View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21229_low_8 (Length: 364)
Name: NF21229_low_8
Description: NF21229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21229_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 9 - 343
Target Start/End: Original strand, 18929432 - 18929766
Alignment:
| Q |
9 |
caagaatataaggcgacacacaattcacccgaataccgaatggcccaagctcgatagccgtgtttctcatcagcccaacaacggcgtgctttgaacttgt |
108 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18929432 |
caagaaaataaggcgacacacaattcacccgaataccgaatggcccaagctcgatagccgtgtttctcatcagcccaacaacggcgtgctttgaacttgt |
18929531 |
T |
|
| Q |
109 |
gtaggcatgtggagcacaaccaccaatgcttccaccaacactagctgtgttaattatgctaccccgtcgagcagggatcattacccttgatgcatgtttt |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
18929532 |
gtaggcatgtggagcacaaccaccaatgcttccaccaacactagctgtgttaattatgctaccccgtcgagcagggatcattacccttgctgcatgtttt |
18929631 |
T |
|
| Q |
209 |
gttccaagaaagacgccagtcaagtttactttaatcacatcctcaaattcagataatttgttttcaagtatctttgttttgtttacaccgcttatgccag |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18929632 |
gttccaagaaagacgccagtcaagtttactttaatcacatcctcaaattcagataatttgttttcaagtatctttgttttgtttacaccgcttatgccag |
18929731 |
T |
|
| Q |
309 |
cgttgttaaacatgatatctagtttaccgtacttg |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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| T |
18929732 |
cgttgttaaacatgatatctagtttaccgtacttg |
18929766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 13 - 343
Target Start/End: Original strand, 18934110 - 18934440
Alignment:
| Q |
13 |
aatataaggcgacacacaattcacccgaataccgaatggcccaagctcgatagccgtgtttctcatcagcccaacaacggcgtgctttgaacttgtgtag |
112 |
Q |
| |
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||||||||| ||||||||||||||||||||||| || | ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
18934110 |
aatataaggtgacacacaattcacccgaataccaaaccgtccaagctcgatggccgtgtttctcatcagcccaacaacggcgtgctttgcacttgtgtag |
18934209 |
T |
|
| Q |
113 |
gcatgtggagcacaaccaccaatgcttccaccaacactagctgtgttaattatgctaccccgtcgagcagggatcattacccttgatgcatgttttgttc |
212 |
Q |
| |
|
||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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|
| T |
18934210 |
gcatgtggagcgacaccacctatgcttccacaaacactagctgtgttaattatgctaccccgtcgagcggggatcattacccttgatgcatgctttgttc |
18934309 |
T |
|
| Q |
213 |
caagaaagacgccagtcaagtttactttaatcacatcctcaaattcagataatttgttttcaagtatctttgttttgtttacaccgcttatgccagcgtt |
312 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18934310 |
caagaaagacaccagtcaagtttactttaatcacatcctcaaattcagataatttgttttcaagtatctttgttttgtttacaccgcttatgccagcgtt |
18934409 |
T |
|
| Q |
313 |
gttaaacatgatatctagtttaccgtacttg |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
18934410 |
gttaaacatgatatctagtttaccgtacttg |
18934440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 13 - 348
Target Start/End: Original strand, 18938794 - 18939129
Alignment:
| Q |
13 |
aatataaggcgacacacaattcacccgaataccgaatggcccaagctcgatagccgtgtttctcatcagcccaacaacggcgtgctttgaacttgtgtag |
112 |
Q |
| |
|
||||||||| || ||||||||||||||||||| ||| || ||||| ||||| |||||||||||||||||||| | ||| || |||||||||||||||||| |
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|
| T |
18938794 |
aatataaggtgaaacacaattcacccgaatactgaacggtccaagttcgattgccgtgtttctcatcagccccaaaacagcatgctttgaacttgtgtag |
18938893 |
T |
|
| Q |
113 |
gcatgtggagcacaaccaccaatgcttccaccaacactagctgtgttaattatgctaccccgtcgagcagggatcattacccttgatgcatgttttgttc |
212 |
Q |
| |
|
||||||| ||| |||||| |||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| || ||||||| |
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|
| T |
18938894 |
gcatgtgaagccataccacctatgcttccacaaacactagctgtgttaattatgctacctcgtcgagcggggatcattacccttgatgcgtgctttgttc |
18938993 |
T |
|
| Q |
213 |
caagaaagacgccagtcaagtttactttaatcacatcctcaaattcagataatttgttttcaagtatctttgttttgtttacaccgcttatgccagcgtt |
312 |
Q |
| |
|
|||||||||| ||| |||||| || |||||||| ||||||||||| ||||| |||| ||||||||| |||||||||||| | || |||||| || || |
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|
| T |
18938994 |
caagaaagacaccaaccaagttaacattaatcacttcctcaaattctgataacttgtattcaagtatatttgttttgtttgctcccactatgccggcatt |
18939093 |
T |
|
| Q |
313 |
gttaaacatgatatctagtttaccgtacttggaaat |
348 |
Q |
| |
|
|||||||||||| |||||||| |||||| ||||||| |
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|
| T |
18939094 |
gttaaacatgatgtctagtttgccgtacatggaaat |
18939129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 16 - 347
Target Start/End: Original strand, 18946298 - 18946629
Alignment:
| Q |
16 |
ataaggcgacacacaattcacccgaataccgaatggcccaagctcgatagccgtgtttctcatcagcccaacaacggcgtgctttgaacttgtgtaggca |
115 |
Q |
| |
|
|||||| |||||||||||||| ||||||||| | || ||||||||||| ||||| ||| |||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
18946298 |
ataaggtgacacacaattcactcgaataccgtacggtccaagctcgatggccgtatttttcattagcccaacaacggcgtgctttgaacttgtgtaggca |
18946397 |
T |
|
| Q |
116 |
tgtggagcacaaccaccaatgcttccaccaacactagctgtgttaattatgctaccccgtcgagcagggatcattacccttgatgcatgttttgttccaa |
215 |
Q |
| |
|
|||| ||| |||||| |||| ||||| ||||||||||||||||||||||||||| |||||| | ||| |||||||||| | || ||||||||||| | |
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|
| T |
18946398 |
tgtgaagccacaccacctatgcatccacaaacactagctgtgttaattatgctacctcgtcgaacgggggtcattaccctagcagcgtgttttgttccga |
18946497 |
T |
|
| Q |
216 |
gaaagacgccagtcaagtttactttaatcacatcctcaaattcagataatttgttttcaagtatctttgttttgtttacaccgcttatgccagcgttgtt |
315 |
Q |
| |
|
|||| || || |||||||| | | |||||| || | |||||| |||||||||||||||||||| ||||||||||||| |||| ||||||| |||||||| |
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|
| T |
18946498 |
gaaatacaccggtcaagttaatgtcaatcacttcttgaaattcggataatttgttttcaagtatgtttgttttgtttataccggttatgcctgcgttgtt |
18946597 |
T |
|
| Q |
316 |
aaacatgatatctagtttaccgtacttggaaa |
347 |
Q |
| |
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|||||||||||||| |||||||| ||||||| |
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|
| T |
18946598 |
aaacatgatatctaatttaccgtgtttggaaa |
18946629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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