View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21229_low_9 (Length: 264)

Name: NF21229_low_9
Description: NF21229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21229_low_9
NF21229_low_9
[»] chr7 (11 HSPs)
chr7 (53-138)||(16060364-16060449)
chr7 (53-125)||(9080196-9080268)
chr7 (201-264)||(16060512-16060575)
chr7 (201-264)||(48376787-48376850)
chr7 (53-118)||(48376627-48376692)
chr7 (53-120)||(16069010-16069077)
chr7 (201-264)||(4531802-4531865)
chr7 (201-238)||(9080338-9080375)
chr7 (216-262)||(37945878-37945924)
chr7 (79-120)||(41744134-41744175)
chr7 (201-233)||(37946032-37946064)
[»] scaffold0063 (2 HSPs)
scaffold0063 (53-138)||(28443-28528)
scaffold0063 (201-239)||(28342-28380)
[»] scaffold0091 (3 HSPs)
scaffold0091 (53-138)||(28907-28994)
scaffold0091 (53-125)||(24710-24782)
scaffold0091 (201-264)||(29057-29120)
[»] scaffold0003 (2 HSPs)
scaffold0003 (53-125)||(130623-130695)
scaffold0003 (201-264)||(130795-130858)
[»] chr6 (4 HSPs)
chr6 (53-125)||(14980460-14980532)
chr6 (201-264)||(14989427-14989490)
chr6 (203-264)||(14980315-14980376)
chr6 (201-238)||(10906902-10906939)
[»] chr3 (10 HSPs)
chr3 (53-125)||(16642123-16642195)
chr3 (53-125)||(4712997-4713069)
chr3 (203-264)||(4712852-4712913)
chr3 (204-264)||(16642300-16642360)
chr3 (59-125)||(14062983-14063049)
chr3 (53-125)||(14055222-14055294)
chr3 (201-264)||(14055089-14055152)
chr3 (201-264)||(14062830-14062893)
chr3 (205-264)||(13926901-13926960)
chr3 (53-104)||(14481800-14481851)
[»] chr8 (5 HSPs)
chr8 (53-122)||(23657638-23657707)
chr8 (53-122)||(23658413-23658482)
chr8 (201-264)||(23657751-23657814)
chr8 (201-256)||(23658526-23658581)
chr8 (53-120)||(17862246-17862313)
[»] chr1 (5 HSPs)
chr1 (53-125)||(13882464-13882536)
chr1 (201-264)||(13882288-13882351)
chr1 (201-264)||(51658714-51658777)
chr1 (53-124)||(51658854-51658925)
chr1 (216-264)||(1567118-1567166)
[»] scaffold0218 (2 HSPs)
scaffold0218 (202-264)||(14378-14440)
scaffold0218 (53-133)||(14227-14307)
[»] scaffold0061 (1 HSPs)
scaffold0061 (53-125)||(18099-18171)
[»] scaffold1043 (1 HSPs)
scaffold1043 (53-120)||(1427-1494)
[»] chr4 (1 HSPs)
chr4 (53-120)||(19728447-19728514)
[»] chr5 (3 HSPs)
chr5 (58-120)||(25756783-25756845)
chr5 (58-120)||(25790956-25791018)
chr5 (53-110)||(24832209-24832266)
[»] scaffold1269 (1 HSPs)
scaffold1269 (224-264)||(1-41)
[»] chr2 (1 HSPs)
chr2 (201-264)||(23656513-23656576)


Alignment Details
Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 53 - 138
Target Start/End: Original strand, 16060364 - 16060449
Alignment:
Q  53 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatatttacacaccaccc 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16060364 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatatttacacaccaccc 16060449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 53 - 125
Target Start/End: Original strand, 9080196 - 9080268
Alignment:
Q  53 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  9080196 atgtatattagacaccatcattcaagtcatcatcataattatacgtcatcattctcatcgtcaatatatatat 9080268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 201 - 264
Target Start/End: Original strand, 16060512 - 16060575
Alignment:
Q  201 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatata 264  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  16060512 ctcatcatcactaacatataaacattatcatttctcatcatatttatttaattacatatatata 16060575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 201 - 264
Target Start/End: Original strand, 48376787 - 48376850
Alignment:
Q  201 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatata 264  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48376787 ctcatcatcaataacatataaacattatcatttctcatcgtatttatttaattacatatatata 48376850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 53 - 118
Target Start/End: Original strand, 48376627 - 48376692
Alignment:
Q  53 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaata 118  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  48376627 atgtatattagacaccatcatttaagtcatcatcataattatacgtcatcattctcatagtcaata 48376692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 53 - 120
Target Start/End: Complemental strand, 16069077 - 16069010
Alignment:
Q  53 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatata 120  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||| |||||||||    
T  16069077 atgtatattagacatcatcattcaaatcatcatcataattatacgtcatcattctcatcgtcaatata 16069010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 264
Target Start/End: Complemental strand, 4531865 - 4531802
Alignment:
Q  201 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatata 264  Q
    |||||||||| ||| |||||| |||||| ||||||||| ||||||||||| |||||||||||||    
T  4531865 ctcatcatcaataaaatataagcattattatttctcattgtatttatttatttacatatatata 4531802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 238
Target Start/End: Original strand, 9080338 - 9080375
Alignment:
Q  201 ctcatcatcactaacatataaacattatcatttctcat 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9080338 ctcatcatcactaacatataaacattatcatttctcat 9080375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 262
Target Start/End: Complemental strand, 37945924 - 37945878
Alignment:
Q  216 atataaacattatcatttctcatcgtatttatttaattacatatata 262  Q
    ||||||||||  |||||||| |||||||||||||| |||||||||||    
T  37945924 atataaacatcgtcatttcttatcgtatttatttatttacatatata 37945878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 120
Target Start/End: Original strand, 41744134 - 41744175
Alignment:
Q  79 tcatcatcataattatacgtcgtcattctcatagtcaatata 120  Q
    ||||||||||||||| ||||||||||||||||  ||||||||    
T  41744134 tcatcatcataattagacgtcgtcattctcatcatcaatata 41744175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 233
Target Start/End: Complemental strand, 37946064 - 37946032
Alignment:
Q  201 ctcatcatcactaacatataaacattatcattt 233  Q
    |||||||||||||| ||||||||||||||||||    
T  37946064 ctcatcatcactaaaatataaacattatcattt 37946032  T

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Target: scaffold0063 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 53 - 138
Target Start/End: Complemental strand, 28528 - 28443
Alignment:
Q  53 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatatttacacaccaccc 138  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28528 atgtatattagacaccatcattcaattcatcatcataattatacgtcgtcattctcatagtcaatatatatatttacacaccaccc 28443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 201 - 239
Target Start/End: Complemental strand, 28380 - 28342
Alignment:
Q  201 ctcatcatcactaacatataaacattatcatttctcatc 239  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  28380 ctcatcatcactaacatataaacatcatcatttctcatc 28342  T

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Target: scaffold0091 (Bit Score: 77; Significance: 8e-36; HSPs: 3)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 53 - 138
Target Start/End: Original strand, 28907 - 28994
Alignment:
Q  53 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtca--atatatatatttacacaccaccc 138  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  28907 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatatatttacacaccaccc 28994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 53 - 125
Target Start/End: Original strand, 24710 - 24782
Alignment:
Q  53 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24710 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 24782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 201 - 264
Target Start/End: Original strand, 29057 - 29120
Alignment:
Q  201 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatata 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29057 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatata 29120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 53 - 125
Target Start/End: Original strand, 130623 - 130695
Alignment:
Q  53 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  130623 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 130695  T

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Target: scaffold0003; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 201 - 264
Target Start/End: Original strand, 130795 - 130858
Alignment:
Q  201 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatata 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  130795 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatata 130858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 53 - 125
Target Start/End: Complemental strand, 14980532 - 14980460
Alignment:
Q  53 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14980532 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 14980460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 201 - 264
Target Start/End: Complemental strand, 14989490 - 14989427
Alignment:
Q  201 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatata 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14989490 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatata 14989427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 203 - 264
Target Start/End: Complemental strand, 14980376 - 14980315
Alignment:
Q  203 catcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatata 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14980376 catcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatata 14980315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 10906939 - 10906902
Alignment:
Q  201 ctcatcatcactaacatataaacattatcatttctcat 238  Q
    |||||||||||||| |||||||||||||||||||||||    
T  10906939 ctcatcatcactaaaatataaacattatcatttctcat 10906902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 53 - 125
Target Start/End: Original strand, 16642123 - 16642195
Alignment:
Q  53 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16642123 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 16642195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 53 - 125
Target Start/End: Complemental strand, 4713069 - 4712997
Alignment:
Q  53 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 125  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  4713069 atgtatattagacaccatcattcaagttatcatcataattatacgtcgtcattctcatagtcaatatatatat 4712997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 203 - 264
Target Start/End: Complemental strand, 4712913 - 4712852
Alignment:
Q  203 catcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatata 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4712913 catcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatata 4712852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 204 - 264
Target Start/End: Original strand, 16642300 - 16642360
Alignment:
Q  204 atcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatata 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16642300 atcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatata 16642360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 59 - 125
Target Start/End: Complemental strand, 14063049 - 14062983
Alignment:
Q  59 attagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 125  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  14063049 attagacaccatcattcaagtcatcatcataattatacgtcatcattctcatcgtcaatatatatat 14062983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 53 - 125
Target Start/End: Complemental strand, 14055294 - 14055222
Alignment:
Q  53 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 125  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||    
T  14055294 atgtatattagacatcatcattcaagtcatcatcataattatacgtcatcattatcatcgtcaatatatatat 14055222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 201 - 264
Target Start/End: Complemental strand, 14055152 - 14055089
Alignment:
Q  201 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatata 264  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14055152 ctcattatcactaacatataaacattatcatttctcatcgtatttatttaattacatatgtata 14055089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 201 - 264
Target Start/End: Complemental strand, 14062893 - 14062830
Alignment:
Q  201 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatata 264  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14062893 ctcatcataactaacatataaacattatcatttctcatcgtatttatttaattacatatgtata 14062830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 205 - 264
Target Start/End: Complemental strand, 13926960 - 13926901
Alignment:
Q  205 tcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatata 264  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  13926960 tcatcactaaaatataaacattatcatttctcatcgtatttatttatttaaatatatata 13926901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 14481851 - 14481800
Alignment:
Q  53 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcat 104  Q
    |||||||||||  | |||||||||| |||||||||||||||||| |||||||    
T  14481851 atgtatattaggaatcatcattcaaatcatcatcataattatacatcgtcat 14481800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 53 - 122
Target Start/End: Original strand, 23657638 - 23657707
Alignment:
Q  53 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatata 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  23657638 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtctatatata 23657707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 53 - 122
Target Start/End: Original strand, 23658413 - 23658482
Alignment:
Q  53 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatata 122  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  23658413 atgtatattagacaccatcattcaagtcatcatcataattataagtcgtcattctcatagtctatatata 23658482  T

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Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 201 - 264
Target Start/End: Original strand, 23657751 - 23657814
Alignment:
Q  201 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatata 264  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  23657751 ctcatcatcactaacatataaacattataatttctcatcgtatttatttaattacatatatata 23657814  T

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Target: chr8; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 201 - 256
Target Start/End: Original strand, 23658526 - 23658581
Alignment:
Q  201 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattaca 256  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  23658526 ctcatcatcactaacatataaacattataatttctcatcgtatttatttaattaca 23658581  T

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Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 53 - 120
Target Start/End: Complemental strand, 17862313 - 17862246
Alignment:
Q  53 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatata 120  Q
    |||||||||||||| |||||||||| |||||||||||||||||| |  |||||||||| |||||||||    
T  17862313 atgtatattagacatcatcattcaaatcatcatcataattataccttatcattctcatcgtcaatata 17862246  T

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Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 53 - 125
Target Start/End: Complemental strand, 13882536 - 13882464
Alignment:
Q  53 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  13882536 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcattgtctatatatatat 13882464  T

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Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 201 - 264
Target Start/End: Complemental strand, 13882351 - 13882288
Alignment:
Q  201 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatata 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13882351 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatata 13882288  T

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Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 201 - 264
Target Start/End: Complemental strand, 51658777 - 51658714
Alignment:
Q  201 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatata 264  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  51658777 ctcatcatcactaacatataaatattatcatttctcatcgtatttatttaattacatatatata 51658714  T

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Target: chr1; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 53 - 124
Target Start/End: Complemental strand, 51658925 - 51658854
Alignment:
Q  53 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatata 124  Q
    |||||||||||| | |||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  51658925 atgtatattagatatcatcgttcaagtcatcatcataattatacgtcatcattctcatcgtcaatatatata 51658854  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 1567166 - 1567118
Alignment:
Q  216 atataaacattatcatttctcatcgtatttatttaattacatatatata 264  Q
    ||||||| ||| ||||||||||||||||||||||  |||||||||||||    
T  1567166 atataaatattgtcatttctcatcgtatttatttgtttacatatatata 1567118  T

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Target: scaffold0218 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 202 - 264
Target Start/End: Original strand, 14378 - 14440
Alignment:
Q  202 tcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatata 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14378 tcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatata 14440  T

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Target: scaffold0218; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 53 - 133
Target Start/End: Original strand, 14227 - 14307
Alignment:
Q  53 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatatttacacac 133  Q
    |||||||||||||||||||||  |||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||    
T  14227 atgtatattagacaccatcatataagtcatcatcataattatacgtcatcattgtcatagtcaatatatatatatacacac 14307  T

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Target: scaffold0061 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 53 - 125
Target Start/End: Complemental strand, 18171 - 18099
Alignment:
Q  53 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 125  Q
    |||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  18171 atgtatattagataccatcattcaagtcatcatcataatcatacttcgtcattctcatagtcaatatatatat 18099  T

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Target: scaffold1043 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 53 - 120
Target Start/End: Complemental strand, 1494 - 1427
Alignment:
Q  53 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatata 120  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||  |||||||||| |||||||||    
T  1494 atgtatattagacatcatcattcaaatcatcatcataattatacgttatcattctcatcgtcaatata 1427  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 120
Target Start/End: Complemental strand, 19728514 - 19728447
Alignment:
Q  53 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatata 120  Q
    |||||||||||||| |||||||||| |||||||||||||||||| |  |||||||||| || ||||||    
T  19728514 atgtatattagacatcatcattcaaatcatcatcataattatactttatcattctcatcgttaatata 19728447  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 120
Target Start/End: Complemental strand, 25756845 - 25756783
Alignment:
Q  58 tattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatata 120  Q
    |||| |||| |||||||||| ||||||||||||||||| ||| |||||||||| |||||||||    
T  25756845 tatttgacatcatcattcaaatcatcatcataattataagtcatcattctcatcgtcaatata 25756783  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 120
Target Start/End: Original strand, 25790956 - 25791018
Alignment:
Q  58 tattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatata 120  Q
    |||| |||| |||||||||| ||||||||||||||||| ||| |||||||||| |||||||||    
T  25790956 tattcgacatcatcattcaaatcatcatcataattataagtcatcattctcatcgtcaatata 25791018  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 110
Target Start/End: Complemental strand, 24832266 - 24832209
Alignment:
Q  53 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcat 110  Q
    |||||||||||  | |||||||||| |||||||||||||||||| || ||||||||||    
T  24832266 atgtatattaggaatcatcattcaaatcatcatcataattatacatcatcattctcat 24832209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1269 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold1269
Description:

Target: scaffold1269; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 1 - 41
Alignment:
Q  224 attatcatttctcatcgtatttatttaattacatatatata 264  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  1 attatcatttctcatcgtatttatttaattacatatgtata 41  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 201 - 264
Target Start/End: Complemental strand, 23656576 - 23656513
Alignment:
Q  201 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatata 264  Q
    ||||| |||| ||| ||||||| ||||||||||||||| ||||||||||| || ||||||||||    
T  23656576 ctcattatcattaaaatataaatattatcatttctcattgtatttatttactttcatatatata 23656513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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