View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21230_high_7 (Length: 241)
Name: NF21230_high_7
Description: NF21230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21230_high_7 |
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| [»] scaffold0428 (2 HSPs) |
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| [»] chr6 (8 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: scaffold0428 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 12370 - 12146
Alignment:
| Q |
18 |
aactgcatcgatatgtgattgttgtttagcttcggcaacaatttgatcaactccattttctgttacactttcatcagccacttcagatgtagaggtttga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12370 |
aactgcatcgatatgtgattgttgtttagcttcggcaacaatttgatcaactccattttctgttacactttcatcagccacttcagatgtagaggtttga |
12271 |
T |
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| Q |
118 |
gattttttc-tgtggatgacatgaatgcagatttccgtgataaagtgttccttaaaatgttgtctatgaaacacagacaccggacacagcacggaaatta |
216 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
12270 |
gattttttcttgtggatgacatgaatgcagatttccgtgataaagtgttccttaaaatgttgtctatgaaacacagacaccagacgcagcacggaaatta |
12171 |
T |
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| Q |
217 |
caacctaacacaaatttaaaacccc |
241 |
Q |
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||||||||||||||||||||||||| |
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| T |
12170 |
caacctaacacaaatttaaaacccc |
12146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 109 - 226
Target Start/End: Original strand, 5399 - 5520
Alignment:
| Q |
109 |
gaggtttgagattt-tttctgtggatgacatgaatgcagatttccgtgataaagtgttccttaaaa---tgttgtctatgaaacacagacaccggacaca |
204 |
Q |
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|||||| ||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||| || |
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| T |
5399 |
gaggttcgagatttatttctgtggatgacatgaatgcagatttcagtgatatagtgttccttaaaatgttgttgtctatgaaacacagacaccggaaacg |
5498 |
T |
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| Q |
205 |
gcacggaaattacaacctaaca |
226 |
Q |
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| T |
5499 |
gaaaagaaattacaacctaaca |
5520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 33281882 - 33282106
Alignment:
| Q |
18 |
aactgcatcgatatgtgattgttgtttagcttcggcaacaatttgatcaactccattttctgttacactttcatcagccacttcagatgtagaggtttga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33281882 |
aactgcatcgatatgtgattgttgtttagcttcggcaacaatttgatcaactccattttctgttacactttcatcagccacttcagatgtagaggtttga |
33281981 |
T |
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| Q |
118 |
gattttttc-tgtggatgacatgaatgcagatttccgtgataaagtgttccttaaaatgttgtctatgaaacacagacaccggacacagcacggaaatta |
216 |
Q |
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| T |
33281982 |
gattttttcttgtggatgacatgaatgcagatttccgtgataaagtgttccttaaaatgttgtctatgaaacacagacaccagacgcagcacggaaatta |
33282081 |
T |
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| Q |
217 |
caacctaacacaaatttaaaacccc |
241 |
Q |
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||||||||||||||||||||||||| |
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| T |
33282082 |
caacctaacacaaatttaaaacccc |
33282106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 24 - 184
Target Start/End: Original strand, 33397680 - 33397841
Alignment:
| Q |
24 |
atcgatatgtgattgttgtttagcttcggcaacaatttgatcaactccattttctgttacactttcatcagccacttcagatgtagaggtttgagattt- |
122 |
Q |
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|||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33397680 |
atcgatatgtgattgttgttcatattcggcaacaatttgatcaactacattttctgttacactttcatcagccacttcaactgtagaggtttgagattta |
33397779 |
T |
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| Q |
123 |
tttctgtggatgacatgaatgcagatttccgtgataaagtgttccttaaaatgttgtctatg |
184 |
Q |
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| T |
33397780 |
tttctgtggatgacatgaatgcagatttcagtgataaagtgttccttaaaatgttgtctatg |
33397841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 24 - 184
Target Start/End: Original strand, 33408591 - 33408752
Alignment:
| Q |
24 |
atcgatatgtgattgttgtttagcttcggcaacaatttgatcaactccattttctgttacactttcatcagccacttcagatgtagaggtttgagattt- |
122 |
Q |
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|||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33408591 |
atcgatatgtgattgttgttcatattcggcaacaatttgatcaactacattttctgttacactttcatcagccacttcaactgtagaggtttgagattta |
33408690 |
T |
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| Q |
123 |
tttctgtggatgacatgaatgcagatttccgtgataaagtgttccttaaaatgttgtctatg |
184 |
Q |
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| T |
33408691 |
tttctgtggatgacatgaatgcagatttcagtgataaagtgttccttaaaatgttgtctatg |
33408752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 109 - 226
Target Start/End: Original strand, 33283636 - 33283757
Alignment:
| Q |
109 |
gaggtttgagattt-tttctgtggatgacatgaatgcagatttccgtgataaagtgttccttaaaa---tgttgtctatgaaacacagacaccggacaca |
204 |
Q |
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|||||| ||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||| || |
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| T |
33283636 |
gaggttcgagatttatttctgtggatgacatgaatgcagatttcagtgatatagtgttccttaaaatgttgttgtctatgaaacacagacaccggaaacg |
33283735 |
T |
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| Q |
205 |
gcacggaaattacaacctaaca |
226 |
Q |
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| | ||||||||||||||||| |
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| T |
33283736 |
gaaatgaaattacaacctaaca |
33283757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 109 - 241
Target Start/End: Original strand, 33387108 - 33387250
Alignment:
| Q |
109 |
gaggtttgagattt-tttctgtggatgacatgaatgcagatttccgtgataaagtgttccttaaa---atgttgtctatgaaacacagacac------cg |
198 |
Q |
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|||||| ||||||| |||||||||||||||||||||||||| || |||||||||||||||| ||| ||||||||||||||||||||||| || |
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| T |
33387108 |
gaggttcgagatttatttctgtggatgacatgaatgcagatctcagtgataaagtgttcctaaaattgttgttgtctatgaaacacagacacagaaatcg |
33387207 |
T |
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| Q |
199 |
gacacagcacggaaattacaacctaacacaaatttaaaacccc |
241 |
Q |
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| T |
33387208 |
aaaacgacacggagattacaacctaacacaaatttaaaacccc |
33387250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 196
Target Start/End: Original strand, 33261576 - 33261665
Alignment:
| Q |
109 |
gaggtttgagattt-tttctgtggatgacatgaatgcagatttccgtgataaagtgttccttaaaa---tgttgtctatgaaacacagacac |
196 |
Q |
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|||||| ||||||| ||||||||||||||||||||||||||||| ||||| | ||| ||||||| ||||||||||||||||||||||| |
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| T |
33261576 |
gaggttcgagatttatttctgtggatgacatgaatgcagatttcaatgatata--gttacttaaaatgttgttgtctatgaaacacagacac |
33261665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 175
Target Start/End: Original strand, 33357956 - 33358021
Alignment:
| Q |
109 |
gaggtttgagat-tttttctgtggatgacatgaatgcagatttccgtgataaagtgttccttaaaatg |
175 |
Q |
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|||||||||||| ||||||||||||||| ||||| ||| ||||| ||||| |||||||||||||||| |
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| T |
33357956 |
gaggtttgagatatttttctgtggatgatatgaaagcatatttcagtgat--agtgttccttaaaatg |
33358021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Original strand, 33405220 - 33405266
Alignment:
| Q |
140 |
aatgcagatttccgtgataaagtgttccttaaaatgttgtctatgaa |
186 |
Q |
| |
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||||| |||||| |||||||||||||||||||||||| |||||||| |
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| T |
33405220 |
aatgctgatttcaatgataaagtgttccttaaaatgttatctatgaa |
33405266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 120 - 241
Target Start/End: Complemental strand, 17441888 - 17441759
Alignment:
| Q |
120 |
ttttttctgtggatgacatgaatgcagatttccgtgataaagtgttccttaaaa---tgttgtctatgaaac----acagacaccggacacagcacg-ga |
211 |
Q |
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|||||||||||||||||||| ||||| ||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||| || | | | | |
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| T |
17441888 |
ttttttctgtggatgacatggatgcaaatttcagtgataaagtgttccttaaaatattgttgtctatgaaacataaacagacaccggaaacgggatgcaa |
17441789 |
T |
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| Q |
212 |
aattacaacctaacacaaatttaaaacccc |
241 |
Q |
| |
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|||||||||| ||||||||||||||||||| |
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| T |
17441788 |
aattacaaccaaacacaaatttaaaacccc |
17441759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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