View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21231_high_16 (Length: 218)
Name: NF21231_high_16
Description: NF21231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21231_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 16 - 208
Target Start/End: Complemental strand, 42078295 - 42078103
Alignment:
| Q |
16 |
caattgatgtccaaagcaatttgtcgccatatatttaagagaaccgctctcccttgtttcgtgctttaacaactaacatgttttgtttgtactttcttca |
115 |
Q |
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| T |
42078295 |
caattgatgtccaaagcaatttgtcgccatatatttaagagaaccgctctcccttgtttcgtgctttaacaactaacatgttttatttgtacttttttca |
42078196 |
T |
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| Q |
116 |
tccattccgttgttccttccttctccttcattgtaatctctcactctcatttgtaaatttcctccaattttgaattattgtaatagatctgtg |
208 |
Q |
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| T |
42078195 |
tccactttgttgttccttccttctccttcatcgtaatctctcactctcatttgtgaatttcctccaattttgaattattgtaatagatctgtg |
42078103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 114; Significance: 5e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 787640 - 787467
Alignment:
| Q |
16 |
caattgatgtccaaagcaatttgtcgccatatatttaagagaaccgctctcccttgt-ttcgtgctttaacaactaacatgttttgtttgtactttcttc |
114 |
Q |
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| T |
787640 |
caattgatgtccaaagcaatttgtctctatttatttaagagaaccgctttcccctgtgttagtgctttaacaactaacatgttttgtttgtactttcctc |
787541 |
T |
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| Q |
115 |
atccattccgttgttccttccttctccttcattgtaatctctcactctcatttgtaaatttcctccaattttga |
188 |
Q |
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| T |
787540 |
accgtcttcgttgttccttccttctccttcattgtaatctctcactctcatttgttaatttcctccaattttga |
787467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 117
Target Start/End: Original strand, 21082514 - 21082603
Alignment:
| Q |
25 |
tccaaagcaatttgtcgccatatatttaagagaaccgctctcccttgtttcgtgctttaacaactaacatgttttgtttgtactttcttcatc |
117 |
Q |
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|||||||||||||||| | || ||||||| | ||||| ||||||||| |||||||||||||||||| |||||||||| ||||||| ||||| |
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| T |
21082514 |
tccaaagcaatttgtctctatttatttaaca---ccgctttcccttgttccgtgctttaacaactaacgtgttttgtttctactttcatcatc |
21082603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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