View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21230_low_9 (Length: 216)
Name: NF21230_low_9
Description: NF21230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21230_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 4243961 - 4243758
Alignment:
| Q |
1 |
gctcgagagatggtgattgcggttgtcgtgtccgtggaatcccataatttgatgttgcgacttttccaaaggctccataagagcatgccggctgcttgtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4243961 |
gctcgagagatggtgattgcggttgtcgtgtccgtggaatcccataatttgatgttgcgacttttccaaaggctccataagagcatgccggctgcttgtt |
4243862 |
T |
|
| Q |
101 |
gttgttgagagcataatctgtgcataaagtcaaacaacaatgtagtaaagttgttagcaagaggcagcagctcacttaacacaacatgtaagccaatatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4243861 |
gttgttgagagcataatctgtgcataaagtcaaacaacaatgtagtaaagttgttagcaagaggcagcagctcacttaacacaacatgtaagccaatatt |
4243762 |
T |
|
| Q |
201 |
cttc |
204 |
Q |
| |
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|||| |
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| T |
4243761 |
cttc |
4243758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 33495615 - 33495818
Alignment:
| Q |
1 |
gctcgagagatggtgattgcggttgtcgtgtccgtggaatcccataatttgatgttgcgacttttccaaaggctccataagagcatgccggctgcttgtt |
100 |
Q |
| |
|
||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
33495615 |
gctcgagagatggtgattgtggtttctgtctccgtggaatcccataatttgatgttgcgacttttccaaaggctccacaagagcatgccggctgtttgtt |
33495714 |
T |
|
| Q |
101 |
gttgttgagagcataatctgtgcataaagtcaaacaacaatgtagtaaagttgttagcaagaggcagcagctcacttaacacaacatgtaagccaatatt |
200 |
Q |
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||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||| |||||||||||| |
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| T |
33495715 |
gttgttgagaggataatctgtgcgtaaagtcaaacaacaatgtagtaaagttgttagcaagagggagaagctcacttaacacatcatataagccaatatt |
33495814 |
T |
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| Q |
201 |
cttc |
204 |
Q |
| |
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|||| |
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|
| T |
33495815 |
cttc |
33495818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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