaggtcaattatgccattcatcaaaaaccctttacttggaccttttgcagcatcag |
374 |
Q |
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||||||| ||||||||||||| ||||||||| || ||||||||||||| | | ||||| | ||||||| | |||| ||||||||| || | ||||| | |
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| T |
15159571 |
ctgatcatataatttccaccttcaagattaatctgtgcacctccaaggttactgatgccttccatcaaatatccttcacttggaccattggttgcatctg |
15159472 |
T |
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| Q |
375 |
ctatggcagcaagaagtgcatcagtgctatctgaatttcctgttggatcggcaccatatgatgtcacaaggta |
447 |
Q |
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| T |
15159471 |
ctatggctgcaagtaatgcttcagtgctatctgaattgcctgttgggtctgcaccataggatgtcacatggta |
15159399 |
T |
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