View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21230_low_6 (Length: 248)
Name: NF21230_low_6
Description: NF21230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21230_low_6 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 47551251 - 47551001
Alignment:
| Q |
1 |
aatatatgtttcaaacatgcatctgaaagaatgagttaccactaacgcctatttgatctgctaccctaattcctaactcatgaattttcccagttaaaca |
100 |
Q |
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| T |
47551251 |
aatatatgttccaaacatgcatctgaaagaatgagttaccactaacgcctatttgatctgctaccctaattcctaactcatgaagtttcccagttaaaca |
47551152 |
T |
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| Q |
101 |
aattaacaaggggccttaactttcaaata----agaaaagtattgtttcagaacaatgtgttcatgaaaacatcatgtaatcaaattgttctatcacttt |
196 |
Q |
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| T |
47551151 |
aattaacaaggg-ccttaactttcaaataggaaagaaaagtattgtttcagaacaatgtgttcatgaaaacatcatgtaatcaaattgttctatcacttg |
47551053 |
T |
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| Q |
197 |
tcttcttcagcattgcatcacgacaaaaagaatccagttgatgatcaaagct |
248 |
Q |
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| T |
47551052 |
tcttcttcagcattgcatcaccacaaaaagaatccagttgatgatcaaagct |
47551001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 47538484 - 47538259
Alignment:
| Q |
1 |
aatatatgtttcaaacatgcatctgaaagaatgagttaccactaacgcctatttgatct--gctaccctaattcctaactcatgaattttcccagttaaa |
98 |
Q |
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|||||||||| || |||||| |||| ||||||||||||||||||| ||||||||||||| ||||||||||||| || ||||| |||||||||||||||| |
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| T |
47538484 |
aatatatgttccagacatgcttctggaagaatgagttaccactaaggcctatttgatctatgctaccctaattcttatctcataaattttcccagttaaa |
47538385 |
T |
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| Q |
99 |
caaattaacaag---gggccttaactttcaaata----agaaaagtattgtttcagaacaatgtgttcatgaaaacatcatgtaatcaaattgttctatc |
191 |
Q |
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| T |
47538384 |
cgaattaacaagaaagggccttaactttcaaataggaaagaaaagtattgtttcagaacaatgtgttcatgaaaacatcatgtaatcaaattgttctatc |
47538285 |
T |
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| Q |
192 |
acttttcttcttcagcattgcatcac |
217 |
Q |
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| T |
47538284 |
acttgtcttctttagcattgcatcac |
47538259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 47545041 - 47544830
Alignment:
| Q |
1 |
aatatatgtttcaaacatgcatctgaaagaatgagttaccactaacgcctatttgatct--gctaccctaattcctaactcatgaattttcccagttaaa |
98 |
Q |
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|||||||||| || |||||| |||| ||||||||||||||||||| ||||||||||||| ||||||||||||| || ||||| |||||||||||||||| |
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| T |
47545041 |
aatatatgttccagacatgcttctggaagaatgagttaccactaaggcctatttgatctatgctaccctaattcttatctcataaattttcccagttaaa |
47544942 |
T |
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| Q |
99 |
caaattaacaag---gggccttaactttcaaata----agaaaagtattgtttcagaacaatgtgttcatgaaaacatcatgtaatcaaattgttctatc |
191 |
Q |
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| T |
47544941 |
cgaattaacaagaaagggccttaactttcaaataggaaagaaaagtattgtttcagaacaatgtgttcatgaaaacatcatgtaatcaaattgttctatc |
47544842 |
T |
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| Q |
192 |
acttttcttctt |
203 |
Q |
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|||| ||||||| |
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| T |
47544841 |
acttgtcttctt |
47544830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 112 - 204
Target Start/End: Complemental strand, 47529275 - 47529179
Alignment:
| Q |
112 |
ggccttaactttcaaata----agaaaagtattgtttcagaacaatgtgttcatgaaaacatcatgtaatcaaattgttctatcacttttcttcttc |
204 |
Q |
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|||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||| |
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| T |
47529275 |
ggccttaactttcaaataggaaagaaaagtattgtctcaaaacaatgtgttcatgaaaacattatgtaatcaaattattctatcacttgtcttcttc |
47529179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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