View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21231_high_4 (Length: 466)
Name: NF21231_high_4
Description: NF21231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21231_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 397; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 40 - 448
Target Start/End: Original strand, 37201211 - 37201619
Alignment:
| Q |
40 |
tacagctaaactagttgtaaaatcgagagttaattaattttatcgggttttacttgatctcataagagtttataacaagagagtttacaagcaggttaac |
139 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37201211 |
tacaactaaactagttgtaaaatcgagagttaattaattttatcgggttttacttgatctcataagagtttataacaagagagtttacaagcaggttaat |
37201310 |
T |
|
| Q |
140 |
ttgttttcacgacctagaattgcaaactcgtcagagtttaaaagttaactgaacagcttaacaaccttggtctgaaagatagaaatctcaactaactgac |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37201311 |
ttgttttcacgacctagaattgcaaactcgtcagagtttaaaagttaactgaacagcttaacaaccttggtctgaaagatagaaatctcaactaactgac |
37201410 |
T |
|
| Q |
240 |
tatgtagcttcttatatgcttaattaatgtgtggcttttactttatcttaactgtgctaaagggtttctgtatatagaaccagctcttgtagacatgcaa |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37201411 |
tatgtagcttcttatatgcttaattaatgtgtggcttttactttatcttaactgtgctaaagggtttctgtatatagaaccagctcttgtagacatgcaa |
37201510 |
T |
|
| Q |
340 |
aagttatgttacttttcctgtgaacagttcctaaagcataatcaatggaggacttgcaaatgtgtagtccaagattatgctcttctatcacaaagaaaac |
439 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
37201511 |
aagttatgttacttttcctgtgaacagttcctaaagcataatcaatggaggacttgcaaatgtgcagtccaagattatgctcttctatcacaaagaaaac |
37201610 |
T |
|
| Q |
440 |
tgtgtaatg |
448 |
Q |
| |
|
||||||||| |
|
|
| T |
37201611 |
tgtgtaatg |
37201619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 332 - 403
Target Start/End: Original strand, 37211067 - 37211139
Alignment:
| Q |
332 |
acatgcaaaagttatgttacttttcctgtgaacagttcc-taaagcataatcaatggaggacttgcaaatgtg |
403 |
Q |
| |
|
||||||||||| ||||||||||||| ||||| || |||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
37211067 |
acatgcaaaaggtatgttacttttcttgtgagcatttccctaaagcacaatcaatggaggacttgcaaatgtg |
37211139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 241 - 310
Target Start/End: Original strand, 37216444 - 37216509
Alignment:
| Q |
241 |
atgtagcttcttatatgcttaattaatgtgtggcttttactttatcttaactgtgctaaagggtttctgt |
310 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
37216444 |
atgtagcttcttatatgcttaatt----tgtggctcttattttatcttaactgtgctaaagggtttctgt |
37216509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 382 - 431
Target Start/End: Original strand, 37216577 - 37216626
Alignment:
| Q |
382 |
caatggaggacttgcaaatgtgtagtccaagattatgctcttctatcaca |
431 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||||| ||| ||||| |
|
|
| T |
37216577 |
caatggaggacttgcaaatgtatagttcaagattatgctcgtctttcaca |
37216626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 399
Target Start/End: Original strand, 37182405 - 37182473
Alignment:
| Q |
332 |
acatgcaaaagttatgttacttttcctgtgaacagttcctaaagcataatcaatgga-ggacttgcaaa |
399 |
Q |
| |
|
||||| ||||| ||| ||| |||||||||||| | ||||||||||| ||| |||||| ||||||||||| |
|
|
| T |
37182405 |
acatgaaaaaggtatcttaattttcctgtgaatatttcctaaagcacaattaatggatggacttgcaaa |
37182473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 399
Target Start/End: Original strand, 37193537 - 37193605
Alignment:
| Q |
332 |
acatgcaaaagttatgttacttttcctgtgaacagttcctaaagcataatcaatgga-ggacttgcaaa |
399 |
Q |
| |
|
||||| ||||| ||| ||| |||||||||||| | ||||||||||| ||| |||||| ||||||||||| |
|
|
| T |
37193537 |
acatgaaaaaggtatcttaattttcctgtgaatatttcctaaagcacaattaatggatggacttgcaaa |
37193605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 41
Target Start/End: Original strand, 37200314 - 37200342
Alignment:
| Q |
13 |
cagattaacagataacttgaacacaggta |
41 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
37200314 |
cagattaacagataacttgaacacaggta |
37200342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 8e-25; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 334 - 432
Target Start/End: Complemental strand, 415357 - 415260
Alignment:
| Q |
334 |
atgcaaaagttatgttacttttcctgtgaacagttcctaaagcataatcaatggaggacttgcaaatgtgtagtccaagattatgctcttctatcacaa |
432 |
Q |
| |
|
||||||||| | ||||||||||| ||| |||| ||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
415357 |
atgcaaaaggtgtgttacttttcttgtaaacatttcctaaagcacaatcaatggagga-ttgcaaatgtgtaatccaagattatgctcttctctcacaa |
415260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 334 - 403
Target Start/End: Original strand, 7526835 - 7526906
Alignment:
| Q |
334 |
atgcaaaagttatgttacttttcct-gtgaacagttcc-taaagcataatcaatggaggacttgcaaatgtg |
403 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||| |||| ||||||| ||||||||||||||| |||| |||| |
|
|
| T |
7526835 |
atgcaaaaggtatgttacttttccttgtgaacatttccctaaagcacaatcaatggaggactggcaattgtg |
7526906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 300
Target Start/End: Original strand, 7526779 - 7526816
Alignment:
| Q |
263 |
ttaatgtgtggcttttactttatcttaactgtgctaaa |
300 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
7526779 |
ttaatgtgtggctttcattttatcttaactgtgctaaa |
7526816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University