View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2122_low_4 (Length: 479)
Name: NF2122_low_4
Description: NF2122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2122_low_4 |
 | |
|
| [»] chr3 (7 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
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|
Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 169 - 479
Target Start/End: Original strand, 24497117 - 24497427
Alignment:
| Q |
169 |
tacttcattagattcaaatcttattgaaacttacaaaggaacaatctaaataagcattttaaagaacaattacatgttctaataacaaatttaaaagcat |
268 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
24497117 |
tacttcattagattcaaatcttgttgaaacttacaaaggaacaatctaaataagcattttaaagaacaattacatgttctaataacaaagttaaaagcat |
24497216 |
T |
|
| Q |
269 |
aatacacataagagggcatcttgtttttcttcatcaacctccgaaaccatatagggttcttccttgtctcttcaaagcatagacaacatccatggcggta |
368 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
24497217 |
aatacacataagagggcttcttgtttttcttcatcaacctccaaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggctgtc |
24497316 |
T |
|
| Q |
369 |
acagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatcacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaac |
468 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
24497317 |
acagtcttcctccttgcgtgctcagtgtatgtaactgcatcacggatcacattttccaagaagatcttcaagacacctctggtttcttcatagatcaatc |
24497416 |
T |
|
| Q |
469 |
cactgattctc |
479 |
Q |
| |
|
||||||||||| |
|
|
| T |
24497417 |
cactgattctc |
24497427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 172 - 479
Target Start/End: Complemental strand, 24982360 - 24982060
Alignment:
| Q |
172 |
ttcattagattcaaatcttattgaaacttacaaaggaacaatctaaataagcattttaaagaacaattacatgttctaataacaaatttaaaagcataat |
271 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||| ||| | ||||| |||||| |
|
|
| T |
24982360 |
ttcattagattcaaatcttgttgaaacttacaaaggaacaatccaaataagcattttaaagaacaatcacatgttcaaattacacagttaaa-gcataaa |
24982262 |
T |
|
| Q |
272 |
acacataagagggcatcttgttt-ttcttcatcaacctccgaaaccatatagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaac |
370 |
Q |
| |
|
||| | | || |||| |||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24982261 |
acagaatatag-------tgttacttcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaac |
24982169 |
T |
|
| Q |
371 |
agtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatcacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaacca |
470 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
24982168 |
agtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatatatcaaacca |
24982069 |
T |
|
| Q |
471 |
ctgattctc |
479 |
Q |
| |
|
||||||||| |
|
|
| T |
24982068 |
ctgattctc |
24982060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 296 - 479
Target Start/End: Complemental strand, 25085235 - 25085052
Alignment:
| Q |
296 |
tcttcatcaacctccgaaaccatatagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtg |
395 |
Q |
| |
|
||||| ||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||| |
|
|
| T |
25085235 |
tcttcttcaacctccaaaaccatagagggttcttccctgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctccttgcgtgctcagtg |
25085136 |
T |
|
| Q |
396 |
tatgtaactgcatcacggatcacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctc |
479 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
25085135 |
tatgtaactgcatcacggatcacattctccaagaagatcttcaagacacctctggtttcttcatatatcaaaccactgattctc |
25085052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 295 - 475
Target Start/End: Original strand, 31825541 - 31825721
Alignment:
| Q |
295 |
ttcttcatcaacctccgaaaccatatagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagt |
394 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||| || |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
31825541 |
ttcttcatcaacctccgaatccatagagggttcttccctgcctcttcaaagcatagacaacatccatcgcggtaactgtcttcctcctagcgtgctcagt |
31825640 |
T |
|
| Q |
395 |
gtatgtaactgcatcacggatcacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgat |
475 |
Q |
| |
|
|||||| || ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
31825641 |
gtatgtgaccgcatcacggatgacattctccaagaagatcttcaagacacctctagtttcttcatagatcaaaccactgat |
31825721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 302 - 479
Target Start/End: Original strand, 24923451 - 24923628
Alignment:
| Q |
302 |
tcaacctccgaaaccatatagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgta |
401 |
Q |
| |
|
||||||||| || ||||| ||||||||||| |||||||||||||||||||||||||||||||| || || ||||||||||| ||||||||||||||||| |
|
|
| T |
24923451 |
tcaacctccaaatccatagagggttcttccctgtctcttcaaagcatagacaacatccatggctgtcactgtcttcctccttgcgtgctcagtgtatgtc |
24923550 |
T |
|
| Q |
402 |
actgcatcacggatcacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctc |
479 |
Q |
| |
|
|| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24923551 |
acagcatcacgaatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctc |
24923628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 300 - 479
Target Start/End: Original strand, 24919875 - 24920054
Alignment:
| Q |
300 |
catcaacctccgaaaccatatagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatg |
399 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||| || ||||||||||||||||| ||||||||||| || || |||||||||||||||||||||||||||| |
|
|
| T |
24919875 |
catcaacctccgaatccatagagggttcttccctgcctcttcaaagcatagacgacatccatggctgtcactgtcttcctcctagcgtgctcagtgtatg |
24919974 |
T |
|
| Q |
400 |
taactgcatcacggatcacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctc |
479 |
Q |
| |
|
| || |||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
24919975 |
tcacagcatcacgaatgacattctctaagaagatcttcaagacacctctggtttcttcatagatcaaaccgctgattctc |
24920054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 296 - 479
Target Start/End: Original strand, 21584582 - 21584765
Alignment:
| Q |
296 |
tcttcatcaacctccgaaaccatatagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtg |
395 |
Q |
| |
|
||||| |||||||||||| ||||| || ||||||||||| |||||||||||||| ||||||||||| || || |||||||||||||| || ||||||||| |
|
|
| T |
21584582 |
tcttcttcaacctccgaatccataaagcgttcttccttgcctcttcaaagcataaacaacatccatagcagtcacagtcttcctccttgcatgctcagtg |
21584681 |
T |
|
| Q |
396 |
tatgtaactgcatcacggatcacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctc |
479 |
Q |
| |
|
|| ||||| |||||||| ||||||||||||||||| ||||| | || ||||| ||||| ||||| |||||||||||||||||| |
|
|
| T |
21584682 |
tacgtaaccgcatcacgaatcacattctccaagaaaatcttaagaactcctcttgtttcctcataaatcaaaccactgattctc |
21584765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 3e-40; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 302 - 478
Target Start/End: Complemental strand, 10575578 - 10575402
Alignment:
| Q |
302 |
tcaacctccgaaaccatatagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgta |
401 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||||||| | || || ||||||||||| || || ||||| |||||||| || ||||||||||| ||| |
|
|
| T |
10575578 |
tcaaccaccgaaaccatagagggttcttccttgtctcttaagcgcgtaaacaacatccatagcagtcacagttttcctcctcgcatgctcagtgtaagta |
10575479 |
T |
|
| Q |
402 |
actgcatcacggatcacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattct |
478 |
Q |
| |
|
|| ||||| | || ||||||||||||||||||||||| |||||||| ||||| ||||||||||| ||||||||||| |
|
|
| T |
10575478 |
acagcatctcttataacattctccaagaagatcttcaacacacctcttgtttcctcatagatcaatccactgattct |
10575402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 304 - 424
Target Start/End: Original strand, 39954838 - 39954958
Alignment:
| Q |
304 |
aacctccgaaaccatatagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaac |
403 |
Q |
| |
|
|||| |||||||| || || || ||||| || ||||| | |||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| |
|
|
| T |
39954838 |
aaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaac |
39954937 |
T |
|
| Q |
404 |
tgcatcacggatcacattctc |
424 |
Q |
| |
|
|||||||| ||||||||||| |
|
|
| T |
39954938 |
agcatcacgaatcacattctc |
39954958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 351 - 475
Target Start/End: Complemental strand, 354547 - 354422
Alignment:
| Q |
351 |
acaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatcacattctccaagaagatcttcaagacacctctgg |
450 |
Q |
| |
|
||||||||||| || || | |||||||||||| || ||||||||||| ||||| ||||||| ||| |||||| |||||| |||||||| || ||||| |
|
|
| T |
354547 |
acaacatccatagcagtcagagtcttcctccttgcatgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacactcctctta |
354448 |
T |
|
| Q |
451 |
tttcttcataga-tcaaaccactgat |
475 |
Q |
| |
|
|||| ||||||| | ||||||||||| |
|
|
| T |
354447 |
tttcctcatagattaaaaccactgat |
354422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 475
Target Start/End: Complemental strand, 10580893 - 10580805
Alignment:
| Q |
387 |
tgctcagtgtatgtaactgcatcacggatcacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgat |
475 |
Q |
| |
|
||||||||||| ||||| |||||| | ||| ||||| |||||| |||||||| | ||||| |||| |||||||||||||||||||| |
|
|
| T |
10580893 |
tgctcagtgtaagtaacagcatcaagaatcttattctgcaagaaaatcttcaacagtcctcttatttcctcatagatcaaaccactgat |
10580805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 296 - 479
Target Start/End: Original strand, 14261017 - 14261200
Alignment:
| Q |
296 |
tcttcatcaacctccgaaaccatatagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtg |
395 |
Q |
| |
|
||||| |||||||||||||||||| | || ||||||||||||||||| ||||| ||||||||||| || ||||| ||||||||||| || || ||||| |
|
|
| T |
14261017 |
tcttcttcaacctccgaaaccatacaaagtccttccttgtctcttcaacgcataaacaacatccatagcagtaaccgtcttcctcctcgcatgttcagta |
14261116 |
T |
|
| Q |
396 |
tatgtaactgcatcacggatcacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctc |
479 |
Q |
| |
|
|| ||||| ||||| | ||||||||||||||||| |||||||| ||||| | ||||||||||| ||||| || ||||||||| |
|
|
| T |
14261117 |
tacgtaacagcatctcttatcacattctccaagaaaatcttcaacacaccgcgagtttcttcataaatcaacccgctgattctc |
14261200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 327 - 469
Target Start/End: Complemental strand, 41027738 - 41027596
Alignment:
| Q |
327 |
cttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatcacattctcca |
426 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||| || ||||||||||| |||||||||||||| ||||| ||||| |||||||| || |||||||||| |
|
|
| T |
41027738 |
cttccttgtctcttcaatgcataaacaacatccatagcagtaacagtctttctcctagcgtgctctgtgtaagtaacagcatcacgaataacattctcca |
41027639 |
T |
|
| Q |
427 |
agaagatcttcaagacacctctggtttcttcatagatcaaacc |
469 |
Q |
| |
|
| ||||||||||| || || | || ||||| ||||||||||| |
|
|
| T |
41027638 |
aaaagatcttcaacacgccacgtgtctcttcgtagatcaaacc |
41027596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 321 - 475
Target Start/End: Complemental strand, 22898725 - 22898571
Alignment:
| Q |
321 |
agggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatcacat |
420 |
Q |
| |
|
||||||||||| |||||||| | ||||| || |||||||| || ||||| |||||||| ||||||||||||||||| || || ||||| | ||||||| |
|
|
| T |
22898725 |
agggttcttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctctaatcacat |
22898626 |
T |
|
| Q |
421 |
tctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgat |
475 |
Q |
| |
|
||||||| || |||||||| || || | || || ||||| |||||||||||||| |
|
|
| T |
22898625 |
tctccaaaaatatcttcaacacgccacgtgtctcctcataaatcaaaccactgat |
22898571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 321 - 475
Target Start/End: Complemental strand, 22950393 - 22950239
Alignment:
| Q |
321 |
agggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatcacat |
420 |
Q |
| |
|
||||||||||| |||||||| | ||||| || |||||||| || ||||| |||||||| ||||||||||||||||| || || ||||| | ||||||| |
|
|
| T |
22950393 |
agggttcttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctctaatcacat |
22950294 |
T |
|
| Q |
421 |
tctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgat |
475 |
Q |
| |
|
||||||| || |||||||| || || | || || ||||| |||||||||||||| |
|
|
| T |
22950293 |
tctccaaaaatatcttcaacacgccacgtgtctcctcataaatcaaaccactgat |
22950239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 475
Target Start/End: Complemental strand, 53328903 - 53328732
Alignment:
| Q |
304 |
aacctccgaaaccatatagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaac |
403 |
Q |
| |
|
|||| |||||||| || || || ||||| || ||||| | ||| || ||||||||||| || ||||||||||| | | ||| ||||| |||||||| || |
|
|
| T |
53328903 |
aacccccgaaaccgtaaagagtccttccctgcctcttgagagcgtaaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtatgtgac |
53328804 |
T |
|
| Q |
404 |
tgcatcacggatcacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgat |
475 |
Q |
| |
|
|||||||| ||||||||||| | |||||||| | || || | |||||||||||||| || |||||||| |
|
|
| T |
53328803 |
agcatcacgaatcacattctcaagaaagatcttgagaacgccacgagtttcttcatagattaagccactgat |
53328732 |
T |
|
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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 475
Target Start/End: Original strand, 26358549 - 26358712
Alignment:
| Q |
312 |
aaaccatatagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatcac |
411 |
Q |
| |
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|
| T |
26358549 |
aaaccataaagggtccttccttgcctcttgagcgcataaacaacatccatagcagtaactgttttgcgacgagcatgttcagtgtaagtgacagcatcac |
26358648 |
T |
|
| Q |
412 |
ggatcacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgat |
475 |
Q |
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| || |||||||| | || ||||| | ||||| | |||||||||||||||| ||||||||| |
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|
| T |
26358649 |
gaataacattctcaagaaatatcttgagaacaccacgagtttcttcatagatcagaccactgat |
26358712 |
T |
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