View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21231_high_3 (Length: 470)
Name: NF21231_high_3
Description: NF21231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21231_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 19 - 450
Target Start/End: Original strand, 40161760 - 40162198
Alignment:
| Q |
19 |
ctttggacggctgaaacatattggggagaaattagattagatatgcgaagaacataaattagagaaacagaaaattggaattgaaattgaaatgaagatg |
118 |
Q |
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| T |
40161760 |
ctttggacggctgaaacatattggggagaaattagattagatatgcgaagaacataaattagagaaacagaaaattggaattgaaattgaaatgaagatg |
40161859 |
T |
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| Q |
119 |
taaagtggttactatttctcgacccatggttgagtgctctgaatgattggcgccatattagtaattttctcttcacacacgattctctgctactatacta |
218 |
Q |
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| T |
40161860 |
taaagtggttactatttctcgacccatggttgagtgctctgaatgattggcgccatattagtaattttctcttcacacacgattctctgctactatacta |
40161959 |
T |
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| Q |
219 |
gtactagttgcagccggtggtggggggtat-----ttgtgtgatacagattctctgcggtcaaagaaatcctgcatttacacagtcaggcaaatttgagc |
313 |
Q |
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| T |
40161960 |
gtactagttgcagccggtggtggggggtatttgtgttgtgtgatacagattctctgcggtcaaagaaatcctgaatttacacagtcaggcaaatgtgagc |
40162059 |
T |
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| Q |
314 |
cgtgtgattcatctaatggttcaaatacaacatgttacaatattcctctctttgataaattcac--aacattttataccttatctctcttaaacaaacga |
411 |
Q |
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| T |
40162060 |
cgtgtgattcatctaatggttcaaatacaacatgttacaatattcctctctttgataaattcacaaaacattttataccttatctctcttaaacaaacga |
40162159 |
T |
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| Q |
412 |
aaaacgcatcatgttcctcttgaacaagaacaaagatac |
450 |
Q |
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| T |
40162160 |
aaagcgcatcatgttcctcttgaacaagaacaaagatac |
40162198 |
T |
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