View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2122_high_3 (Length: 499)
Name: NF2122_high_3
Description: NF2122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2122_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-150; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 18 - 319
Target Start/End: Original strand, 36457623 - 36457924
Alignment:
| Q |
18 |
cctgtggttcatctgctgcagcataatgtgtctttatggggagtgaaaaacaaaaggctcgctcggtctgttgttgtggtgagcggttgtttgatctcta |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
36457623 |
cctgtggttcatctgctgcagcataatgtgtctttatggggagtgaaaaacaaaaggctcgctcggtctgttgttgtggtgagcggttgtttggtctcta |
36457722 |
T |
|
| Q |
118 |
tggattgctagaaataatataatttttatggacagtattcctaatgtgttcaatctcttagttggaaatggatgtcatcgaaaataggtagcagaccgaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
36457723 |
tggattgctagaaataatataatttttatggacagtattcctaatgtgttcaatctcttagttggaaatgaatgtcgtcgaaaataggtagcagaccgaa |
36457822 |
T |
|
| Q |
218 |
aatgacattctgcggctggagtttatgctatttagaatgttatagaagttgaacattgtgtattggggttgagtacctcatgtactcatttgcatcttat |
317 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
36457823 |
aatgacattctctggctggagtttatgctatttagaatgttataaaagttgaacattgtgtattggggttgagtaccttatgtactcatatgcatcttat |
36457922 |
T |
|
| Q |
318 |
tt |
319 |
Q |
| |
|
|| |
|
|
| T |
36457923 |
tt |
36457924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 320 - 482
Target Start/End: Original strand, 36458064 - 36458208
Alignment:
| Q |
320 |
ttattttgaattagagcttgctataaattatttctatcacctaggaggagtatgccattggttggataataggctttcactttatgtggctctctatttc |
419 |
Q |
| |
|
|||||| || ||||||||| ||| |||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36458064 |
ttatttcgacttagagctt-ctacaaattacttgtatcacctaggaggagcatgccattggttggataataggctttcactttatgtggctctctat--- |
36458159 |
T |
|
| Q |
420 |
attcaagtttctaattcatgataagctttagagaaactaaagtagtaatatagacattaaagt |
482 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36458160 |
--------------ttcatgataagctttagagaaactaaagtagtaatatagacattaaagt |
36458208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 86 - 165
Target Start/End: Complemental strand, 11628456 - 11628377
Alignment:
| Q |
86 |
tgttgttgtggtgagcggttgtttgatctctatggattgctagaaataatataatttttatggacagtattcctaatgtg |
165 |
Q |
| |
|
||||||||| | ||| ||||||||| ||||||| ||||||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
11628456 |
tgttgttgttgggagaggttgtttggtctctatatattgctagaaataatataatttttatggacaatatttctaatgtg |
11628377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University