View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21231_high_1 (Length: 741)
Name: NF21231_high_1
Description: NF21231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21231_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 685; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 685; E-Value: 0
Query Start/End: Original strand, 18 - 726
Target Start/End: Complemental strand, 37059054 - 37058346
Alignment:
| Q |
18 |
ttaagagtgagatcaagctcaattaaattatgtaacctacctaagtcactaggaatccagccactaagagagtttgtgccaaaactaatattttttagag |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37059054 |
ttaagagtgagatcaagctcaattaaattatgtaacctacctaagtcactaggaatccagccactaagagagtttgtgccaaaactaatattttttagag |
37058955 |
T |
|
| Q |
118 |
tagaaatatttcctagagattgtggaattgtaccatagaaactattctttccaagttttaagacctgcagcattttcaagctgctgatgtgttcaggaat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37058954 |
tagaaatatttcctagagattgtggaattgtaccatagaagctattctttccaagttttaagacctgcagcattttcaagctgctgatgtgttcaggaat |
37058855 |
T |
|
| Q |
218 |
tctgcttacaatcttgtttgatgacaaatcaagaatttgaagctcatctaaattggtaagatttgaaggaaacatcattccttcaaatctgttggaactc |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
37058854 |
tctgcttacaatcttgtttgatgacaaatcaagaatttgaagctcatctaaattggtaagatttgaaggaaacatgattccttcaaatctgttggaactc |
37058755 |
T |
|
| Q |
318 |
atatttagaactctcaaattatatagattggtaatttgctcaggaatgaatcctgtgaactggttatcctgcaattgaagggactgaagagaggacatgt |
417 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37058754 |
atatttagaactctcaaattatagagattggtaatttgctcaggaatgaatcctgtgaactggttatcctgcaattgaagggactgaagagaggacatgt |
37058655 |
T |
|
| Q |
418 |
tacctatataagggcttaagttacctgagagtccgaagcctgaaaggtccaagctagtcactctttggttatgcttgtcacataggacaccagtccaatt |
517 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37058654 |
tacctatataagggcttaagttacctgagagtccgaagcctgaaaggtccaagctagtcactctttggttatgcttgtcacataggacaccagtccaatt |
37058555 |
T |
|
| Q |
518 |
gcaaggagatgaattatggatccaagaggataatgggggaggagaagtgttattattgcttaactgagattttaatgagattaaggcttctttgtctgtg |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
37058554 |
gcaaggagatgaattatggatccaagaggataatgggggaggagaagtgttattattgcttaactgagattttaataagattaaggcttctttgtctgtg |
37058455 |
T |
|
| Q |
618 |
gtaatgcttagaggggttgatgatacaccaactaaaaggttgttgaaatggataaagatcattaataaggcaaaatgaagaagtaaatgagataacaaag |
717 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37058454 |
gtaatgcttagagtggttgatgatacaccaactaaaaggttgttgaaatggataaagatcattaataaggcaaaatgaagaagtaaatgagagaacaaag |
37058355 |
T |
|
| Q |
718 |
ccatgtttg |
726 |
Q |
| |
|
||||||||| |
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|
| T |
37058354 |
ccatgtttg |
37058346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 662; E-Value: 0
Query Start/End: Original strand, 18 - 726
Target Start/End: Complemental strand, 37066530 - 37065824
Alignment:
| Q |
18 |
ttaagagtgagatcaagctcaattaaattatgtaacctacctaagtcactaggaatccagccactaagagagtttgtgccaaaactaatattttttagag |
117 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
37066530 |
ttaagaatgagatcaagctcaattaaattatgtaacctacctaagtcattaggaatccagccactaagag--ttggtgccaaaactaatattttttagag |
37066433 |
T |
|
| Q |
118 |
tagaaatatttcctagagattgtggaattgtaccatagaaactattctttccaagttttaagacctgcagcattttcaagctgctgatgtgttcaggaat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37066432 |
tagaaatatttcctagagattgtggaattgtaccatagaagctattctttccaagttttaagacctgcagcattttcaagctgctgatgtgttcaggaat |
37066333 |
T |
|
| Q |
218 |
tctgcttacaatcttgtttgatgacaaatcaagaatttgaagctcatctaaattggtaagatttgaaggaaacatcattccttcaaatctgttggaactc |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
37066332 |
tctgcttacaatcttgtttgatgacaaatcaagaatttgaagctcatctaaattggtaagatttgaaggaaacatgattccttcaaatctgttggaactc |
37066233 |
T |
|
| Q |
318 |
atatttagaactctcaaattatatagattggtaatttgctcaggaatgaatcctgtgaactggttatcctgcaattgaagggactgaagagaggacatgt |
417 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37066232 |
atatttagaactctcaaattatagagattggtaatttgctcaggaatgaatcctgtgaactggttatcctgcaattgaagggactgaagagaggacatgt |
37066133 |
T |
|
| Q |
418 |
tacctatataagggcttaagttacctgagagtccgaagcctgaaaggtccaagctagtcactctttggttatgcttgtcacataggacaccagtccaatt |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37066132 |
tacctatataagggcttaagttacctgagagtccgaagcctgaaaggtccaagctagtcactctttggttatgcttgtcacataggacaccagtccaatt |
37066033 |
T |
|
| Q |
518 |
gcaaggagatgaattatggatccaagaggataatgggggaggagaagtgttattattgcttaactgagattttaatgagattaaggcttctttgtctgtg |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
37066032 |
gcaaggagatgaattatggatccaagaggataatgggggaggagaagtgttattattgcttaactgagattttaataagattaaggcttctttgtctgtg |
37065933 |
T |
|
| Q |
618 |
gtaatgcttagaggggttgatgatacaccaactaaaaggttgttgaaatggataaagatcattaataaggcaaaatgaagaagtaaatgagataacaaag |
717 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
37065932 |
gtaatgcttagagtggttgatgatacaccaactaaaaggttgttgaaatggataaagatcattaataaggcaaaatgaagaagtaaatgagagaacaaag |
37065833 |
T |
|
| Q |
718 |
ccatgtttg |
726 |
Q |
| |
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||||||||| |
|
|
| T |
37065832 |
ccatgtttg |
37065824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 332 - 390
Target Start/End: Complemental strand, 41908628 - 41908570
Alignment:
| Q |
332 |
caaattatatagattggtaatttgctcaggaatgaatcctgtgaactggttatcctgca |
390 |
Q |
| |
|
||||||||||| |||||||||||| | ||||||||||||||||| | ||||||||||| |
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|
| T |
41908628 |
caaattatataaattggtaatttggttaggaatgaatcctgtgagtttgttatcctgca |
41908570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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