View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21231_high_11 (Length: 305)
Name: NF21231_high_11
Description: NF21231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21231_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 32177237 - 32176952
Alignment:
| Q |
1 |
cgatggaagatagtcctaagctcgttaacttacacggtgtttttgccaacacttttgaagcacttgagtctcattcactagaggctcttaatagtggaaa |
100 |
Q |
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| T |
32177237 |
cgatggaagatagtcctaagctcgtttacttacacggtgtttttgccaacacttttgaagcacttgagtctcattcactagaggctcttaatagtggaaa |
32177138 |
T |
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| Q |
101 |
agttgtcaaaaatatgcctcctgtatatgcagttggtccttttgttccttttgaatttgaaaaaggtcaaaaggaagcgtcatcaccacggtcgatcaag |
200 |
Q |
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| T |
32177137 |
agttgtcaaaaatatgcctcctgtttatgcagttggtccttttgttccttttgagtttgaaaaaggtcaaaaggaagcgtcatcaccacggtcgatcaag |
32177038 |
T |
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| Q |
201 |
tggcttgatgatcaacctattggttctgtggtgtatgtttgctttggaagcaggactacacttggaagggaacaaatgaaagagat |
286 |
Q |
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| T |
32177037 |
tggcttgatgatcaacctattggttctgtggtgtatgtttgctttggaagcaggactacacttggaagggaacaaatgaaagagat |
32176952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 2 - 286
Target Start/End: Complemental strand, 32184415 - 32184122
Alignment:
| Q |
2 |
gatggaagatagtcctaagctcgttaacttacacggtgtttttgccaacacttttgaagcacttgagtctcattcactagaggctcttaatagtggaaaa |
101 |
Q |
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| T |
32184415 |
gatggaagatagtcctaacctaacaaaactacaaggtgtttttctcaacacctttaaagcacttgaatctcattcactacaagctcttaataatggagaa |
32184316 |
T |
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| Q |
102 |
gttgtcaaaaatatgcctcctgtatatgcagttggtccttttgttccttttgaatttgaaaaag---gtcaaaaggaagcgtc------atcaccacggt |
192 |
Q |
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| T |
32184315 |
gttgttaaaggaatgcctcctgtttatgctgttggtccttttgttcctcttgagtttgagaaagaaagtcaaaaggaaacatcatcagaatcaccaccat |
32184216 |
T |
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| Q |
193 |
cgatcaagtggcttgatgatcaacctattggttctgtggtgtatgtttgctttggaagcaggactacacttggaagggaacaaatgaaagagat |
286 |
Q |
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| T |
32184215 |
tgaccaagtggcttgatgaacaacctattggatctgtggtttatgtttgctttggaagcagaactgcattaggaagggaccaaatgagagagat |
32184122 |
T |
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