View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2122_high_6 (Length: 298)
Name: NF2122_high_6
Description: NF2122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2122_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 9490279 - 9490570
Alignment:
| Q |
1 |
ttggaagagttgtttaaacctttgttacaagatgaagtatccatgtaaagtggagaattaattgaagctgcacagcttataaatgctatggtttctaagt |
100 |
Q |
| |
|
|||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9490279 |
ttggaagagttgatcaatcctttgttacaagatgaagtatccatgtaaagtggagaattaattgaagctgcacagcttataaatgctatggtttctaagt |
9490378 |
T |
|
| Q |
101 |
tattagtatctaacaagctataaggtttatcagtggtgaagttttcatttgttaaagtgtatagaggaattgaagaacaaatttctttgttcagacctga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
9490379 |
tattagtatctaacaagctataaggtttatcagtggtgaagttttcatttgttaaagtgtatagaggaattgaagagcaattttctttgttcagacctga |
9490478 |
T |
|
| Q |
201 |
atctatgatccttattgtggaatttttgtagttgatggattctacaaagtactttccattgtatagatttagtattgtttgattcttctcac |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
9490479 |
atctatgatccttattgtggaatttttgtagttgatggattctacaaagtattttccattgtatagatttagtattgtttgattgttctcac |
9490570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University