View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2122_high_2 (Length: 539)
Name: NF2122_high_2
Description: NF2122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2122_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 5 - 215
Target Start/End: Complemental strand, 49580690 - 49580481
Alignment:
| Q |
5 |
taatgctaaatatcacgataaatcttcttatgaaacaatcacgactaaaaccatttcctgcttttattccatcaaatccaaaattaaagtgataaaaagt |
104 |
Q |
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| T |
49580690 |
taatgctaaatatcacgataaatcttccc-tgaaacaatcacgactaaaaccatttcctgcttttattccatcaaatccaaaattaaagtgataaaaagt |
49580592 |
T |
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| Q |
105 |
agtgttctcatttccttttaaactaaaaaacacgcttcttcgtgataaagagtttcactatataacattgctctttacaaaattatctttaattaatatt |
204 |
Q |
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| T |
49580591 |
agtgttctcatttccttttaaactaaaaaacacgcttcttcgtgataaagagtttcactatataacattgctctttacaaaattatctttaattaatatt |
49580492 |
T |
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| Q |
205 |
atgagatacat |
215 |
Q |
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| T |
49580491 |
atgagatacat |
49580481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 248 - 526
Target Start/End: Complemental strand, 49580442 - 49580182
Alignment:
| Q |
248 |
aactaggaagagacataatagaaaaatcaacgttgattaatatgtcattcgtattgaaaaatgacatatacgttttttaatgacaaaatgtaagtatgtt |
347 |
Q |
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| T |
49580442 |
aactaggaagagacataatagaaaaatcaacgtcgattaatatgtcattaatattgaaaaatgacatatacgttttttaataacaaaatgtaagtatgtt |
49580343 |
T |
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| Q |
348 |
atttgttatgttaatttttctccttccgcttgaaccacatacactccaactctttaacctttaattcaaactagttgaactacttaacccctaaaatgtc |
447 |
Q |
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| T |
49580342 |
atttgttatgttaatttttttcgttccgcttgaatcatatac-ctccaactctttaacctttaattcaaactagttgaactacttaaccc--aaaatgtc |
49580246 |
T |
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| Q |
448 |
attagtattattaaataaattcttgtcgtaaatattgattttgacaaacaaataaagttggcttctaaggttccgtttg |
526 |
Q |
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| T |
49580245 |
attagta---------------ttgttgtaaatattgattttgacaaacaaataaagttggcttctaagcttccgtttg |
49580182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 320 - 368
Target Start/End: Original strand, 23149860 - 23149907
Alignment:
| Q |
320 |
ttttttaatgacaaaatgtaagtatgttatttgttatgttaatttttct |
368 |
Q |
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| T |
23149860 |
ttttttaatgacaaa-tgttagtatgttaattgttatgttattttttct |
23149907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 320 - 366
Target Start/End: Complemental strand, 27446719 - 27446674
Alignment:
| Q |
320 |
ttttttaatgacaaaatgtaagtatgttatttgttatgttaattttt |
366 |
Q |
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| T |
27446719 |
ttttttaatgacaaa-tgttagtatgttatttgttatgtttattttt |
27446674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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