View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21230_high_5 (Length: 255)
Name: NF21230_high_5
Description: NF21230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21230_high_5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 30 - 255
Target Start/End: Complemental strand, 2292040 - 2291815
Alignment:
| Q |
30 |
tccaagaaaataacccttcttccttccattgccaaactttccttacaaacaatctttcttgaatctcgtaatatgttttgttgactattacaaactcctc |
129 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2292040 |
tccaacaaaataacccttcttccttccattgccaaactttccttacaaacaatctttcttgaatctcgtaatatgttttgttgactattacaaactcctc |
2291941 |
T |
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| Q |
130 |
gtcaccttgactgattcataacagatggaagatcaactgatttcataacattcacatacccatcaactcattatttggagtgcaaaatataaagagaaat |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2291940 |
gtcaccttgactgattcataacagatggaagatcaactgatttcataacattcacatacccatcaactcattatttggagtgcaaaatataaagagaaat |
2291841 |
T |
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| Q |
230 |
ggttataaaatttatcattaatagaa |
255 |
Q |
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|||||||||||||||||||||||||| |
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| T |
2291840 |
ggttataaaatttatcattaatagaa |
2291815 |
T |
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