View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21229_low_6 (Length: 391)
Name: NF21229_low_6
Description: NF21229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21229_low_6 |
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| [»] scaffold0188 (1 HSPs) |
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Alignment Details
Target: scaffold0188 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: scaffold0188
Description:
Target: scaffold0188; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 42 - 391
Target Start/End: Complemental strand, 9975 - 9629
Alignment:
| Q |
42 |
caatacatattgcattgtttcaaaatttgtgatgaatattcaattgttccatgtttgtaaagactgaatagtagctacaaacatcattaaattatgagtt |
141 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||| |||| ||||| |||||||||||| |
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| T |
9975 |
caatacatattgcattgtttcaaaatttgtgat--atattcaattgttccttgtt-gtaaagactgaatagtagcttcaaatatcataaaattatgagtt |
9879 |
T |
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| Q |
142 |
gaaagatggatttaattcatatacactgtcagtgtaaaggnnnnnnnatactgtcaatcagtcataatcgtcagatgattaaaaatgtttgactttagtt |
241 |
Q |
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||||||||||||||||||||||||||||||||||||| || |||| |||||| |||||| |||||||||||||||||||| |||| ||||||| |
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| T |
9878 |
gaaagatggatttaattcatatacactgtcagtgtaatggtttttttgtactttcaatcggtcatagtcgtcagatgattaaaaatgattgattttagtt |
9779 |
T |
|
| Q |
242 |
ataattacttctgaagtcacttgatgattggttatggtttgttgacactgtcagtataaaactatttacacaacagtatatataattaaaataatcgaaa |
341 |
Q |
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| T |
9778 |
aaaattacttctaaagtcacttgatgattggttatggtttgttgacactgtcggtataaaactatttacacgactgtatatataattaaactaatcgaaa |
9679 |
T |
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| Q |
342 |
gatatttcctgcaaaaggaaatatttatattattggtcattctcatatgc |
391 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9678 |
gatatgtcctgcaaaaggaaatatttatattattggtcattctcatatgc |
9629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 79 - 179
Target Start/End: Complemental strand, 13638652 - 13638552
Alignment:
| Q |
79 |
attcaattgttccatgtttgtaaagactgaatagtagctacaaacatcat-taaattatgagttgaaagatggatttaattcatatacactgtcagtgta |
177 |
Q |
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| T |
13638652 |
attcaattgttccatgtt-gcaaaatctgaatagttgctacaaatatcatataaattctgaatttaaagattgatttaactcatttacactgtcagtgta |
13638554 |
T |
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| Q |
178 |
aa |
179 |
Q |
| |
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|| |
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| T |
13638553 |
aa |
13638552 |
T |
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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 288
Target Start/End: Original strand, 35169953 - 35170049
Alignment:
| Q |
191 |
actgtcaatcagtcataatcgtcagatgattaaaaatgtttgactttagttataattacttctgaagtcacttgatgattggttatggtttgttgaca |
288 |
Q |
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| T |
35169953 |
actgtcaatcaattgtaatcgttagattattaaagatgtttgactttaatcataactacttctaaagtcac-acatgattggttatgatttgttgaca |
35170049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 193 - 260
Target Start/End: Original strand, 26762849 - 26762916
Alignment:
| Q |
193 |
tgtcaatcagtcataatcgtcagatgattaaaaatgtttgactttagttataattacttctgaagtca |
260 |
Q |
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| T |
26762849 |
tgtcaatcaatcataatcctcagatcagtaaaaacgtttgactttaatcataattacttctaaagtca |
26762916 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 147 - 251
Target Start/End: Complemental strand, 17213855 - 17213752
Alignment:
| Q |
147 |
atggatttaattcatatacactgtcagtgtaaaggnnnnnnnatactgtcaatcagtcataatcgtcagatgattaaaaatgtttgactttagttataat |
246 |
Q |
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|||||||||||||||||||| |||||||||||| | ||||||||||||| ||||||| |||| || ||||||| |||| ||||| | ||||| |
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| T |
17213855 |
atggatttaattcatatacattgtcagtgtaaa-gatagtttatactgtcaatcaatcataattgtcaaatcgttaaaaacgttttactttgatcataat |
17213757 |
T |
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| Q |
247 |
tactt |
251 |
Q |
| |
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||||| |
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| T |
17213756 |
tactt |
17213752 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 180
Target Start/End: Original strand, 12395505 - 12395535
Alignment:
| Q |
150 |
gatttaattcatatacactgtcagtgtaaag |
180 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
12395505 |
gatttaattcatatacactgtcagtgtaaag |
12395535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 261
Target Start/End: Original strand, 39086028 - 39086086
Alignment:
| Q |
203 |
tcataatcgtcagatgattaaaaatgtttgactttagttataattacttctgaagtcac |
261 |
Q |
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||||||| |||| || |||||||||||||| ||| | |||||||||||||| ||||||| |
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| T |
39086028 |
tcataattgtcaaattattaaaaatgtttgtcttcaattataattacttctaaagtcac |
39086086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 247
Target Start/End: Complemental strand, 6761641 - 6761585
Alignment:
| Q |
191 |
actgtcaatcagtcataatcgtcagatgattaaaaatgtttgactttagttataatt |
247 |
Q |
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||||||| ||| ||||||| ||||||| ||||||| ||||||||||| |||||||| |
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| T |
6761641 |
actgtcagtcaatcataattgtcagatcattaaaattgtttgacttttattataatt |
6761585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 15867675 - 15867631
Alignment:
| Q |
194 |
gtcaatcagtcataatcgtcagatgattaaaaatgtttgacttta |
238 |
Q |
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| T |
15867675 |
gtcaatcaatcataatcgtcatatcattaaaactgtttgacttta |
15867631 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 253
Target Start/End: Original strand, 23031645 - 23031702
Alignment:
| Q |
196 |
caatcagtcataatcgtcagatgattaaaaatgtttgactttagttataattacttct |
253 |
Q |
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|||||| |||||||||||| || ||||||||||||| |||||| | | |||||||||| |
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| T |
23031645 |
caatcaatcataatcgtcaaataattaaaaatgtttcactttaatcagaattacttct |
23031702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 177
Target Start/End: Original strand, 5951462 - 5951490
Alignment:
| Q |
149 |
ggatttaattcatatacactgtcagtgta |
177 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
5951462 |
ggatttaattcatatacactgtcagtgta |
5951490 |
T |
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