View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21231_high_2 (Length: 732)
Name: NF21231_high_2
Description: NF21231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21231_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 677; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 677; E-Value: 0
Query Start/End: Original strand, 1 - 721
Target Start/End: Original strand, 32689377 - 32690097
Alignment:
| Q |
1 |
taatgatcatcaacgataacaaatataaataaaaattatccaacatatgaagccacagatagaaacaaatggttcaataaatgatataagaacctccatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
32689377 |
taatgatcatcaacgataacaaatataaataaaaattatccaacatatgaagccacagatagaaacaaatagttcaataaatgatataagaacctccatc |
32689476 |
T |
|
| Q |
101 |
ttttgaagcatgtcctttaacttttcgcgccgtcgtcttcttgcattctcatctccatcttcaccttcttgagcagctaacttatcactttcaacctcta |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32689477 |
ttttgaagcatgtcctttaacttttcgcgccgccgtcttcttgcattctcatctccatcttcaccttcttgagcagctaacttatcactttcaacctcta |
32689576 |
T |
|
| Q |
201 |
gttttccattacaatgttcacaatggaagtcttcatcttcaaaatatatcaaccgcagtgcatccaaagcattgtatctaaaataattaaaattcccaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32689577 |
gttttccattacaatgttcacaatggaagtcttcatcttcaaaagatattaaccgcagtgcatccaaagcattgtatataaaataattaaaattcccaag |
32689676 |
T |
|
| Q |
301 |
tattatgaaacagaaatacatccatacaaataaaatatctacgacaaaatatgatacagatagtacagtgaattactgagacctttttccacaatttgta |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32689677 |
tattatgaaacagaaatacatccatacaaataaaatatctacgacaaaatatgatacagatagtacagtgaattactgagacctttttccacaatttgta |
32689776 |
T |
|
| Q |
401 |
catatatattcttgaacggtgtttttgttctccaattcatctttcagcttatgcttcatgtgatgcagtctgtacctaaccacatcatatatctgcnnnn |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32689777 |
catatatattcttgaacggtgtttttgttctccaattcatctttcagcttatgcttcatgtgatgcagtctgtacctaaccacatcatatatctgcaaaa |
32689876 |
T |
|
| Q |
501 |
nnnntcacaagtttcctatatatcaggaagcccaaattttgatgtaccgattcaaacaaattgtctgaaaatagggcaaaataacattggttttcccttc |
600 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32689877 |
aaaatcacaagtttcctatatatcaggaagcccaaattttgatgtaccgattcaaacaaattgtctgaaaatagggcaaaataacattggttttcccttc |
32689976 |
T |
|
| Q |
601 |
tctctgcaataaaacaactaaatatcattggtaaagccacagttgaagaatataattagcggagagattgacctgtgcataatctaggcaacagtaagag |
700 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32689977 |
tctctgcaataaaacaactaaatatcattggtaaagccacagttgaagaatataattagcggagagattgacctgtgcataatctaggcaacagtaagag |
32690076 |
T |
|
| Q |
701 |
tgtgtgtgtagcttgaccttt |
721 |
Q |
| |
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||||||||||||||||||||| |
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|
| T |
32690077 |
tgtgtgtgtagcttgaccttt |
32690097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 179 - 372
Target Start/End: Complemental strand, 29829537 - 29829342
Alignment:
| Q |
179 |
aacttatcactttcaacctctagttttccattacaatgttcacaatggaagtcttcatcttcaaaatatatcaaccgca----gtgcatccaaagcattg |
274 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||| || ||||||| |||||||| |||||||||| |||| || ||| ||||||||||||||||| |
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| T |
29829537 |
aacttatcactttcaacctctagtattctattataacgttcacagtggaagtcctcatcttcaagtgatatatactgcatgcagtgcatccaaagcattg |
29829438 |
T |
|
| Q |
275 |
tatctaaaataattaaaattcccaagtattatgaaacagaaatacatccatacaaataaaatatctacgacaaaatatgatacagatagtacagtgaa |
372 |
Q |
| |
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||||||||||| ||||||| |||||||||| | ||| |||||||| |||||||||||||| | ||||||||||||||||| ||| ||||||||| |
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| T |
29829437 |
tatctaaaatagttaaaatccccaagtattgtaaaaacttaatacatcgatacaaataaaataac--cgacaaaatatgatacatataatacagtgaa |
29829342 |
T |
|
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