View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2123-Insertion-5 (Length: 515)
Name: NF2123-Insertion-5
Description: NF2123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2123-Insertion-5 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 95 - 515
Target Start/End: Complemental strand, 11825286 - 11824863
Alignment:
| Q |
95 |
ttagtaaggtttttaactgccaaagatcgagtggcttgagatttgatatatgaagatataatttgaaatatatagtttgagagctataaatttccaaaac |
194 |
Q |
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| T |
11825286 |
ttagtaaggttcttaactgccaaagattgagtggcttgagatttgatatatgaagagataatttgaaatatatagtttgagagctataaatttccaaaac |
11825187 |
T |
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| Q |
195 |
ccttaccaaaatcgtatttacataattcgtgcat--gtgaagatagatatcattcacatgaagatatatatcttcgtgtgaatgatattgtgactctctc |
292 |
Q |
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| T |
11825186 |
ccttaccgaaatcgtatttacatcattcgtatatatgtgaagatagatatcattcacatgaagatatatatcttcgtgtgaatgatattgtgattctctc |
11825087 |
T |
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| Q |
293 |
tttaaatagccaataccaactgcattattgtgaataatattgtgaagatagaccaaacaccaactgcattattaaaaaagtaagtattgtgcatccaaag |
392 |
Q |
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| T |
11825086 |
tttaaatagccaataccaacggcattattgtgaatgatattgtgaagatagaccaaacaccaattgcattattaaaaaagtaagtattgtgcatccaaag |
11824987 |
T |
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| Q |
393 |
taccaacaaacatacctaagtaatggcataa-aaaacaaggtatgaaaaatgatacatatgacaatacacatacactacaatgaacatttaaaaatacaa |
491 |
Q |
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| T |
11824986 |
taccaacaaacatatctaagtaatggcataaaaaaacaaggtatgaaaaatgatacatatgacaatacacatgcactacaatgaacatttaaaaatacaa |
11824887 |
T |
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| Q |
492 |
gaacccatcaacgatattaatatt |
515 |
Q |
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| T |
11824886 |
gaacccatcaacgatattaatatt |
11824863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 374 - 506
Target Start/End: Complemental strand, 10353642 - 10353517
Alignment:
| Q |
374 |
aagtattgtgcatccaaagtaccaacaaacatacctaagtaatggcataaaaaacaaggtatgaaaaatgatacatatgacaatacacatacactacaat |
473 |
Q |
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| T |
10353642 |
aagtattgtgcatccaaagtaccaacaaacatatctaagtagtgcta-------caagttatgaaaactgatgcatatgacaatacacatatactacatt |
10353550 |
T |
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| Q |
474 |
gaacatttaaaaatacaagaacccatcaacgat |
506 |
Q |
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| T |
10353549 |
gaacatttaaaaataaaagaacccatcaacgat |
10353517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 11825377 - 11825332
Alignment:
| Q |
7 |
atcaaccaaccaaatgaataatattagaatcctgtactaactaata |
52 |
Q |
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| T |
11825377 |
atcaaccaaccaaatgaataatattagaatcatgtactaactaata |
11825332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 239 - 280
Target Start/End: Original strand, 11825099 - 11825140
Alignment:
| Q |
239 |
atatcattcacatgaagatatatatcttcgtgtgaatgatat |
280 |
Q |
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| T |
11825099 |
atatcattcacacgaagatatatatcttcatgtgaatgatat |
11825140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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