View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21231_high_7 (Length: 335)

Name: NF21231_high_7
Description: NF21231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21231_high_7
NF21231_high_7
[»] chr5 (3 HSPs)
chr5 (18-315)||(12249056-12249352)
chr5 (35-152)||(12249755-12249873)
chr5 (34-101)||(12244413-12244481)
[»] chr7 (1 HSPs)
chr7 (158-315)||(33422766-33422922)
[»] chr8 (2 HSPs)
chr8 (158-315)||(16933139-16933296)
chr8 (164-271)||(13885965-13886072)
[»] chr4 (1 HSPs)
chr4 (158-315)||(43981848-43981997)
[»] chr2 (3 HSPs)
chr2 (158-297)||(15939878-15940015)
chr2 (160-299)||(38136490-38136628)
chr2 (162-201)||(15939808-15939847)


Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 315
Target Start/End: Original strand, 12249056 - 12249352
Alignment:
Q  18 catagggtcgaagtaacgaaaagtatatgatattggagagacgaattatttgaaaattttcaacaaaaaataaattcagtttaatttatcaaagagcagt 117  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||    
T  12249056 catagggtcgaagtaatgaaaagtatatgatattggagagacgaattatttgaaaattttcaacaaaaaataaattcagattattttatcaaagaacagt 12249155  T
Q  118 tggatgaaaagacactaatactaagttcaaaaaataaattaagtactttaaattaatggatacatatgtagaagtaatgatatctctacaaacaatttat 217  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||    
T  12249156 tggatgaaaagacactaatacta-gttcaaaatataaattaagtactttaaattaatggaaacatacgtagaagtaatgatatctctgcaaacaatttat 12249254  T
Q  218 aatgataattaagacatgcaacttgtgtagagatgtttatactatatgaaacattggtttttaaattaaaaaattgttaatgtgttagcatagtacat 315  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||| |||||||||    
T  12249255 aatgataattaagacgtgcaatttgtgtagagatgtttatactatatgaaacattgattttttaattaaaatattgttaatgtgttagtatagtacat 12249352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 35 - 152
Target Start/End: Original strand, 12249755 - 12249873
Alignment:
Q  35 gaaaagtatatgatattggagagacgaattatttgaaaattttcaacaaaaa-ataaattcagtttaatttatcaaagagcagttggatgaaaagacact 133  Q
    ||||| ||||||||||||||| |||| ||||||||||||||||||||||||| |||||||| |||||||| ||   |||||| |||||||||| |||| |    
T  12249755 gaaaaatatatgatattggagggacggattatttgaaaattttcaacaaaaagataaattccgtttaattaattgtagagcatttggatgaaacgacagt 12249854  T
Q  134 aatactaagttcaaaaaat 152  Q
     ||||||||||||| ||||    
T  12249855 gatactaagttcaagaaat 12249873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 34 - 101
Target Start/End: Original strand, 12244413 - 12244481
Alignment:
Q  34 cgaaaagtatatgatattggagagacgaattatttgaaaattttcaacaaaaa-ataaattcagtttaa 101  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  12244413 cgaaaagtatatgatactggagagacgaattatttgaaaattttcaacaaaaagataaattccgtttaa 12244481  T

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Target: chr7 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 158 - 315
Target Start/End: Original strand, 33422766 - 33422922
Alignment:
Q  158 aagtactttaaattaatggatacatatgtagaagtaatgatatctctacaaacaatttataatgataattaagacatgcaacttgtgtagagatgtttat 257  Q
    ||||| ||||| |||||||||||||||||||||||| || |||||||| | |||||||||||||||||||||||| || || |||||||||||| |||||    
T  33422766 aagtaatttaagttaatggatacatatgtagaagtattggtatctctagacacaatttataatgataattaagacgtgtaa-ttgtgtagagatatttat 33422864  T
Q  258 actatatgaaacattggtttttaaattaaaaaattgttaatgtgttagcatagtacat 315  Q
    ||||||| |||||||||||||| | |||||||||||||||||| |||| |||||||||    
T  33422865 actatataaaacattggtttttcacttaaaaaattgttaatgtattagtatagtacat 33422922  T

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Target: chr8 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 158 - 315
Target Start/End: Original strand, 16933139 - 16933296
Alignment:
Q  158 aagtactttaaattaatggatacatatgtagaagtaatgatatctctacaaacaatttataatgataattaagacatgcaacttgtgtagagatgtttat 257  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||| || |||||||||||||||||||||||| ||||| |||||||||||| |||||    
T  16933139 aagtactttaaattaatgaatacatatgtagaagtaatggtatctctccagacaatttataatgataattaagacgtgcaatttgtgtagagatatttat 16933238  T
Q  258 actatatgaaacattggtttttaaattaaaaaattgttaatgtgttagcatagtacat 315  Q
    |||| || |||||| ||||||| ||| || ||| ||||||| | |||| |||| ||||    
T  16933239 actacataaaacatcggttttttaatgaataaactgttaatatcttagtatagaacat 16933296  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 271
Target Start/End: Complemental strand, 13886072 - 13885965
Alignment:
Q  164 tttaaattaatggatacatatgtagaagtaatgatatctctacaaacaatttataatgataattaagacatgcaacttgtgtagagatgtttatactata 263  Q
    ||||||||||| || ||||||||||||| ||| ||||||||| | ||| |||||| ||||| ||||||| || || ||||||||| || |||||||||||    
T  13886072 tttaaattaatagacacatatgtagaagaaataatatctctagacacattttatattgatagttaagacgtggaatttgtgtagaaatatttatactata 13885973  T
Q  264 tgaaacat 271  Q
    | ||||||    
T  13885972 taaaacat 13885965  T

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Target: chr4 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 158 - 315
Target Start/End: Complemental strand, 43981997 - 43981848
Alignment:
Q  158 aagtactttaaattaatggatacatatgtagaagtaatgatatctctacaaacaatttataatgataattaagacatgcaacttgtgtagagatgtttat 257  Q
    ||||| ||||||| |||||||||||||||| | |||||| |||||||||| |||||||||||||||||||||| | |||||  ||||||||||| || ||    
T  43981997 aagtaatttaaatgaatggatacatatgtata-gtaatggtatctctacagacaatttataatgataattaaggcgtgcaatatgtgtagagatattcat 43981899  T
Q  258 actatatgaaacattggtttttaaattaaaaaattgttaatgtgttagcatagtacat 315  Q
    ||       |||||   ||||| |||||||||||||||||||||||||||||||||||    
T  43981898 ac-------aacatcaattttttaattaaaaaattgttaatgtgttagcatagtacat 43981848  T

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Target: chr2 (Bit Score: 64; Significance: 6e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 158 - 297
Target Start/End: Complemental strand, 15940015 - 15939878
Alignment:
Q  158 aagtactttaaattaatggatacatatgtagaagtaatgatatctctacaaacaatttataatgataattaagacatgcaacttgtgtagagatgtttat 257  Q
    ||||||||||||  |||||||||||||||| | ||||||||||||| ||| | |||||||||||||| |||||||||||||  ||| ||||||| || ||    
T  15940015 aagtactttaaaagaatggatacatatgtata-gtaatgatatctc-acagaaaatttataatgatagttaagacatgcaatatgtttagagatattcat 15939918  T
Q  258 actatatgaaacattggtttttaaattaaaaaattgttaa 297  Q
    ||||||| ||||||  |||||| |||||||||||||||||    
T  15939917 actatataaaacatcagttttttaattaaaaaattgttaa 15939878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 160 - 299
Target Start/End: Original strand, 38136490 - 38136628
Alignment:
Q  160 gtactttaaattaatggatacatatgtagaagtaatgatatctctacaaacaatttataatgataattaagacatgcaacttgtgtagagatgtttatac 259  Q
    ||||||||||||||| |||||| | |||||||||||| ||| | ||||  ||||||||||||||||||||||| ||||| || ||||||||| |||| ||    
T  38136490 gtactttaaattaatagatacagaagtagaagtaatggtat-tgtacatccaatttataatgataattaagacgtgcaatttctgtagagatatttacac 38136588  T
Q  260 tatatgaaacattggtttttaaattaaaaaattgttaatg 299  Q
    ||||| |||||| | |||||  |||||||| |||||||||    
T  38136589 tatataaaacatcgatttttttattaaaaatttgttaatg 38136628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 162 - 201
Target Start/End: Complemental strand, 15939847 - 15939808
Alignment:
Q  162 actttaaattaatggatacatatgtagaagtaatgatatc 201  Q
    |||||||||||||||||||||||||| |||||||| ||||    
T  15939847 actttaaattaatggatacatatgtaaaagtaatggtatc 15939808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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