View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21230_low_4 (Length: 392)
Name: NF21230_low_4
Description: NF21230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21230_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 14 - 376
Target Start/End: Original strand, 3308665 - 3309026
Alignment:
| Q |
14 |
aagggttgaacgcttcagtgtcaaggcaacgaaacgatgccgtattagtggagaatgttattgcttggaaaaggagagagaatatgaactttctaggtgt |
113 |
Q |
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| T |
3308665 |
aagggttgaaagcttcagtgtcaaggcaatgaaacgatgccgtattagtggagaatgttattgcttggaaaaggagagagaatatgaactttctaggtgt |
3308764 |
T |
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| Q |
114 |
atccaagtagaaaagcaaagttgtaaagcatggattccaactacgtagacgttaaggtaacaaaacgatgccgttttggagtatatnnnnnnnnnnnnnn |
213 |
Q |
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| T |
3308765 |
atcaaagtagaaaagcaaagttgtaaagcatggattccaactacgtagacgttaaggtaacaaaacgatgccgttttggagtatataaaaaaaattaaaa |
3308864 |
T |
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| Q |
214 |
nnttagtttgagtatccaaactcaaactagcatatgttttttatgtatacactccgacgagcaaatcataaatcacaaattaaacaactttagtatctgg |
313 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||||||| || || |||||||||||||||| |||||||||||||||||||||| |
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| T |
3308865 |
aattag--tgagtatccaaactcaaagtagcatatgttttttatgtatacactgtgaagatcaaatcataaatcacagattaaacaactttagtatctgg |
3308962 |
T |
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| Q |
314 |
tatctatcatttatctctgac-attaacaatcatcttaattgatatattttctgtatatgtatt |
376 |
Q |
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||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||| |
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| T |
3308963 |
tatctatcatttatctctgacgattaacaatcatctcaattgatatattttctatatatgtatt |
3309026 |
T |
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