View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2122_low_6 (Length: 317)
Name: NF2122_low_6
Description: NF2122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2122_low_6 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 42682419 - 42682729
Alignment:
| Q |
1 |
atcaatcttgaaaaaacatctagcactctccggtttgtagcatcatttatttaaaatcagtatatgcgccttcaaattataacagaacattgacaactgt |
100 |
Q |
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| T |
42682419 |
atcaatcgtgaaaaaacatctagcactctccagtttgtagcatcatttatttaaaatcagtatatgcgccttcgaattataacagaacattgacaactgt |
42682518 |
T |
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| Q |
101 |
atatgtaagaattctgatatgccaaaattcccttttgcagatgttatactattggctaaacaaaataatttttcnnnnnnnnnnnnnntcactttcctaa |
200 |
Q |
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| T |
42682519 |
atatgtaagaattctgatacgccaaaattcccttttgtagatgttatattattggttaaccaaaataactttt------aaaaaaaagtcggtttcctaa |
42682612 |
T |
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| Q |
201 |
ctgcaccgtagaagtgtcttagtttcatagcttgaaacttgtaactttttgccaaaatctagtttgaattgtgtataatttaagttgaaattagttctgg |
300 |
Q |
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|||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42682613 |
ctgcaccgtagaagtgccttagttttatagcttaaaacttgtaactttttgccaaaatctagtttgaattgtgtataatttaagttgaaattagttctgg |
42682712 |
T |
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| Q |
301 |
tattgattcctattatt |
317 |
Q |
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| T |
42682713 |
tattgattcctattatt |
42682729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 33 - 173
Target Start/End: Original strand, 3859248 - 3859389
Alignment:
| Q |
33 |
gtttgtagcatcatttatttaaaatcagta-tatgcgccttcaaattataacagaacattgacaactgtatatgtaagaattctgatatgccaaaattcc |
131 |
Q |
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| T |
3859248 |
gtttgtagcataatttatttaaaatcagtaataggagccttcaaattataacagaacattgacaacggaatatataagaattctgatacaccaaaattcc |
3859347 |
T |
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| Q |
132 |
cttttgcagatgttatactattggctaaacaaaataattttt |
173 |
Q |
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| T |
3859348 |
cttctgcagatgttatactattggctaaacaaaataactttt |
3859389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 33 - 133
Target Start/End: Complemental strand, 44595845 - 44595743
Alignment:
| Q |
33 |
gtttgtagcatcatttatttaaaatcagtat-atgcgccttcaaattataacagaacattgacaactgtatatgtaagaattctgatatg-ccaaaattc |
130 |
Q |
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|||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||| |||||||| |||||||||||||| | ||||||||| |
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| T |
44595845 |
gtttgtagcatcatttatttaaaatcagtaacaggagccttcaaattataacagaacattgacatctgtatatataagaattctgatacgcccaaaattc |
44595746 |
T |
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| Q |
131 |
cct |
133 |
Q |
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| T |
44595745 |
cct |
44595743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 172
Target Start/End: Original strand, 15651470 - 15651499
Alignment:
| Q |
143 |
gttatactattggctaaacaaaataatttt |
172 |
Q |
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| T |
15651470 |
gttatactattggctaaacaaaataatttt |
15651499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 112
Target Start/End: Original strand, 30578783 - 30578857
Alignment:
| Q |
39 |
agcatcatttatttaaaatcagta-tatgcgccttcaaattataacagaacattgacaactgtatatgtaagaat |
112 |
Q |
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| T |
30578783 |
agcatcatatatttaaaatcagtaataggagccttcaaattataacagaatgttgacaattgtaaatataagaat |
30578857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 143 - 174
Target Start/End: Original strand, 15964414 - 15964445
Alignment:
| Q |
143 |
gttatactattggctaaacaaaataatttttc |
174 |
Q |
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| T |
15964414 |
gttatactattggctaaacaaaataatttttc |
15964445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 173
Target Start/End: Original strand, 66085 - 66115
Alignment:
| Q |
143 |
gttatactattggctaaacaaaataattttt |
173 |
Q |
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| T |
66085 |
gttatactattggctaaacaaaataattttt |
66115 |
T |
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