View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21229_low_5 (Length: 401)
Name: NF21229_low_5
Description: NF21229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21229_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 101 - 391
Target Start/End: Complemental strand, 2562259 - 2561974
Alignment:
| Q |
101 |
actgcttctaataaaatttgcaagttcaatgaaaaatatatannnnnnnnaaaatggacattgttggcattgttactttctaactccccccaccccagcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2562259 |
actgcttctaataaaatttgcaagttcaatgaaaaaaatatttttttt---agatggacattgttggcattgttactttctaactccccccaccccagcc |
2562163 |
T |
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| Q |
201 |
accaagctatccttatatgaaacacaagtacacattcatctgcaacacattatatgagtgcatgttaattacttcttaccattttcagtattgttactct |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
2562162 |
accaagctatccttatatgaaacacaagtacacattcatctgcaacacattatatgagtgcttg----ttacttcttaccattttcagtattgttactct |
2562067 |
T |
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| Q |
301 |
tctagattatttttgtttgcctt--ttatacatatttcttaccattttgagttctgtttggtgtggtgtacatgttacatttgtcgtcctttg |
391 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2562066 |
tctagattatttttgtttgcctttattatacatatttcttaccattttgagttctgtttggtgtggtgtacatgttacatttgtcgtcctttg |
2561974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 2562339 - 2562305
Alignment:
| Q |
20 |
gggtactcggtttacaccaaaaacaagatgtatct |
54 |
Q |
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|||||| |||||||||||||||||||||||||||| |
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| T |
2562339 |
gggtacccggtttacaccaaaaacaagatgtatct |
2562305 |
T |
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