View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21231_high_8 (Length: 330)
Name: NF21231_high_8
Description: NF21231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21231_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 13715210 - 13715477
Alignment:
| Q |
1 |
taaaaaagttcttatgtatgtgcttaagatcagtttcaatcaatgaccataataattatgtgatttagctatatattggtatgactacttatttgaaacc |
100 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
13715210 |
taaaaaagttcttgtgtatgtacttaagatcagtttcaatcaatgaccataataattatgtgatttagctatatattggtatgactacttatttaaaacc |
13715309 |
T |
|
| Q |
101 |
atcaccatttcaatggaactactgtaggggagttgttgaatagtattgatatnnnnnnnnnnnnngtaccaagagagagaaagagcaatgaaggagatag |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
13715310 |
atcaccatttcaatgga---actgtaggggagttgttgaatagtattgatataaaaatgaaaaaagtaccaagagagagaaagagcaatgaaggagatag |
13715406 |
T |
|
| Q |
201 |
agttggtgatggcttagataaggtgtgggtagagtatgataagatttggtggattgtctaatctaaacatt |
271 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13715407 |
agttggtgatggcttagatagggtgtgggtagagtatgataagatttggtggattgtctaatctaaacatt |
13715477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 2 - 271
Target Start/End: Complemental strand, 4848802 - 4848536
Alignment:
| Q |
2 |
aaaaaagttcttatgtatgtgcttaagatcagtttcaatcaatgaccataataattatgtgatttagctatatattggtatgactacttatttgaaacca |
101 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
4848802 |
aaaaaagttcttgtgtatgtgcttaagatcagtttcaatcaatgaccataataattatgtgatttagctatatattggtatgactgcttatttgaaacca |
4848703 |
T |
|
| Q |
102 |
tcaccatttcaatggaactactgtaggggagttgttgaatagtattgatatnnnnnnnnnnnnngtaccaagagagagaaagagcaatgaaggagataga |
201 |
Q |
| |
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|||||||||||||| | |||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4848702 |
tcaccatttcaatg---caactgcaggggagttgttgaataatattgatataaaaataaaaaaagtaccaagagagagaaagagcaatgaaggagataga |
4848606 |
T |
|
| Q |
202 |
gttggtgatggcttagataaggtgtgggtagagtatgataagatttggtggattgtctaatctaaacatt |
271 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||| ||||||| |||||||||||||| |
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|
| T |
4848605 |
gttggtgatggcttagatagagtctgggtagagtatgataagatttgatggattgcctaatctaaacatt |
4848536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 175 - 304
Target Start/End: Complemental strand, 14659154 - 14659024
Alignment:
| Q |
175 |
gagagaaagagcaatgaaggagatagagttggtgatggcttagataaggtgtgggtagagtatgataagatttggtggattgtctaatctaaacattnnn |
274 |
Q |
| |
|
|||||| ||| ||||||| |||||||||||| |||||||| |||| |||||| |||||||||||||||||| ||||| |||||||||||||||| |
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|
| T |
14659154 |
gagagagagaacaatgaaagagatagagttgatgatggctaagatttagtgtggatagagtatgataagatttcatggatagtctaatctaaacattaaa |
14659055 |
T |
|
| Q |
275 |
nnnnttggtccatcatgg-ccaattcttcaa |
304 |
Q |
| |
|
||| |||||||||| |||||||||||| |
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|
| T |
14659054 |
aaaattgatccatcatggaccaattcttcaa |
14659024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 45907975 - 45908240
Alignment:
| Q |
1 |
taaaaaagttcttatgtatgtgcttaagatcagtttcaatcaatgaccataataattatgtgatttagctatatattggtatgactacttatttgaaacc |
100 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45907975 |
taaaaaagttcttgtgaatgtgcttaagatcagtttcaatcaatgaccataataattatgtgatttagctatatattggtatgactacttatttgaaacc |
45908074 |
T |
|
| Q |
101 |
atcaccatttcaatggaactactgtaggggagttgttgaatagtattgatatnnnnnnnnnnnnngtaccaagagagagaaagagcaatgaaggagatag |
200 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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|
| T |
45908075 |
atcaccatttcaatgga---actgcaggggagttgttgaatagtattgatataaaaatgaaaaaagtaccaagagagagaaagagcaatgaag--gatag |
45908169 |
T |
|
| Q |
201 |
agttggtgatggcttagataaggtgtgggtagagtatgataagatttggtggattgtctaatctaaacatt |
271 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45908170 |
agttggtgatggcttagatagggtgtgggtagagtatgataagatttggtggattgtctaatctaaacatt |
45908240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 114; Significance: 9e-58; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 17 - 152
Target Start/End: Complemental strand, 22917351 - 22917219
Alignment:
| Q |
17 |
tatgtgcttaagatcagtttcaatcaatgaccataataattatgtgatttagctatatattggtatgactacttatttgaaaccatcaccatttcaatgg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
22917351 |
tatgtgcttaagatcagtttcaatcaatgaccataataattatgtgatttagctatatattggtatgactacttatttgaaaccatcaccctttcaatgg |
22917252 |
T |
|
| Q |
117 |
aactactgtaggggagttgttgaatagtattgatat |
152 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||| |
|
|
| T |
22917251 |
aactac---atgggagttgttgaatagtattgatat |
22917219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 166 - 311
Target Start/End: Original strand, 4784994 - 4785140
Alignment:
| Q |
166 |
gtaccaagagagagaaagagcaatgaaggagatagagttggtgatggcttagataaggtgtgggtagagtatgataagatttggtggattgtctaatcta |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4784994 |
gtaccaagagagagaaagagcaatgaaggagatagagttggtgatggcttagatagagtgtgggtagagtatgataagatttggtggattgtctaatcta |
4785093 |
T |
|
| Q |
266 |
aacattnnnnnnnttggtccatcatgg-ccaattcttcaactcgtcc |
311 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||| |||| |
|
|
| T |
4785094 |
cacattaaaaaaattggtccatcatggaccaattcttcaactggtcc |
4785140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 4784152 - 4784274
Alignment:
| Q |
1 |
taaaaaagttcttatgtatgtgcttaagatcagtttcaatcaatgaccataataattatgtgatttagctatatattggtatgac---tacttatttgaa |
97 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
4784152 |
taaaaaagttctcgtgtatgtgcttaagatcagtttcaatcaatgaccataataattatgtgatttagctatatattggtatgactagtacttgtttgaa |
4784251 |
T |
|
| Q |
98 |
accatcaccatttcaatggaact |
120 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
4784252 |
accatcaccatttcaatggaact |
4784274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 166 - 271
Target Start/End: Complemental strand, 22917186 - 22917074
Alignment:
| Q |
166 |
gtaccaagagagagaaagagcaatgaaggagatagagttggtgatggcttagataaggtgtgggtagagtatg-------ataagatttggtggattgtc |
258 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
22917186 |
gtaccaagagagagaaagagcaaggaaggagatagagttggtgatggcttagatagggtgtgggtagagtatgataactgataagatttggtggattgtc |
22917087 |
T |
|
| Q |
259 |
taatctaaacatt |
271 |
Q |
| |
|
||||||||||||| |
|
|
| T |
22917086 |
taatctaaacatt |
22917074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 5320150 - 5320185
Alignment:
| Q |
17 |
tatgtgcttaagatcagtttcaatcaatgaccataa |
52 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5320150 |
tatgtgcttgagatcagtttcaatcaatgaccataa |
5320185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 166 - 311
Target Start/End: Original strand, 39773695 - 39773841
Alignment:
| Q |
166 |
gtaccaagagagagaaagagcaatgaaggagatagagttggtgatggcttagataaggtgtgggtagagtatgataagatttggtggattgtctaatcta |
265 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
39773695 |
gtaccaagagagaaaaagagcaatgaaggagatagagttggtgatggcttagatagggtgtgggtagagtatgatatgatttggtggattgtctaatcta |
39773794 |
T |
|
| Q |
266 |
aacattnnnnnnnttggtccatcatgg-ccaattcttcaactcgtcc |
311 |
Q |
| |
|
|||||| |||| ||||||||| |||||||||||||| |||| |
|
|
| T |
39773795 |
aacattaaaaaaattggcccatcatggaccaattcttcaactggtcc |
39773841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 3 - 97
Target Start/End: Original strand, 39773556 - 39773650
Alignment:
| Q |
3 |
aaaaagttcttatgtatgtgcttaagatcagtttcaatcaatgaccataataattatgtgatttagctatatattggtatgactacttatttgaa |
97 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39773556 |
aaaaagttcttgtgtatgtgcttaagatcagtttcaatcaatgaccataataattatgtgatttagctatatattggtatgactacttatttgaa |
39773650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 175 - 304
Target Start/End: Complemental strand, 6127220 - 6127090
Alignment:
| Q |
175 |
gagagaaagagcaatgaaggagatagagttggtgatggcttagataaggtgtgggtagagtatgataagatttggtggattgtctaatctaaacattnnn |
274 |
Q |
| |
|
|||||| ||| ||||||| |||||||||||| |||||||| |||| |||||| |||| |||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
6127220 |
gagagagagaacaatgaaagagatagagttgatgatggctaagatttagtgtggatagaatatgataagatttgatggatagtctaatctaaacattaaa |
6127121 |
T |
|
| Q |
275 |
nnnnttggtccatcatgg-ccaattcttcaa |
304 |
Q |
| |
|
|||||||||||||| |||||||||||| |
|
|
| T |
6127120 |
aaaattggtccatcatggaccaattcttcaa |
6127090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 177 - 271
Target Start/End: Complemental strand, 44398368 - 44398274
Alignment:
| Q |
177 |
gagaaagagcaatgaaggagatagagttggtgatggcttagataaggtgtgggtagagtatgataagatttggtggattgtctaatctaaacatt |
271 |
Q |
| |
|
|||| ||| ||||||| |||||||||||||| |||||| |||| |||||| ||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
44398368 |
gagagagaacaatgaaagagatagagttggtaatggctaagatttagtgtggatagagtatgataagatttgatggatagtctaatctaaacatt |
44398274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 186 - 267
Target Start/End: Complemental strand, 43810969 - 43810888
Alignment:
| Q |
186 |
caatgaaggagatagagttggtgatggcttagataaggtgtgggtagagtatgataagatttggtggattgtctaatctaaa |
267 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||| |||||| |||||| ||||||||||| ||||| |||||||||||| |
|
|
| T |
43810969 |
caatgaaagagatagagttggtgatggctaagatttagtgtggatagagttcgataagatttgatggatagtctaatctaaa |
43810888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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