View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21230_low_2 (Length: 558)
Name: NF21230_low_2
Description: NF21230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21230_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 145; Significance: 5e-76; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 356 - 539
Target Start/End: Original strand, 8315998 - 8316188
Alignment:
| Q |
356 |
accatcatagcatgtgttgattattatattagactatgattcagcgaca-------ccagacacgatatggacattactgataatatgatataacgcctg |
448 |
Q |
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| T |
8315998 |
accatcacagcatgtgttgattattatattagactatgattcaccgacaccagacaccagacacgacatggacattactgataatatgatataaagcctg |
8316097 |
T |
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| Q |
449 |
aacattcctaatacaggagtttatcttgtagaacataatatgcaaatgatctcaagatatgtaatttaagtttcaaagataccaaggagga |
539 |
Q |
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| T |
8316098 |
aacattcctaatacatgagtttatcttgtagaacataatatgcaaatgatctcaagatatgtaatttaagtttcaaagataccaaggagga |
8316188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 99 - 271
Target Start/End: Original strand, 8315742 - 8315913
Alignment:
| Q |
99 |
tggggttaacacgttttttagataaaaatggcccaaattggnnnnnnnnnnnnnacaaaatgaatttggtaaaaacaaaagagtctcaagtttgaaccct |
198 |
Q |
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| T |
8315742 |
tggggttaacccgttttttagataaaaatggcccaaattggttttttagtttttacaaaatgaatttggcaaaaacaaaagagtctcaagtttgaaccct |
8315841 |
T |
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| Q |
199 |
gcggcgtcacagtctcaaattctgaacgagatatgaccgatcaggtattattgacttgtcaatcattctatag |
271 |
Q |
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| T |
8315842 |
gcggcgtcacagtctcaaattctgaacgaga-atgaccgatcaggtattattgacttgtcaatcattctatag |
8315913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 8315643 - 8315687
Alignment:
| Q |
13 |
aatattattttcaatctggattagtaaatttggaggggtataatt |
57 |
Q |
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| T |
8315643 |
aatattattttcaatctggattagtaaatttggaggggtataatt |
8315687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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