View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2123-Insertion-3 (Length: 848)

Name: NF2123-Insertion-3
Description: NF2123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2123-Insertion-3
NF2123-Insertion-3
[»] chr8 (18 HSPs)
chr8 (6-848)||(33124183-33125009)
chr8 (382-451)||(4811588-4811657)
chr8 (468-542)||(885755-885831)
chr8 (347-451)||(22199206-22199309)
chr8 (347-450)||(33357218-33357320)
chr8 (395-455)||(34890642-34890701)
chr8 (382-453)||(16196890-16196961)
chr8 (396-455)||(42449009-42449068)
chr8 (348-430)||(9063160-9063241)
chr8 (268-339)||(30011717-30011790)
chr8 (383-453)||(37713987-37714057)
chr8 (381-455)||(42433627-42433699)
chr8 (350-450)||(168464-168563)
chr8 (349-450)||(4648192-4648291)
chr8 (383-456)||(6375222-6375295)
chr8 (381-450)||(9537913-9537980)
chr8 (381-450)||(11112669-11112736)
chr8 (353-450)||(16888633-16888728)
[»] chr3 (18 HSPs)
chr3 (384-455)||(25743842-25743913)
chr3 (375-455)||(34300696-34300776)
chr3 (384-454)||(40614462-40614532)
chr3 (384-453)||(26966528-26966597)
chr3 (286-337)||(48553064-48553115)
chr3 (355-450)||(41554029-41554122)
chr3 (370-450)||(272239-272317)
chr3 (409-453)||(49340116-49340160)
chr3 (419-504)||(5301513-5301597)
chr3 (536-575)||(33880359-33880398)
chr3 (405-452)||(34227021-34227068)
chr3 (396-450)||(2505393-2505446)
chr3 (370-452)||(17752703-17752785)
chr3 (370-452)||(19054023-19054105)
chr3 (406-451)||(31436316-31436361)
chr3 (346-450)||(39074413-39074516)
chr3 (406-455)||(44611235-44611284)
chr3 (350-450)||(52520679-52520778)
[»] chr1 (18 HSPs)
chr1 (381-453)||(27695811-27695883)
chr1 (479-540)||(11796966-11797028)
chr1 (352-450)||(17333371-17333467)
chr1 (349-451)||(28725992-28726095)
chr1 (345-450)||(9266817-9266921)
chr1 (406-452)||(28557815-28557861)
chr1 (370-450)||(36446414-36446491)
chr1 (387-455)||(6489300-6489368)
chr1 (470-535)||(48611678-48611746)
chr1 (396-451)||(33644422-33644477)
chr1 (278-342)||(45935999-45936065)
chr1 (536-575)||(49364385-49364424)
chr1 (381-455)||(35700734-35700806)
chr1 (381-450)||(3784802-3784869)
chr1 (350-450)||(18043160-18043259)
chr1 (381-450)||(30294470-30294537)
chr1 (419-456)||(34599071-34599108)
chr1 (370-451)||(38595839-38595920)
[»] chr6 (17 HSPs)
chr6 (382-453)||(252405-252476)
chr6 (384-453)||(11633951-11634019)
chr6 (383-506)||(30938952-30939075)
chr6 (384-453)||(11616217-11616285)
chr6 (349-450)||(20897945-20898045)
chr6 (407-456)||(7729494-7729543)
chr6 (370-451)||(22021650-22021731)
chr6 (419-455)||(6802209-6802245)
chr6 (350-450)||(18276704-18276802)
chr6 (347-430)||(23402133-23402216)
chr6 (381-449)||(26879236-26879303)
chr6 (348-450)||(34396616-34396717)
chr6 (386-452)||(11636600-11636665)
chr6 (376-450)||(34477639-34477711)
chr6 (350-450)||(3515764-3515863)
chr6 (362-450)||(11115184-11115271)
chr6 (351-440)||(29451214-29451301)
[»] scaffold0019 (1 HSPs)
scaffold0019 (383-453)||(66430-66500)
[»] chr7 (15 HSPs)
chr7 (381-455)||(34435737-34435811)
chr7 (349-451)||(34556977-34557079)
chr7 (278-339)||(35169995-35170056)
chr7 (406-453)||(22744650-22744697)
chr7 (383-456)||(38022574-38022647)
chr7 (287-339)||(18577487-18577541)
chr7 (347-450)||(24798492-24798593)
chr7 (351-450)||(27456202-27456299)
chr7 (371-450)||(30810675-30810752)
chr7 (395-453)||(41468717-41468775)
chr7 (381-450)||(11686413-11686480)
chr7 (381-450)||(28587939-28588006)
chr7 (384-453)||(29738033-29738102)
chr7 (350-450)||(29993576-29993675)
chr7 (287-337)||(46936999-46937051)
[»] chr4 (11 HSPs)
chr4 (382-455)||(3999468-3999541)
chr4 (396-456)||(19350766-19350826)
chr4 (381-453)||(26493795-26493867)
chr4 (384-455)||(20654707-20654778)
chr4 (352-450)||(32217045-32217142)
chr4 (381-455)||(30799992-30800066)
chr4 (347-450)||(43944502-43944604)
chr4 (376-450)||(28755645-28755717)
chr4 (376-450)||(42898835-42898907)
chr4 (286-324)||(51060251-51060289)
chr4 (287-342)||(33535202-33535254)
[»] chr2 (15 HSPs)
chr2 (372-440)||(16807322-16807390)
chr2 (372-440)||(16846603-16846671)
chr2 (382-455)||(30217647-30217719)
chr2 (396-455)||(40210252-40210311)
chr2 (347-440)||(30486205-30486297)
chr2 (352-450)||(43637165-43637261)
chr2 (350-450)||(561607-561706)
chr2 (384-444)||(15406338-15406396)
chr2 (383-440)||(30834460-30834517)
chr2 (370-451)||(44331758-44331839)
chr2 (347-450)||(26387153-26387255)
chr2 (396-452)||(35506740-35506796)
chr2 (288-339)||(36501984-36502035)
chr2 (381-455)||(3336429-3336505)
chr2 (347-451)||(44854427-44854531)
[»] chr5 (15 HSPs)
chr5 (278-338)||(36261960-36262020)
chr5 (6-64)||(7570551-7570609)
chr5 (712-797)||(7570697-7570782)
chr5 (376-452)||(6042134-6042209)
chr5 (340-450)||(8787327-8787436)
chr5 (287-339)||(16230755-16230809)
chr5 (406-453)||(29571574-29571621)
chr5 (370-440)||(10069988-10070056)
chr5 (346-451)||(14214136-14214242)
chr5 (383-454)||(17534224-17534297)
chr5 (411-453)||(18094040-18094082)
chr5 (352-450)||(34650922-34651018)
chr5 (381-450)||(13661838-13661905)
chr5 (406-455)||(20719330-20719379)
chr5 (385-453)||(25731458-25731524)
[»] scaffold0674 (1 HSPs)
scaffold0674 (376-450)||(7986-8058)
[»] scaffold0549 (1 HSPs)
scaffold0549 (376-450)||(7313-7385)
[»] scaffold1396 (1 HSPs)
scaffold1396 (288-333)||(1330-1375)


Alignment Details
Target: chr8 (Bit Score: 658; Significance: 0; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 658; E-Value: 0
Query Start/End: Original strand, 6 - 848
Target Start/End: Complemental strand, 33125009 - 33124183
Alignment:
Q  6 cagacatacagcaaaacttgttccatagagtattggcttcttaattccttgcaggtaaatattctatatatatatttggaatcttggatactaatacaca 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  33125009 cagacatacagcaaaacttgttccatagagtattggcttcttaattccttgcaggtaaatattctatatatatatttggaatcttggttactaatacaca 33124910  T
Q  106 tgatatgtatttaactttgaaatctagttgtatgacttcatagattggtaaagttaacaaacctattaaaagaccaaatattgtgatatagtagtataca 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33124909 tgatatgtatttaactttgaaatctagttgtatgacttcatagattggtaaagttaacaaacctattaaaagaccaaatattgtgatatagtagtataca 33124810  T
Q  206 taaaggtttatcctacataggaacatttgtattnnnnnnntgtttaattttgatacacctgatgtaaaaaactttacaccatcaacaaatcacaattaat 305  Q
    |||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||| ||||||||||||||||||| ||||              
T  33124809 taaaggtttatcctacataggaacatttgtattaaaaaaatgtttaattttgatacacctgatgt-aaaaactttacaccatcaataaat---------- 33124721  T
Q  306 catatgtgactttagaagtagttatgattaaagttaattttaataagggaaattctaaatggtgccccgaggcagtggttaaggatacttaaaaaggaag 405  Q
        ||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  33124720 ----tgtcac-ttagaagtagttatgattaaagttaattttaataaggaaaattctaaatggtgccccaaggccgtggttaaggatacttaaaaaggaag 33124626  T
Q  406 ttatatagtagtcattgcattgaaaattgtgtaatcaattcataaaaagttnnnnnnntgtcatttttattttataacttccttttttagtatccttaac 505  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||        |||||||||||||||||||||| |||||||||||||||||||    
T  33124625 ttatatagtagttattgcattgaaaattgtgtaatcaatttataaaaagtcaaaaaagtgtcatttttattttataactttcttttttagtatccttaac 33124526  T
Q  506 agtgccccgagacaccggttaacatgacccttttaataatatgataattatgattgattgacaatgtaaatgtaaaaagtatatgaattaaatccttnnn 605  Q
    ||| ||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  33124525 agtaccccgggacaccggttagcattacccttttaataatatgataattatgattgattgacaatgtaaatgtaaaaagtatatgaattaaatccttaaa 33124426  T
Q  606 nnnnntcaatggtttttgaactaaaatacatatcttgattggagctgacataatactatttctctgcaaggtctaactgaaatttggtgtgctatttatc 705  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33124425 aaaaatcaatggtttttgaactaaaatacatatcttgattggagctgacataatactatttctctgcaaggtctaactgaaatttggtgtgctatttatc 33124326  T
Q  706 aatttaaggtgcctattgcaatttctgttacactttttgaagccatatgcttatgcaaaggaactagagtaattgcatcaaggggaaaggaaatcacttg 805  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33124325 aatttaaggtgcctattgcaatttctgttacactttttgaagccatatgcttatgcaaaggaactagagtaattgcatcaaggggaaaggaaatcacttg 33124226  T
Q  806 gaagtttcataagatctgtctttactgcttctgtggaataata 848  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  33124225 gaagtttcataagatctgtctttactgcttctgtggaataata 33124183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 382 - 451
Target Start/End: Original strand, 4811588 - 4811657
Alignment:
Q  382 ggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataaa 451  Q
    ||||||| ||||| |||||| || |||||||||| | ||||||||||||||||| |||| ||||||||||    
T  4811588 ggttaagaatactaaaaaagaaaattatatagtaattattgcattgaaaattgtataattaattcataaa 4811657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 468 - 542
Target Start/End: Original strand, 885755 - 885831
Alignment:
Q  468 atttttattttataacttccttttttagtatccttaac-agtgccccgag-acaccggttaacatgacccttttaat 542  Q
    ||||| |||||| || ||||||||||||  |||||||| | ||||||||| ||||||||||||||||||||||||||    
T  885755 attttcattttaaaatttccttttttaggttccttaaccactgccccgaggacaccggttaacatgacccttttaat 885831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 347 - 451
Target Start/End: Original strand, 22199206 - 22199309
Alignment:
Q  347 aataagggaaattctaaatggtgccccgaggcagtggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattc 446  Q
    ||||||||||||  |||| ||||||| ||| || ||||||||| |||| |||| |||| ||||||||||   |||||||||||| || |||||| |||||    
T  22199206 aataagggaaatgttaaacggtgccctgag-cattggttaaggttactaaaaatggaatttatatagtaactattgcattgaaatttatgtaattaattc 22199304  T
Q  447 ataaa 451  Q
    |||||    
T  22199305 ataaa 22199309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 347 - 450
Target Start/End: Complemental strand, 33357320 - 33357218
Alignment:
Q  347 aataagggaaattctaaatggtgccccgag-gcagtggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaatt 445  Q
    |||||||||||| |||| |||||||||  | ||| |||||||||||| | ||||||||| |||||||||||| | ||||||| |||||||||||| ||||    
T  33357320 aataagggaaatgctaactggtgcccccggagcactggttaaggata-tgaaaaaggaaattatatagtagttaatgcattg-aaattgtgtaattaatt 33357223  T
Q  446 cataa 450  Q
     ||||    
T  33357222 tataa 33357218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 395 - 455
Target Start/End: Complemental strand, 34890701 - 34890642
Alignment:
Q  395 taaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataaaaagt 455  Q
    ||||||| || |||||||||| | ||| |||||||| ||||||||||||||||||||||||    
T  34890701 taaaaagaaaattatatagtatttattacattgaaa-ttgtgtaatcaattcataaaaagt 34890642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 382 - 453
Target Start/End: Complemental strand, 16196961 - 16196890
Alignment:
Q  382 ggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataaaaa 453  Q
    |||||| |||||| |||||| || ||||||| |||| |||  ||||||||||||||||| |||| |||||||    
T  16196961 ggttaaagatactaaaaaagaaaattatataatagttattatattgaaaattgtgtaattaatttataaaaa 16196890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 396 - 455
Target Start/End: Original strand, 42449009 - 42449068
Alignment:
Q  396 aaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataaaaagt 455  Q
    |||| |||| |||||||||||| ||| |||||||||||||||| | ||| ||||||||||    
T  42449009 aaaatggaaattatatagtagttattacattgaaaattgtgtagttaatccataaaaagt 42449068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 348 - 430
Target Start/End: Complemental strand, 9063241 - 9063160
Alignment:
Q  348 ataagggaaattctaaatggtgccccgaggcagtggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaa 430  Q
    ||||||||||| ||||  |||| ||||  ||| |||||||||||| | ||||||||| |||||||||||| | ||||||||||    
T  9063241 ataagggaaatgctaaccggtgtcccggagcactggttaaggata-tgaaaaaggaaattatatagtagttaatgcattgaaa 9063160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 268 - 339
Target Start/End: Original strand, 30011717 - 30011790
Alignment:
Q  268 tgtaaaaaactttacaccatcaacaaatcacaattaatcata--tgtgactttagaagtagttatgattaaagt 339  Q
    ||||||| | |||||||  ||||||||||| ||| |||||||  ||||| ||||||||||||||||||| ||||    
T  30011717 tgtaaaacattttacactgtcaacaaatcaaaatcaatcatatgtgtgattttagaagtagttatgattgaagt 30011790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 383 - 453
Target Start/End: Complemental strand, 37714057 - 37713987
Alignment:
Q  383 gttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataaaaa 453  Q
    |||||||||||| |||||| || ||| ||| |||| ||||||||||||||| |||||| |||  |||||||    
T  37714057 gttaaggatactaaaaaagaaaattacataatagttattgcattgaaaattatgtaattaatctataaaaa 37713987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 381 - 455
Target Start/End: Complemental strand, 42433699 - 42433627
Alignment:
Q  381 tggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataaaaagt 455  Q
    |||||||| ||||| ||||||||| ||||||| |||| | |||||||||| ||||||||| |||| |||||||||    
T  42433699 tggttaagcatact-aaaaaggaaattatataatagttaatgcattgaaa-ttgtgtaattaatttataaaaagt 42433627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 350 - 450
Target Start/End: Original strand, 168464 - 168563
Alignment:
Q  350 aagggaaattctaaatggtgcc-ccgaggcagtggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcat 448  Q
    ||||||||| ||||  |||||| ||| |||| ||||||||| || | ||||||||| |||||||||||| | ||||||| |||||||||||| |||| ||    
T  168464 aagggaaatgctaaccggtgcctccggggcactggttaagggta-tgaaaaaggaaattatatagtagttaatgcattg-aaattgtgtaattaatttat 168561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 349 - 450
Target Start/End: Original strand, 4648192 - 4648291
Alignment:
Q  349 taagggaaattctaaatggtgccccgaggcagtggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcat 448  Q
    |||||||||| ||||  |||| |||| |||| || ||||||||| | ||||||||| |||||||||||| | | ||||| |||||||||||| |||| ||    
T  4648192 taagggaaatgctaaccggtgtcccggggcactgattaaggata-tgaaaaaggaaattatatagtagttaatacattg-aaattgtgtaattaatttat 4648289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 383 - 456
Target Start/End: Complemental strand, 6375295 - 6375222
Alignment:
Q  383 gttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataaaaagtt 456  Q
    |||||||||| | |||||| || ||||||| |||| |||| ||| |||||| |||||| ||| |||||||||||    
T  6375295 gttaaggatattaaaaaagaaaattatataatagttattgtattaaaaattatgtaataaatccataaaaagtt 6375222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 381 - 450
Target Start/End: Complemental strand, 9537980 - 9537913
Alignment:
Q  381 tggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataa 450  Q
    |||||||||||| | ||||||||| |||||||||||| | |||||| ||||||||||||| |||| ||||    
T  9537980 tggttaaggata-tgaaaaaggaaattatatagtagttaatgcatt-aaaattgtgtaattaatttataa 9537913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 381 - 450
Target Start/End: Original strand, 11112669 - 11112736
Alignment:
Q  381 tggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataa 450  Q
    |||||||||||| | ||||||||| |||||||||||| | ||||||| |||||||||||| |||| ||||    
T  11112669 tggttaaggata-tgaaaaaggaaattatatagtagttaatgcattg-aaattgtgtaattaatttataa 11112736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 353 - 450
Target Start/End: Complemental strand, 16888728 - 16888633
Alignment:
Q  353 ggaaattctaaatggtgccccgaggcagtggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataa 450  Q
    |||||| ||||  ||||||||  ||||  ||||||||||| | ||||||||| |||||||||||| | ||||||| |||||||||||| |||| ||||    
T  16888728 ggaaatgctaaccggtgcccccgggcacaggttaaggata-tgaaaaaggaaattatatagtagttaatgcattg-aaattgtgtaattaatttataa 16888633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 6e-18; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 384 - 455
Target Start/End: Original strand, 25743842 - 25743913
Alignment:
Q  384 ttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataaaaagt 455  Q
    ||||||||||| ||||||||| |||||||||| | |||||||| ||||||||||||| ||||||||||||||    
T  25743842 ttaaggatactaaaaaaggaaattatatagtaattattgcattaaaaattgtgtaattaattcataaaaagt 25743913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 375 - 455
Target Start/End: Complemental strand, 34300776 - 34300696
Alignment:
Q  375 aggcagtggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataaaaagt 455  Q
    ||||| |||||||||||| | ||||| ||| ||||| |||||| ||| |||||||| ||||||||||||||||||||||||    
T  34300776 aggcactggttaaggataataaaaaatgaaattatacagtagttattacattgaaagttgtgtaatcaattcataaaaagt 34300696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 384 - 454
Target Start/End: Original strand, 40614462 - 40614532
Alignment:
Q  384 ttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataaaaag 454  Q
    ||||||||||| |||| |||| |||||||||||| |||||||||||||||||||||  ||||||| |||||    
T  40614462 ttaaggatactaaaaagggaaattatatagtagttattgcattgaaaattgtgtaactaattcattaaaag 40614532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 384 - 453
Target Start/End: Original strand, 26966528 - 26966597
Alignment:
Q  384 ttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataaaaa 453  Q
    ||||||||||| ||||| ||| |||||||||||| ||||||||||||||||| |||| ||| ||||||||    
T  26966528 ttaaggatactaaaaaaagaaattatatagtagttattgcattgaaaattgtttaattaatccataaaaa 26966597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 286 - 337
Target Start/End: Original strand, 48553064 - 48553115
Alignment:
Q  286 atcaacaaatcacaattaatcatatgtgactttagaagtagttatgattaaa 337  Q
    |||||||||||||||| ||||||||||||||||||||||  |||||||||||    
T  48553064 atcaacaaatcacaatcaatcatatgtgactttagaagtttttatgattaaa 48553115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 355 - 450
Target Start/End: Complemental strand, 41554122 - 41554029
Alignment:
Q  355 aaattctaaatggtgccccgaggcagtggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataa 450  Q
    |||| |||| ||||||||||  ||| |||||||||||| | ||||||||| |||||||||||| | ||||||| |||||||||||| |||| ||||    
T  41554122 aaatgctaactggtgccccggtgcactggttaaggata-tgaaaaaggaaattatatagtagttaatgcattg-aaattgtgtaattaatttataa 41554029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 370 - 450
Target Start/End: Original strand, 272239 - 272317
Alignment:
Q  370 ccccgaggcagtggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataa 450  Q
    ||||| |||| |||||||||||| | ||||||||| |||||||||||| | ||||||| |||||||||||| |||| ||||    
T  272239 ccccggggcactggttaaggata-tgaaaaaggaaattatatagtagttaatgcattg-aaattgtgtaattaatttataa 272317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 409 - 453
Target Start/End: Original strand, 49340116 - 49340160
Alignment:
Q  409 tatagtagtcattgcattgaaaattgtgtaatcaattcataaaaa 453  Q
    ||||||||| |||||||||||||||||||||| ||| ||||||||    
T  49340116 tatagtagttattgcattgaaaattgtgtaattaatccataaaaa 49340160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 419 - 504
Target Start/End: Original strand, 5301513 - 5301597
Alignment:
Q  419 attgcattgaaaattgtgtaatcaattcataaaaagttnnnnnnntgtcatttttattttataacttccttttttagtatccttaa 504  Q
    ||||||||||||||||| |||||||| |||||||||||       ||||||||||| ||| |||||| |||||||  |||||||||    
T  5301513 attgcattgaaaattgtataatcaatccataaaaagtt-aaaaagtgtcatttttaatttctaactttcttttttgatatccttaa 5301597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 536 - 575
Target Start/End: Complemental strand, 33880398 - 33880359
Alignment:
Q  536 ttttaataatatgataattatgattgattgacaatgtaaa 575  Q
    |||||||||| ||||| |||||||||||||||||||||||    
T  33880398 ttttaataatttgatagttatgattgattgacaatgtaaa 33880359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 405 - 452
Target Start/End: Complemental strand, 34227068 - 34227021
Alignment:
Q  405 gttatatagtagtcattgcattgaaaattgtgtaatcaattcataaaa 452  Q
    |||||||| |||| ||||||||||||||||| || |||||||||||||    
T  34227068 gttatataatagttattgcattgaaaattgtatagtcaattcataaaa 34227021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 396 - 450
Target Start/End: Original strand, 2505393 - 2505446
Alignment:
Q  396 aaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataa 450  Q
    ||||||||| |||||||||||| | ||||||| |||||||||||| |||||||||    
T  2505393 aaaaaggaaattatatagtagttagtgcattg-aaattgtgtaattaattcataa 2505446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 370 - 452
Target Start/End: Original strand, 17752703 - 17752785
Alignment:
Q  370 ccccgaggcagtggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataaaa 452  Q
    ||||| |||| |||||||||||||| |||  | || | |||||||| | ||||| |||||||||||||||| |||| ||||||    
T  17752703 ccccggggcactggttaaggatactaaaatggtaaatcatatagtatttattgcgttgaaaattgtgtaattaatttataaaa 17752785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 370 - 452
Target Start/End: Original strand, 19054023 - 19054105
Alignment:
Q  370 ccccgaggcagtggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataaaa 452  Q
    ||||| |||| |||||||||||||| |||  | || | |||||||| | ||||| |||||||||||||||| |||| ||||||    
T  19054023 ccccggggcactggttaaggatactaaaatggtaaatcatatagtatttattgcgttgaaaattgtgtaattaatttataaaa 19054105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 406 - 451
Target Start/End: Original strand, 31436316 - 31436361
Alignment:
Q  406 ttatatagtagtcattgcattgaaaattgtgtaatcaattcataaa 451  Q
    |||||||||| | |||||||| ||||||||||||| ||||||||||    
T  31436316 ttatatagtaattattgcattaaaaattgtgtaattaattcataaa 31436361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 346 - 450
Target Start/End: Original strand, 39074413 - 39074516
Alignment:
Q  346 taataagggaaattctaaatggtgcccc-gaggcagtggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaat 444  Q
    ||||| ||||||| ||||  |||||||| | |||| ||||||||| || | ||||||||| |||||||||||| | ||||||| |||||||||||| |||    
T  39074413 taatatgggaaatgctaaccggtgcccccggggcactggttaagggta-tgaaaaaggaaattatatagtagttaatgcattg-aaattgtgtaattaat 39074510  T
Q  445 tcataa 450  Q
    | ||||    
T  39074511 ttataa 39074516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 406 - 455
Target Start/End: Complemental strand, 44611284 - 44611235
Alignment:
Q  406 ttatatagtagtcattgcattgaaaattgtgtaatcaattcataaaaagt 455  Q
    ||||||| |||| |||  ||| ||||||||||||||||||||||||||||    
T  44611284 ttatataatagttattaaattaaaaattgtgtaatcaattcataaaaagt 44611235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 350 - 450
Target Start/End: Original strand, 52520679 - 52520778
Alignment:
Q  350 aagggaaattctaaatggtgcccc-gaggcagtggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcat 448  Q
    ||||||||| ||||  |||||||| | |||| ||||||||| || | ||||||||| |||||||||||| | ||||||| |||||||||||| |||| ||    
T  52520679 aagggaaatgctaaccggtgcccccggggcactggttaagggta-tgaaaaaggaaattatatagtagttaatgcattg-aaattgtgtaattaatttat 52520776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 381 - 453
Target Start/End: Original strand, 27695811 - 27695883
Alignment:
Q  381 tggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataaaaa 453  Q
    ||||||| |||||| ||||| |||||||||||||||| |||| ||| |||||||| |||||||||||||||||    
T  27695811 tggttaaagatactaaaaaatgaagttatatagtagttattgtattaaaaattgtataatcaattcataaaaa 27695883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 479 - 540
Target Start/End: Complemental strand, 11797028 - 11796966
Alignment:
Q  479 ataacttccttttttagtatccttaac-agtgccccgagacaccggttaacatgaccctttta 540  Q
    ||||||||||||||| ||||||||||| ||||||||  ||||||||||| |||||||||||||    
T  11797028 ataacttccttttttggtatccttaactagtgccccaggacaccggttagcatgaccctttta 11796966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 352 - 450
Target Start/End: Complemental strand, 17333467 - 17333371
Alignment:
Q  352 gggaaattctaaatggtgccccgaggcagtggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataa 450  Q
    ||||||| ||||  ||||||||  |||| |||||||||||| | ||||||||| |||||||||||| | ||||||| |||||||||||| |||||||||    
T  17333467 gggaaatgctaaccggtgcccccgggcactggttaaggata-tgaaaaaggaaattatatagtagttaatgcattg-aaattgtgtaattaattcataa 17333371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 349 - 451
Target Start/End: Complemental strand, 28726095 - 28725992
Alignment:
Q  349 taagggaaattctaaatggtgcccc-gaggcagtggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattca 447  Q
    |||||||||| ||||  |||||||| | |||| |||||||||||| | ||||||||| ||||||  || | ||||||||||||||||| |||| ||| ||    
T  28726095 taagggaaatgctaaccggtgcccccggggcactggttaaggataataaaaaaggaaattatatgttaattattgcattgaaaattgtttaattaatcca 28725996  T
Q  448 taaa 451  Q
    ||||    
T  28725995 taaa 28725992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 345 - 450
Target Start/End: Complemental strand, 9266921 - 9266817
Alignment:
Q  345 ttaataagggaaattctaaatggtg-ccccgaggcagtggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaa 443  Q
    ||||||||||||||  |||  |||| ||||| |||| |||||||||||| | ||||||||| |||||||||| | | |||||||||| ||||||||| ||    
T  9266921 ttaataagggaaatgttaaccggtgtccccgcggcactggttaaggata-tgaaaaaggaaattatatagtatttaatgcattgaaa-ttgtgtaattaa 9266824  T
Q  444 ttcataa 450  Q
    |||||||    
T  9266823 ttcataa 9266817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 406 - 452
Target Start/End: Original strand, 28557815 - 28557861
Alignment:
Q  406 ttatatagtagtcattgcattgaaaattgtgtaatcaattcataaaa 452  Q
    |||||||||||| |||| ||| |||||||||||||||||||||||||    
T  28557815 ttatatagtagttattgtattaaaaattgtgtaatcaattcataaaa 28557861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 370 - 450
Target Start/End: Complemental strand, 36446491 - 36446414
Alignment:
Q  370 ccccgaggcagtggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataa 450  Q
    |||||||||| |||||||| |||  |||||||||| |||||||||||| | ||||||| |||||||||||| |||| ||||    
T  36446491 ccccgaggcactggttaagaata--taaaaaggaaattatatagtagttaatgcattg-aaattgtgtaattaatttataa 36446414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 387 - 455
Target Start/End: Complemental strand, 6489368 - 6489300
Alignment:
Q  387 aggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataaaaagt 455  Q
    |||||| | |||||| || ||||||| || |||||| ||| ||||||||||||||||| ||||||||||    
T  6489368 aggatattaaaaaagaaaattatataataatcattgaatttaaaattgtgtaatcaatccataaaaagt 6489300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 470 - 535
Target Start/End: Complemental strand, 48611746 - 48611678
Alignment:
Q  470 ttttattttataact-tccttttttagtatccttaac-agtgccccg-agacaccggttaacatgaccc 535  Q
    |||||||||| |||| || ||||||||| |||||||| ||||||||| |||||||||||||||||||||    
T  48611746 ttttattttaaaactatctttttttagtttccttaaccagtgccccgtagacaccggttaacatgaccc 48611678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 396 - 451
Target Start/End: Complemental strand, 33644477 - 33644422
Alignment:
Q  396 aaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataaa 451  Q
    |||||| || ||||||| || | |||||||||||||||||||||| ||||||||||    
T  33644477 aaaaagaaaattatataataattattgcattgaaaattgtgtaattaattcataaa 33644422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 278 - 342
Target Start/End: Complemental strand, 45936065 - 45935999
Alignment:
Q  278 tttacaccatcaacaaatcacaattaatcatatgt--gactttagaagtagttatgattaaagttaa 342  Q
    ||||||| |||||||| ||||||| ||||||||||  || |||||||||||||||  ||||||||||    
T  45936065 tttacactatcaacaattcacaatcaatcatatgtacgagtttagaagtagttatcgttaaagttaa 45935999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 536 - 575
Target Start/End: Complemental strand, 49364424 - 49364385
Alignment:
Q  536 ttttaataatatgataattatgattgattgacaatgtaaa 575  Q
    |||||||||| ||||||||||||||||| |||||||||||    
T  49364424 ttttaataatctgataattatgattgatggacaatgtaaa 49364385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 381 - 455
Target Start/End: Complemental strand, 35700806 - 35700734
Alignment:
Q  381 tggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataaaaagt 455  Q
    |||||||||||||| ||||||||| ||||| |||||| | | |||||||| ||||||||| |||| |||||||||    
T  35700806 tggttaaggatact-aaaaaggaaattatacagtagttaatacattgaaa-ttgtgtaattaatttataaaaagt 35700734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 381 - 450
Target Start/End: Complemental strand, 3784869 - 3784802
Alignment:
Q  381 tggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataa 450  Q
    |||||||||||| | ||||||||| |||||||||||| | ||||||| |||||||||||| |||| ||||    
T  3784869 tggttaaggata-tgaaaaaggaaattatatagtagttaatgcattg-aaattgtgtaattaattgataa 3784802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 350 - 450
Target Start/End: Original strand, 18043160 - 18043259
Alignment:
Q  350 aagggaaattctaaatggtgcc-ccgaggcagtggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcat 448  Q
    ||||||||| ||||  |||||| ||| |||| ||||||||| || | ||||||||| |||||||||||| | ||||||| |||||||||||| |||| ||    
T  18043160 aagggaaatgctaaccggtgcctccggggcactggttaagggta-taaaaaaggaaattatatagtagttaatgcattg-aaattgtgtaattaatttat 18043257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 381 - 450
Target Start/End: Complemental strand, 30294537 - 30294470
Alignment:
Q  381 tggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataa 450  Q
    |||||||||||| | ||||||||| |||||||||||| | ||||||| |||||||||||| |||| ||||    
T  30294537 tggttaaggata-tgaaaaaggaaattatatagtagttaatgcattg-aaattgtgtaattaatttataa 30294470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 419 - 456
Target Start/End: Original strand, 34599071 - 34599108
Alignment:
Q  419 attgcattgaaaattgtgtaatcaattcataaaaagtt 456  Q
    ||||||||||||||||||||||||||  ||||||||||    
T  34599071 attgcattgaaaattgtgtaatcaatagataaaaagtt 34599108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 370 - 451
Target Start/End: Complemental strand, 38595920 - 38595839
Alignment:
Q  370 ccccgaggcagtggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataaa 451  Q
    ||||| |||| |||||||||||| | |||| |||| ||||||  || | ||||||||||||||||| |||| ||| ||||||    
T  38595920 ccccggggcactggttaaggataataaaaagggaaattatatgttaattattgcattgaaaattgtttaattaatccataaa 38595839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 382 - 453
Target Start/End: Complemental strand, 252476 - 252405
Alignment:
Q  382 ggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataaaaa 453  Q
    ||||||||||||| ||||  ||| ||||||| |||| |||| ||||||||||||||||||||||||||||||    
T  252476 ggttaaggatactaaaaatagaaattatatattagttattgtattgaaaattgtgtaatcaattcataaaaa 252405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 384 - 453
Target Start/End: Original strand, 11633951 - 11634019
Alignment:
Q  384 ttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataaaaa 453  Q
    ||||||||||| |||||| || |||||||||||| |||||||||||||||||||||| ||| ||||||||    
T  11633951 ttaaggatactaaaaaagtaa-ttatatagtagttattgcattgaaaattgtgtaattaatacataaaaa 11634019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 383 - 506
Target Start/End: Original strand, 30938952 - 30939075
Alignment:
Q  383 gttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataaaaagttnnnnnnntgtcatttttattttataa 482  Q
    |||||||||||| | |||| |||||||| | |||| |||| |||||||||| |||||||||| ||||||||||        | |  |||||| |||||||    
T  30938952 gttaaggatactaacaaagaaagttatacattagttattgtattgaaaattatgtaatcaatccataaaaagtccaaaaaatattctttttaatttataa 30939051  T
Q  483 cttccttttttagtatccttaaca 506  Q
    ||||||||||| |||||| |||||    
T  30939052 cttccttttttggtatccctaaca 30939075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 384 - 453
Target Start/End: Complemental strand, 11616285 - 11616217
Alignment:
Q  384 ttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataaaaa 453  Q
    ||||||||||| |||||| || |||||||||||| ||||||||||||||||| |||| ||| ||||||||    
T  11616285 ttaaggatactaaaaaagtaa-ttatatagtagttattgcattgaaaattgtataattaatacataaaaa 11616217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 349 - 450
Target Start/End: Original strand, 20897945 - 20898045
Alignment:
Q  349 taagggaaattctaaatggtgccccgagg-cagtggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattca 447  Q
    |||||||||| ||||  |||||||| ||| || |||||||||||| | ||||||||| |||||||||||| | ||||||| |||||||||||| |||| |    
T  20897945 taagggaaatgctaaccggtgcccccagggcactggttaaggata-tgaaaaaggaaattatatagtagttaatgcattg-aaattgtgtaattaattga 20898042  T
Q  448 taa 450  Q
    |||    
T  20898043 taa 20898045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 407 - 456
Target Start/End: Complemental strand, 7729543 - 7729494
Alignment:
Q  407 tatatagtagtcattgcattgaaaattgtgtaatcaattcataaaaagtt 456  Q
    |||||||| || |||||||||||||||||||||||||| |||| ||||||    
T  7729543 tatatagttgttattgcattgaaaattgtgtaatcaatccatacaaagtt 7729494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 370 - 451
Target Start/End: Original strand, 22021650 - 22021731
Alignment:
Q  370 ccccgaggcagtggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataaa 451  Q
    ||||| |||| | ||||||| |||| ||||| ||| |||||||||| | |||||||||||| ||||||||| ||| ||||||    
T  22021650 ccccggggcactagttaaggttactaaaaaaagaatttatatagtaattattgcattgaaacttgtgtaattaatccataaa 22021731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 419 - 455
Target Start/End: Complemental strand, 6802245 - 6802209
Alignment:
Q  419 attgcattgaaaattgtgtaatcaattcataaaaagt 455  Q
    ||||||||||||||||| |||||||||||||||||||    
T  6802245 attgcattgaaaattgtataatcaattcataaaaagt 6802209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 350 - 450
Target Start/End: Complemental strand, 18276802 - 18276704
Alignment:
Q  350 aagggaaattctaaatggtgccccgaggcagtggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcata 449  Q
    |||||||||  ||| |||||||||  |||| |||||||||||| | ||||||||| |||||||||||| | ||||||| || ||||||||| |||| |||    
T  18276802 aagggaaatgttaactggtgcccctgggcactggttaaggata-tgaaaaaggaaattatatagtagttaatgcattg-aatttgtgtaattaatttata 18276705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 347 - 430
Target Start/End: Original strand, 23402133 - 23402216
Alignment:
Q  347 aataagggaaattctaaatggtgcc-ccgaggcagtggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaa 430  Q
    |||||||||||| |||| ||||||| ||| |||| |||||||||||| | ||||||||| |||||||||| | | ||||||||||    
T  23402133 aataagggaaatgctaactggtgcctccggggcactggttaaggata-tgaaaaaggaaattatatagtaattaatgcattgaaa 23402216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 381 - 449
Target Start/End: Complemental strand, 26879303 - 26879236
Alignment:
Q  381 tggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcata 449  Q
    ||||||| |||||| ||||||||| || ||||||| | |||| ||||||||||||||||||||| ||||    
T  26879303 tggttaatgatact-aaaaaggaaattgtatagtaattattgtattgaaaattgtgtaatcaatccata 26879236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 348 - 450
Target Start/End: Complemental strand, 34396717 - 34396616
Alignment:
Q  348 ataagggaaattctaaatggtgccccgagg-cagtggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattc 446  Q
    ||||||||||| ||||  |||||||| ||| ||  ||||||||||| | ||||||||| |||||||||||| | ||||||| |||||||||||| ||||     
T  34396717 ataagggaaatgctaaccggtgcccccaggacacaggttaaggata-tgaaaaaggaaattatatagtagttaatgcattg-aaattgtgtaattaattt 34396620  T
Q  447 ataa 450  Q
    ||||    
T  34396619 ataa 34396616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 386 - 452
Target Start/End: Complemental strand, 11636665 - 11636600
Alignment:
Q  386 aaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataaaa 452  Q
    |||||| || ||| ||||| ||||||| || | |||| |||||||||||||||||||||||||||||    
T  11636665 aaggatcctaaaataggaaattatataataattattg-attgaaaattgtgtaatcaattcataaaa 11636600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 376 - 450
Target Start/End: Complemental strand, 34477711 - 34477639
Alignment:
Q  376 ggcagtggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataa 450  Q
    |||| |||||||||||| | ||||||||| |||||||||||| | ||||||| |||||||||||| |||| ||||    
T  34477711 ggcactggttaaggata-tgaaaaaggaaattatatagtagttaatgcattg-aaattgtgtaattaattgataa 34477639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 350 - 450
Target Start/End: Original strand, 3515764 - 3515863
Alignment:
Q  350 aagggaaattctaaatggtgccccgagg-cagtggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcat 448  Q
    ||||||||| ||||  |||||||| ||| || ||||||||| || | ||||||||| |||||||||||| | ||||||| |||||||||||| |||| ||    
T  3515764 aagggaaatgctaaccggtgcccccagggcactggttaagggta-tgaaaaaggaaattatatagtagttaatgcattg-aaattgtgtaattaatttat 3515861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 362 - 450
Target Start/End: Complemental strand, 11115271 - 11115184
Alignment:
Q  362 aaatggtg-ccccgaggcagtggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataa 450  Q
    |||||||| |||||||||| |||||||||||| | ||||||||| ||||||| |||| | | ||||| |||||||||||| |||| ||||    
T  11115271 aaatggtgtccccgaggcactggttaaggata-taaaaaaggaaattatataatagttaatacattg-aaattgtgtaattaatttataa 11115184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 351 - 440
Target Start/End: Complemental strand, 29451301 - 29451214
Alignment:
Q  351 agggaaattctaaatggtgccccgaggcagtggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaat 440  Q
    |||||||| |||| ||||||| |  ||||  ||||||||||| | ||||||||| |||||||||||| | ||||||| ||||||||||||    
T  29451301 agggaaatgctaactggtgcctccgggcaccggttaaggata-tgaaaaaggaaattatatagtagttaatgcattg-aaattgtgtaat 29451214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 383 - 453
Target Start/End: Original strand, 66430 - 66500
Alignment:
Q  383 gttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataaaaa 453  Q
    |||||||||||  ||||| ||||||||||| |||| |||||||||||||||||||||| ||| ||||||||    
T  66430 gttaaggatacgaaaaaatgaagttatataatagttattgcattgaaaattgtgtaattaatccataaaaa 66500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 381 - 455
Target Start/End: Complemental strand, 34435811 - 34435737
Alignment:
Q  381 tggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataaaaagt 455  Q
    ||||| |||||||| ||||||||| ||||||| |||| |||||||| ||||||||||||||||| ||| ||||||    
T  34435811 tggttcaggatactaaaaaaggaaattatataatagttattgcattaaaaattgtgtaatcaatccattaaaagt 34435737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 349 - 451
Target Start/End: Complemental strand, 34557079 - 34556977
Alignment:
Q  349 taagggaaattctaaatggtgccccgaggcagtggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcat 448  Q
    |||||||||| |||| |||||||||| |||| |||||||||||| | |||| |||| ||||||  || | ||||||||||||||||| |||| ||| |||    
T  34557079 taagggaaatgctaactggtgccccggggcattggttaaggataataaaaagggaaattatatgttaattattgcattgaaaattgtttaattaatccat 34556980  T
Q  449 aaa 451  Q
    |||    
T  34556979 aaa 34556977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 278 - 339
Target Start/End: Complemental strand, 35170056 - 35169995
Alignment:
Q  278 tttacaccatcaacaaatcacaattaatcatatgtgactttagaagtagttatgattaaagt 339  Q
    |||||||  ||||||||||| ||  |||||| ||||||||||||||||||||||||||||||    
T  35170056 tttacactgtcaacaaatcataaccaatcatgtgtgactttagaagtagttatgattaaagt 35169995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 406 - 453
Target Start/End: Original strand, 22744650 - 22744697
Alignment:
Q  406 ttatatagtagtcattgcattgaaaattgtgtaatcaattcataaaaa 453  Q
    |||||||||||| |||||||| ||||||||||||||||| ||||||||    
T  22744650 ttatatagtagttattgcattaaaaattgtgtaatcaatccataaaaa 22744697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 383 - 456
Target Start/End: Complemental strand, 38022647 - 38022574
Alignment:
Q  383 gttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataaaaagtt 456  Q
    |||||||||||| | |||| || |||||||||||| |||| |||||||||||| |||| |||  ||||||||||    
T  38022647 gttaaggatactaataaagaaaattatatagtagttattgtattgaaaattgtataattaatctataaaaagtt 38022574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 287 - 339
Target Start/End: Original strand, 18577487 - 18577541
Alignment:
Q  287 tcaacaaatcacaattaatcatat--gtgactttagaagtagttatgattaaagt 339  Q
    ||||||||||| ||||||||||||  |||||||| |||||||||||| |||||||    
T  18577487 tcaacaaatcataattaatcatatatgtgactttcgaagtagttatgtttaaagt 18577541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 347 - 450
Target Start/End: Complemental strand, 24798593 - 24798492
Alignment:
Q  347 aataagggaaattctaaatggtgccccgaggcagtggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattc 446  Q
    |||||||||||| ||||  ||||||||  |||| | ||| |||||| | ||||||||| |||||||||||| | ||||||| |||||||||||| ||||     
T  24798593 aataagggaaatgctaaccggtgcccccgggcacttgttgaggata-tgaaaaaggaaattatatagtagttaatgcattg-aaattgtgtaattaattt 24798496  T
Q  447 ataa 450  Q
    ||||    
T  24798495 ataa 24798492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 351 - 450
Target Start/End: Complemental strand, 27456299 - 27456202
Alignment:
Q  351 agggaaattctaaatggtgccccgaggcagtggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataa 450  Q
    |||||||| |||| |||||||||  |||| |||||||||||| |  |||| ||| |||||||||||| | ||||||| |||||||||||| |||| ||||    
T  27456299 agggaaatgctaactggtgcccccgggcactggttaaggata-tggaaaaagaaattatatagtagttaatgcattg-aaattgtgtaattaatttataa 27456202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 371 - 450
Target Start/End: Original strand, 30810675 - 30810752
Alignment:
Q  371 cccgaggcagtggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataa 450  Q
    |||| |||| |||||||||||| | ||||||||| |||||||||||| | ||||||| |||||||||||| |||| ||||    
T  30810675 cccggggcactggttaaggata-tgaaaaaggaaattatatagtagttaatgcattg-aaattgtgtaattaatttataa 30810752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 395 - 453
Target Start/End: Complemental strand, 41468775 - 41468717
Alignment:
Q  395 taaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataaaaa 453  Q
    |||||||||| |||||||||| | ||| |||||||||||||||||| ||| | ||||||    
T  41468775 taaaaaggaaattatatagtaattattacattgaaaattgtgtaattaatccttaaaaa 41468717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 381 - 450
Target Start/End: Complemental strand, 11686480 - 11686413
Alignment:
Q  381 tggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataa 450  Q
    |||||||||||| | ||||||||| |||||||||||| | ||||||| |||||||||||| |||| ||||    
T  11686480 tggttaaggata-taaaaaaggaaattatatagtagttaatgcattg-aaattgtgtaattaatttataa 11686413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 381 - 450
Target Start/End: Original strand, 28587939 - 28588006
Alignment:
Q  381 tggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataa 450  Q
    |||||||||||| | ||||||||| |||||||||||||| || |||| |||||||||||| |||| ||||    
T  28587939 tggttaaggata-tgaaaaaggaaattatatagtagtcaatgtattg-aaattgtgtaattaatttataa 28588006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 384 - 453
Target Start/End: Complemental strand, 29738102 - 29738033
Alignment:
Q  384 ttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataaaaa 453  Q
    |||| |||||| |||||  |||||||||||||||  || |||| |||||| |||||||||| ||||||||    
T  29738102 ttaaagatactaaaaaataaagttatatagtagttgtttcattaaaaattatgtaatcaatccataaaaa 29738033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 350 - 450
Target Start/End: Complemental strand, 29993675 - 29993576
Alignment:
Q  350 aagggaaattctaaatggtgcccc-gaggcagtggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcat 448  Q
    ||||||||| ||||  |||||||| | ||||  ||||||||||| | ||||||||| |||||||||||| | ||||||| |||||||||||| |||| ||    
T  29993675 aagggaaatgctaacgggtgcccccggggcaccggttaaggata-tgaaaaaggaaattatatagtagttaatgcattg-aaattgtgtaattaatttat 29993578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 287 - 337
Target Start/End: Original strand, 46936999 - 46937051
Alignment:
Q  287 tcaacaaatcacaattaatcata--tgtgactttagaagtagttatgattaaa 337  Q
    ||||||||||||||| |||||||  |||||||||||||| | |||||||||||    
T  46936999 tcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaa 46937051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 382 - 455
Target Start/End: Complemental strand, 3999541 - 3999468
Alignment:
Q  382 ggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataaaaagt 455  Q
    |||||| |||||| ||||||||| ||| ||||||||  ||||||||||||||||||||| ||| ||||||||||    
T  3999541 ggttaatgatactaaaaaaggaaattacatagtagttgttgcattgaaaattgtgtaataaatccataaaaagt 3999468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 396 - 456
Target Start/End: Complemental strand, 19350826 - 19350766
Alignment:
Q  396 aaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataaaaagtt 456  Q
    ||||||||| ||| |||||| | |||| |||||||||||||||||||||||||||||||||    
T  19350826 aaaaaggaaattaaatagtaattattgaattgaaaattgtgtaatcaattcataaaaagtt 19350766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 381 - 453
Target Start/End: Complemental strand, 26493867 - 26493795
Alignment:
Q  381 tggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataaaaa 453  Q
    ||||||| |||||| | ||| ||| |||||||||||| |||||||| |||||||| |||||||| ||||||||    
T  26493867 tggttaaagatactaacaaatgaaattatatagtagttattgcattaaaaattgtataatcaatccataaaaa 26493795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 384 - 455
Target Start/End: Original strand, 20654707 - 20654778
Alignment:
Q  384 ttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataaaaagt 455  Q
    |||| |||||| ||||||||| ||||| |||||  |||||||||||||||||||||| |||  |||||||||    
T  20654707 ttaatgatactaaaaaaggaaattatagagtagctattgcattgaaaattgtgtaattaatcaataaaaagt 20654778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 352 - 450
Target Start/End: Original strand, 32217045 - 32217142
Alignment:
Q  352 gggaaattctaaatggtgcccc-gaggcagtggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataa 450  Q
    ||||||| |||| ||||||||| | |||| |||||||||||| | ||||||||| |||||||||||| | ||||||| |||||||||||| |||| ||||    
T  32217045 gggaaatgctaactggtgcccccggggcactggttaaggata-taaaaaaggaaattatatagtagttaatgcattg-aaattgtgtaattaatttataa 32217142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 381 - 455
Target Start/End: Original strand, 30799992 - 30800066
Alignment:
Q  381 tggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataaaaagt 455  Q
    ||||||| |||||| | ||||||| ||||||| || | |||||||||| |||| ||||||| |||||||||||||    
T  30799992 tggttaaagatactaataaaggaaattatataatatttattgcattgataattatgtaatcgattcataaaaagt 30800066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 347 - 450
Target Start/End: Original strand, 43944502 - 43944604
Alignment:
Q  347 aataagggaaattctaaatggtgcc-ccgaggcagtggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaatt 445  Q
    |||||||||||| ||||  |||||| ||| |||| ||||||||| || | ||||||||| |||||||||||| | ||||||| |||||||||||| ||||    
T  43944502 aataagggaaatgctaaccggtgcctccggggcactggttaagggta-tgaaaaaggaaattatatagtagttaatgcattg-aaattgtgtaattaatt 43944599  T
Q  446 cataa 450  Q
     ||||    
T  43944600 tataa 43944604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 376 - 450
Target Start/End: Original strand, 28755645 - 28755717
Alignment:
Q  376 ggcagtggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataa 450  Q
    |||| |||||||||||| | ||||||||| |||||||||||| | ||||||| |||||||||||| |||| ||||    
T  28755645 ggcactggttaaggata-tgaaaaaggaaattatatagtagttaatgcattg-aaattgtgtaattaattgataa 28755717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 376 - 450
Target Start/End: Complemental strand, 42898907 - 42898835
Alignment:
Q  376 ggcagtggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataa 450  Q
    |||| |||||||||||| | ||||||||| |||||||||||| | ||||||| |||||||||||| |||| ||||    
T  42898907 ggcactggttaaggata-taaaaaaggaaattatatagtagttaatgcattg-aaattgtgtaattaatttataa 42898835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 286 - 324
Target Start/End: Complemental strand, 51060289 - 51060251
Alignment:
Q  286 atcaacaaatcacaattaatcatatgtgactttagaagt 324  Q
    |||||||||||||||| |||||| |||||||||||||||    
T  51060289 atcaacaaatcacaatcaatcatttgtgactttagaagt 51060251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 287 - 342
Target Start/End: Complemental strand, 33535254 - 33535202
Alignment:
Q  287 tcaacaaatcacaattaatcatatgtgactttagaagtagttatgattaaagttaa 342  Q
    ||||||||||||||   |||||||||   |||||||||||||||||||||||||||    
T  33535254 tcaacaaatcacaaccgatcatatgt---tttagaagtagttatgattaaagttaa 33535202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 372 - 440
Target Start/End: Complemental strand, 16807390 - 16807322
Alignment:
Q  372 ccgaggcagtggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaat 440  Q
    |||||||| |||||||||||  |||||||| || |||||||||||| ||||||||||||| ||||||||    
T  16807390 ccgaggcattggttaaggatgtttaaaaagaaaattatatagtagttattgcattgaaaactgtgtaat 16807322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 372 - 440
Target Start/End: Complemental strand, 16846671 - 16846603
Alignment:
Q  372 ccgaggcagtggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaat 440  Q
    |||||||| |||||||||||  |||||||| || |||||||||||| ||||||||||||| ||||||||    
T  16846671 ccgaggcattggttaaggatgtttaaaaagaaaattatatagtagttattgcattgaaaactgtgtaat 16846603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 382 - 455
Target Start/End: Complemental strand, 30217719 - 30217647
Alignment:
Q  382 ggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataaaaagt 455  Q
    ||||||||||||| |||||| || |||||||||| | ||||||||| ||||||||||||||||  |||||||||    
T  30217719 ggttaaggatactaaaaaagaaaattatatagtatttattgcattg-aaattgtgtaatcaatcgataaaaagt 30217647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 396 - 455
Target Start/End: Original strand, 40210252 - 40210311
Alignment:
Q  396 aaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataaaaagt 455  Q
    ||||||||| || ||||||||| |||||||||||||| ||||||| ||||||||| ||||    
T  40210252 aaaaaggaaattttatagtagttattgcattgaaaatggtgtaattaattcataagaagt 40210311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 347 - 440
Target Start/End: Original strand, 30486205 - 30486297
Alignment:
Q  347 aataagggaaattctaaatggtg-ccccgaggcagtggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaat 440  Q
    |||||||||||| |||| ||||| ||||| |||| |||||||||||| | ||||||||| |||||||||||| | || |||| ||||||||||||    
T  30486205 aataagggaaatgctaactggtgcccccggggcactggttaaggata-tgaaaaaggaaattatatagtagttaatgtattg-aaattgtgtaat 30486297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 352 - 450
Target Start/End: Original strand, 43637165 - 43637261
Alignment:
Q  352 gggaaattctaaatggtgccccgaggcagtggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataa 450  Q
    ||||||| ||||  ||||||||||| || |||||||||||| | || |||||| |||||||||||| | ||||||| |||||||||||| |||| ||||    
T  43637165 gggaaatgctaaccggtgccccgagacactggttaaggata-tgaataaggaaattatatagtagttaatgcattg-aaattgtgtaattaatttataa 43637261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 350 - 450
Target Start/End: Complemental strand, 561706 - 561607
Alignment:
Q  350 aagggaaattctaaatggtgcccc-gaggcagtggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcat 448  Q
    ||||||||| ||||  |||||||| | |||| |||||||||||| | ||||||||| |||||||||||| | ||||||| |||||||||||| |||| ||    
T  561706 aagggaaatgctaaccggtgcccccggggcactggttaaggata-tgaaaaaggaaattatatagtagttaatgcattg-aaattgtgtaattaatttat 561609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 384 - 444
Target Start/End: Complemental strand, 15406396 - 15406338
Alignment:
Q  384 ttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaat 444  Q
    ||||||||||| |||||  ||||||||||||| | ||||||||||||||| ||||||||||    
T  15406396 ttaaggatactaaaaaa--aagttatatagtaattattgcattgaaaattatgtaatcaat 15406338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 383 - 440
Target Start/End: Complemental strand, 30834517 - 30834460
Alignment:
Q  383 gttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaat 440  Q
    ||||||||| || ||||||||| ||||||| |||| ||||||||||||| ||||||||    
T  30834517 gttaaggatgctaaaaaaggaaattatataatagttattgcattgaaaactgtgtaat 30834460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 370 - 451
Target Start/End: Original strand, 44331758 - 44331839
Alignment:
Q  370 ccccgaggcagtggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataaa 451  Q
    ||||| |||| | ||||||| |||| ||||| ||| |||||||||| | |||||||||||| ||||||||| ||| ||||||    
T  44331758 ccccggggcactagttaaggttactaaaaaaagaatttatatagtaattattgcattgaaacttgtgtaattaatccataaa 44331839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 347 - 450
Target Start/End: Complemental strand, 26387255 - 26387153
Alignment:
Q  347 aataagggaaattctaaatggtgcc-ccgaggcagtggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaatt 445  Q
    |||||||||||| |||| ||||||| |||| | | | |||||||||| | ||||||||| |||||||||||| | ||||||| |||||||||||| ||||    
T  26387255 aataagggaaatgctaactggtgcctccgaagtacttgttaaggata-tgaaaaaggaaattatatagtagttaatgcattg-aaattgtgtaattaatt 26387158  T
Q  446 cataa 450  Q
     ||||    
T  26387157 tataa 26387153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 396 - 452
Target Start/End: Original strand, 35506740 - 35506796
Alignment:
Q  396 aaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataaaa 452  Q
    ||||| ||| |||||||||||| ||||||||||||||| | || |||||||||||||    
T  35506740 aaaaaagaaattatatagtagttattgcattgaaaattatatagtcaattcataaaa 35506796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 288 - 339
Target Start/End: Complemental strand, 36502035 - 36501984
Alignment:
Q  288 caacaaatcacaattaatcatatgtgactttagaagtagttatgattaaagt 339  Q
    |||||||||||||| |||||||||| | |||| ||||| |||||||||||||    
T  36502035 caacaaatcacaatcaatcatatgtaagtttacaagtaattatgattaaagt 36501984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 381 - 455
Target Start/End: Complemental strand, 3336505 - 3336429
Alignment:
Q  381 tggttaaggatacttaaaaaggaagttatat--agtagtcattgcattgaaaattgtgtaatcaattcataaaaagt 455  Q
    |||||||||| ||| |||||| || ||||||  | |||| ||||||||||||||||| |||| ||| ||||||||||    
T  3336505 tggttaaggacactaaaaaagaaaattatatgtaatagtaattgcattgaaaattgtataattaatccataaaaagt 3336429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 347 - 451
Target Start/End: Complemental strand, 44854531 - 44854427
Alignment:
Q  347 aataagggaaattctaaatggtgc-cccgaggcagtggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaatt 445  Q
    |||||||||||| ||||  ||| | |||| |||| |||||||||||| | ||||||||| ||||||  || | ||||||||||||||||| |||| |||     
T  44854531 aataagggaaatgctaaccggtactcccggggcactggttaaggataat-aaaaaggaaattatatgttaattattgcattgaaaattgtttaattaatc 44854433  T
Q  446 cataaa 451  Q
    ||||||    
T  44854432 cataaa 44854427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 278 - 338
Target Start/End: Original strand, 36261960 - 36262020
Alignment:
Q  278 tttacaccatcaacaaatcacaattaatcatatgtgactttagaagtagttatgattaaag 338  Q
    |||||||| ||| ||||||| ||  ||| ||||||||||||||||||||||||||||||||    
T  36261960 tttacaccgtcagcaaatcagaaacaattatatgtgactttagaagtagttatgattaaag 36262020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 64
Target Start/End: Original strand, 7570551 - 7570609
Alignment:
Q  6 cagacatacagcaaaacttgttccatagagtattggcttcttaattccttgcaggtaaa 64  Q
    |||||||||| ||| ||||| ||||| ||||||||| ||||||||| ||||||||||||    
T  7570551 cagacatacaccaagacttgctccattgagtattggattcttaatttcttgcaggtaaa 7570609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 712 - 797
Target Start/End: Original strand, 7570697 - 7570782
Alignment:
Q  712 aggtgcctattgcaatttctgttacactttttgaagccatatgcttatgcaaaggaactagagtaattgcatcaaggggaaaggaa 797  Q
    |||| |||||||| || |||||||| |||||||||||  ||||| ||| ||||||||| ||||| |||  ||||| ||||||||||    
T  7570697 aggttcctattgctatctctgttacgctttttgaagctgtatgcatatacaaaggaacaagagtgattaaatcaaagggaaaggaa 7570782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 376 - 452
Target Start/End: Complemental strand, 6042209 - 6042134
Alignment:
Q  376 ggcagtggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataaaa 452  Q
    |||| ||||||| |||||| |||||  || |||||||||| | |||||||||||||||||||||| ||| |||||||    
T  6042209 ggcactggttaaagatactaaaaaaaaaa-ttatatagtaattattgcattgaaaattgtgtaattaatccataaaa 6042134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 340 - 450
Target Start/End: Original strand, 8787327 - 8787436
Alignment:
Q  340 taattttaataagggaaattctaaatggtg-ccccgaggcagtggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgta 438  Q
    ||||||| ||||||||||| ||||  |||| ||||| |||| ||||||||| || | ||||| ||| |||||||||||| | ||||||| ||||||||||    
T  8787327 taatttttataagggaaatgctaaccggtgtccccggggcattggttaagggta-tgaaaaatgaaattatatagtagttaatgcattg-aaattgtgta 8787424  T
Q  439 atcaattcataa 450  Q
    || |||| ||||    
T  8787425 attaatttataa 8787436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 287 - 339
Target Start/End: Original strand, 16230755 - 16230809
Alignment:
Q  287 tcaacaaatcacaattaatcatatgt--gactttagaagtagttatgattaaagt 339  Q
    ||||||||||||||  ||||||||||  || ||||||||||||||||||||||||    
T  16230755 tcaacaaatcacaaccaatcatatgtttgattttagaagtagttatgattaaagt 16230809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 406 - 453
Target Start/End: Original strand, 29571574 - 29571621
Alignment:
Q  406 ttatatagtagtcattgcattgaaaattgtgtaatcaattcataaaaa 453  Q
    ||||||| || | ||||||||||||||||| |||||||||||||||||    
T  29571574 ttatatattatttattgcattgaaaattgtataatcaattcataaaaa 29571621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 370 - 440
Target Start/End: Original strand, 10069988 - 10070056
Alignment:
Q  370 ccccgaggcagtggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaat 440  Q
    ||||| |||| |||||||||||| | ||||||||| |||||||||||| | ||||||| ||||||||||||    
T  10069988 ccccggggcactggttaaggata-tgaaaaaggaaattatatagtagttaatgcattg-aaattgtgtaat 10070056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 346 - 451
Target Start/End: Complemental strand, 14214242 - 14214136
Alignment:
Q  346 taataagggaaattctaaatggtgc-cccgaggcagtggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaat 444  Q
    |||||||||||||  |||  ||||| |||||||||  ||||||||||| | |||| |||| ||||||  || | ||||||||||||||||| |||| |||    
T  14214242 taataagggaaatgttaaccggtgctcccgaggcacaggttaaggataataaaaagggaaattatatgttaattattgcattgaaaattgtttaattaat 14214143  T
Q  445 tcataaa 451  Q
     ||||||    
T  14214142 ccataaa 14214136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 383 - 454
Target Start/End: Complemental strand, 17534297 - 17534224
Alignment:
Q  383 gttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgta--atcaattcataaaaag 454  Q
    |||||||||||| |||| | || |||||||||||| ||| | ||||||||||||||  |||||| |||||||||    
T  17534297 gttaaggatactaaaaaggaaaattatatagtagttattactttgaaaattgtgtaatatcaatccataaaaag 17534224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 411 - 453
Target Start/End: Complemental strand, 18094082 - 18094040
Alignment:
Q  411 tagtagtcattgcattgaaaattgtgtaatcaattcataaaaa 453  Q
    ||||||| ||||||||||||||||| |||||||||||| ||||    
T  18094082 tagtagttattgcattgaaaattgtttaatcaattcattaaaa 18094040  T

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Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 352 - 450
Target Start/End: Complemental strand, 34651018 - 34650922
Alignment:
Q  352 gggaaattctaaatggtgccccgaggcagtggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataa 450  Q
    ||||||| ||||  ||||||||  |||| ||||||||| || | ||||||||| |||||||||||| | ||||||| |||||||||||| |||| ||||    
T  34651018 gggaaatgctaaccggtgcccccgggcactggttaagggta-tgaaaaaggaaattatatagtagttaatgcattg-aaattgtgtaattaatttataa 34650922  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 381 - 450
Target Start/End: Original strand, 13661838 - 13661905
Alignment:
Q  381 tggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataa 450  Q
    |||||||||||| | ||||||||| |||||||||||| | ||||||| |||||||||||| |||| ||||    
T  13661838 tggttaaggata-tgaaaaaggaaattatatagtagttaatgcattg-aaattgtgtaattaattgataa 13661905  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 406 - 455
Target Start/End: Original strand, 20719330 - 20719379
Alignment:
Q  406 ttatatagtagtcattgcattgaaaattgtgtaatcaattcataaaaagt 455  Q
    |||||||||| | ||| |||| ||||||||||||| ||||||||||||||    
T  20719330 ttatatagtaattattacattaaaaattgtgtaattaattcataaaaagt 20719379  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 385 - 453
Target Start/End: Complemental strand, 25731524 - 25731458
Alignment:
Q  385 taaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataaaaa 453  Q
    |||||||||| |||||  || |||||||||||| |||||||| ||||||||||||| || | |||||||    
T  25731524 taaggatactaaaaaa--aaattatatagtagttattgcattaaaaattgtgtaattaagttataaaaa 25731458  T

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Target: scaffold0674 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0674
Description:

Target: scaffold0674; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 376 - 450
Target Start/End: Complemental strand, 8058 - 7986
Alignment:
Q  376 ggcagtggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataa 450  Q
    |||| |||||||||||| | ||||||||| |||||||||||| | ||||||| |||||||||||| |||| ||||    
T  8058 ggcactggttaaggata-tgaaaaaggaaattatatagtagttaatgcattg-aaattgtgtaattaattgataa 7986  T

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Target: scaffold0549 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 376 - 450
Target Start/End: Original strand, 7313 - 7385
Alignment:
Q  376 ggcagtggttaaggatacttaaaaaggaagttatatagtagtcattgcattgaaaattgtgtaatcaattcataa 450  Q
    |||| |||||||||||| | ||||||||| |||||||||||| | ||||||| |||||||||||| |||| ||||    
T  7313 ggcactggttaaggata-tgaaaaaggaaattatatagtagttaatgcattg-aaattgtgtaattaattgataa 7385  T

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Target: scaffold1396 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold1396
Description:

Target: scaffold1396; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 288 - 333
Target Start/End: Complemental strand, 1375 - 1330
Alignment:
Q  288 caacaaatcacaattaatcatatgtgactttagaagtagttatgat 333  Q
    ||||||||||||| |||||||||| ||| |||||| ||||||||||    
T  1375 caacaaatcacaactaatcatatgcgacattagaaatagttatgat 1330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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