View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21230_low_3 (Length: 513)
Name: NF21230_low_3
Description: NF21230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21230_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 439; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 7 - 473
Target Start/End: Complemental strand, 31138180 - 31137714
Alignment:
| Q |
7 |
acatcatcatctcccttcgagtatgagtttgtttattcattagtatatgcaatcgtgaagcatatgttttcatcgacatgcacttacaccgtcgttggta |
106 |
Q |
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| T |
31138180 |
acatcatcatctcccttcgagtatgagtttgtttattcattagtatatgcaatcgtgaagcatatgttttcatcgacatgcacttacaccgtcgttggta |
31138081 |
T |
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| Q |
107 |
ctcatctaaagtcgttagctcttattgcaatgttgtttcataaggaaagtaaggagatcatcatgttgtattttttaagcaaccaataaatggaattgaa |
206 |
Q |
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| T |
31138080 |
ctcatctcaagtcgttagctcttattgcaatgttgtgtcataaggaaagtacggagatcatcatgttgtattttttaagcaaccaacaaatggaattgaa |
31137981 |
T |
|
| Q |
207 |
caccacattttcatccaaaatattaagatattaggcatatagatcttttgaccattcactttgacttcaatgtggaactcttactcttatatgaaatacc |
306 |
Q |
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|||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31137980 |
caccacatcttcatcaaaaatattaagatattaggcatatagatcttttgaccattcactttgacttcaatgtggaactcttactcttatatgaaatacc |
31137881 |
T |
|
| Q |
307 |
aacattataccattctagagtcttgaggaggctaaggaatcatgacattgacctaaaaacaacctcataagtggattgaatatcacagtttcacttaaat |
406 |
Q |
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| T |
31137880 |
aacattataccattctagagtcttgaggaggctaaggaatcatgacattgacctaaaaacaacctcataagtggattgaatatcacagtttcacttaaat |
31137781 |
T |
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| Q |
407 |
gataaaatcattaagtatatgaattatctgacttatatattgttcaacatataccttccattaatgc |
473 |
Q |
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| T |
31137780 |
gataaaatcattaagtatatgaatcatctgacttatatattgttcaacatataccttccattaatgc |
31137714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 240
Target Start/End: Complemental strand, 31139316 - 31139239
Alignment:
| Q |
163 |
atcatcatgttgtattttttaagcaaccaataaatggaattgaacaccacattttcatccaaaatattaagatattag |
240 |
Q |
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|||||||||||| ||||| ||||||||| | | |||||||||| ||||| |||| | |||||||||||||||||| |
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| T |
31139316 |
atcatcatgttgctctttttgagcaaccaaccagtagaattgaacatcacatcttcaccaaaaatattaagatattag |
31139239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 48473929 - 48473974
Alignment:
| Q |
202 |
ttgaacaccacattttcatccaaaatattaagatattaggcatata |
247 |
Q |
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| T |
48473929 |
ttgaacaccagattttcacccaaaatattaaaacattaggcatata |
48473974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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