View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21230_low_8 (Length: 236)
Name: NF21230_low_8
Description: NF21230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21230_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 47550863 - 47550675
Alignment:
| Q |
1 |
tattaaaagttggttgaaaaaagaaattatttcgattttcttgcacaggcacatatgcatcagctgataactcagaagggcttccatcaagtaatggcat |
100 |
Q |
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| T |
47550863 |
tattaaaagttggttgaaaaaagaaattatttcgattttcctgcacaggcacatatgcatcagctgataactca--agggcttccatcaagtaatggcat |
47550766 |
T |
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| Q |
101 |
tcccgttgacgatgcctcagacattggcattgcattaaacgccggaattgatccagttaatcttttacatctctctttagccgcattcacc |
191 |
Q |
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| T |
47550765 |
tcccattgacgatgcctcagacattggcattgcattaaacgccggaattgatccagttaatcttttacatctctctttagccgcattcacc |
47550675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 221
Target Start/End: Complemental strand, 47528994 - 47528792
Alignment:
| Q |
12 |
ggttgaaaaaagaaattatttcgattttcttgcacaggcacatatgcatcagctgataactcagaagggcttccatcaagtaatggcattcccgttgacg |
111 |
Q |
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|||||||||||| ||||||| ||| |||||||||||||||| |||||||||||||| | |||||||| |||||||||| ||||| ||||||| |||| | |
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| T |
47528994 |
ggttgaaaaaagtgattatttggatcttcttgcacaggcacagatgcatcagctgatgattcagaaggacttccatcaaataatgacattcccattgatg |
47528895 |
T |
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| Q |
112 |
atgcctcagacattggcattgcattaaacgccggaattgatccagttaatcttttacatctctctttagccgcattcaccttaaaaatgagaacaacata |
211 |
Q |
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|| |||||||| |||||||||||| |||| | |||||||| ||||||||| | |||||| |||| |||||||| ||||||||||||| ||| |
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| T |
47528894 |
atacctcagac------attgcattaaacaccgggttcgatccagtaaatcttttaactgtctcttcagccatcttcacctt-aaaatgagaacaatata |
47528802 |
T |
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| Q |
212 |
aagggaataa |
221 |
Q |
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| T |
47528801 |
aagggaataa |
47528792 |
T |
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