View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2122_low_5 (Length: 367)
Name: NF2122_low_5
Description: NF2122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2122_low_5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 36 - 367
Target Start/End: Complemental strand, 52875083 - 52874752
Alignment:
| Q |
36 |
atgaagaaaaataatagcacaagaaacgtagaagccgtaatgacaaagatgatagccccctttgtatctatgttaacaatttcgttttcagaatcatttg |
135 |
Q |
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| T |
52875083 |
atgaagaaaaataatagcacaagaaacgtagaagccgtaatgacaaagatgatagccccctttgtatctatgttaacaatttcgttttcagaatcatttg |
52874984 |
T |
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| Q |
136 |
tcactctttcagccggggaagatccctaaaataaaaaagaaacacacatatataaactaacatcctttaagattcagtagtaaaataactaaataaactt |
235 |
Q |
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| T |
52874983 |
tcactctttcagcagtggaagatccctaaaataaaaaagaaacacacatatataaactaacatcctttaagattcagtagtaaaataactaaataaactt |
52874884 |
T |
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| Q |
236 |
gcaatcattaaactaggtgaacacaagatgagaataagacttgcttggtgaataataactctagtctaaggcctaatagttagctgattgcaatggttga |
335 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||| |
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| T |
52874883 |
gcaatcattaaactaggtgaacacaagatgagaataagacttgcttggtgaataataactctagtataagacctaatagttagctgattgcaatgattga |
52874784 |
T |
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| Q |
336 |
tgtctaatcatatagaaggtagtcaaagatga |
367 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
52874783 |
tgtctaatcatatagaaggtagtcaaagatga |
52874752 |
T |
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