View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21231_low_1 (Length: 796)

Name: NF21231_low_1
Description: NF21231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21231_low_1
NF21231_low_1
[»] chr4 (8 HSPs)
chr4 (130-780)||(54004290-54004932)
chr4 (368-780)||(53988594-53988995)
chr4 (16-89)||(54004189-54004262)
chr4 (682-759)||(8418258-8418336)
chr4 (679-755)||(17467935-17468012)
chr4 (680-733)||(24177997-24178050)
chr4 (679-763)||(28495428-28495513)
chr4 (688-725)||(47109766-47109803)
[»] chr3 (6 HSPs)
chr3 (678-763)||(29383057-29383143)
chr3 (679-763)||(16776795-16776880)
chr3 (679-725)||(15095242-15095289)
chr3 (678-759)||(20113325-20113408)
chr3 (678-755)||(12918754-12918832)
chr3 (678-763)||(35938408-35938490)
[»] chr5 (5 HSPs)
chr5 (678-763)||(26699360-26699445)
chr5 (678-763)||(26969093-26969178)
chr5 (678-759)||(30117156-30117238)
chr5 (679-760)||(37700137-37700219)
chr5 (678-725)||(39971057-39971105)
[»] chr1 (8 HSPs)
chr1 (678-763)||(5966616-5966702)
chr1 (678-756)||(50074453-50074532)
chr1 (678-763)||(26768428-26768514)
chr1 (699-763)||(15624804-15624868)
chr1 (678-755)||(4389652-4389730)
chr1 (681-733)||(35693108-35693161)
chr1 (699-733)||(4371702-4371736)
chr1 (678-763)||(46083910-46083995)
[»] scaffold0280 (1 HSPs)
scaffold0280 (698-763)||(270-335)
[»] chr2 (8 HSPs)
chr2 (679-763)||(4897651-4897736)
chr2 (679-763)||(4945045-4945130)
chr2 (679-763)||(12296337-12296422)
chr2 (678-759)||(12969554-12969636)
chr2 (699-763)||(27725601-27725665)
chr2 (700-755)||(21522929-21522984)
chr2 (698-733)||(26273494-26273529)
chr2 (705-758)||(14493726-14493779)
[»] chr7 (7 HSPs)
chr7 (700-763)||(28017009-28017072)
chr7 (678-763)||(18312232-18312318)
chr7 (679-728)||(20307481-20307530)
chr7 (678-755)||(30534748-30534826)
chr7 (678-755)||(32964311-32964389)
chr7 (678-732)||(47534843-47534897)
chr7 (679-759)||(2087201-2087282)
[»] chr8 (4 HSPs)
chr8 (678-759)||(30734688-30734770)
chr8 (684-763)||(24260862-24260942)
chr8 (698-763)||(30512831-30512897)
chr8 (698-733)||(19701167-19701202)
[»] scaffold0074 (1 HSPs)
scaffold0074 (699-754)||(55993-56048)
[»] chr6 (2 HSPs)
chr6 (700-763)||(8646113-8646176)
chr6 (678-755)||(6418568-6418646)
[»] scaffold0072 (1 HSPs)
scaffold0072 (705-755)||(47226-47276)


Alignment Details
Target: chr4 (Bit Score: 484; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 130 - 780
Target Start/End: Original strand, 54004290 - 54004932
Alignment:
Q  130 tgattagtgagtttgaatttgaaacctttgaagttgttgggtgatggaaaaccagagccggagggttgaggagaaagaagaggagcatacaaaaaagtat 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54004290 tgattagtgagtttgaatttgaaacctttgaagttgttgggtgatggaaaaccagagccggagggttgaggagaaagaagaggagcatacaaaaaagtat 54004389  T
Q  230 cagacttaagataatccaaaaacttcttcaccaatggtttctttccgctgcgcttaattggtttcttgttttgaactcttaaacgatgatttctgttatc 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54004390 cagacttaagataatccaaaaacttcttcaccaatggtttctttccgctgcgcttaattggtttcttgttttgaactcttaaacgatgatttctgttatc 54004489  T
Q  330 cattttcttcaatttctttgaatccgaccaaaatgcacaagatttggagaagtctaggaaaaaggtatggacaacgttgttttgtttgttttgttggcgg 429  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  54004490 cattttcttctttttctttgaatccgaccaaaatgcacaagatttggagaagtctaggaaaaaggtatggacaaagttgttttgtttgttttgttggcgg 54004589  T
Q  430 tttacaaacgacacacgtgtccgttttgaggtaaccgctactgtcacgtgtcaaattcgttttctgaatacccatgcccatgcccatgcatgcagcccaa 529  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||            ||||||||||||||||||    
T  54004590 tttacaaacgacacacgtgtccgttttgaggttaccgctactgtcacgtgtcaaattcattttctgaata------------cccatgcatgcagcccaa 54004677  T
Q  530 tcagccatgtttggtgcttattactttcctgacccccttctttgctcacagaccctccagatttttcgaacagtta-ttattannnnnnnacaaaa-agg 627  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||        |||||| |||    
T  54004678 tcggccatgtttggtgcttattactttcctgacccccttctttgctcacagaccctccagatttttcgaacagttattttttttttttttacaaaagagg 54004777  T
Q  628 gcaaaagtccatcaaacagttctttaaatataagtccatttt-nnnnnnngtttgtctctttttacaaga-tcctttgatattttcaagtacattaatta 725  Q
    |||||||| |||||||||||||||||||||||| ||||||||        |||||||||||||||||| | || ||||||||||||||||||||||||||    
T  54004778 gcaaaagtgcatcaaacagttctttaaatataaatccattttaaaaaaaagtttgtctctttttacaatattcttttgatattttcaagtacattaatta 54004877  T
Q  726 attatttatcaatattctcctatttattttatatctttaccgacatgcccctttg 780  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  54004878 attatttattaatattctcctatttattttatatctttaccgacatgcccttttg 54004932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 368 - 780
Target Start/End: Complemental strand, 53988995 - 53988594
Alignment:
Q  368 aagatttggagaagtctaggaaaaaggtatggacaacgttgttttgtttgttttgttggcggtttacaaacgacacacgtgtccgttttgaggtaaccgc 467  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||    
T  53988995 aagatttggagaagtctaggaaaaaggtatggacaacgttgttttgtttgttttgttggcggtttacaaacg--acacgtgtccgttttgaggttaccgc 53988898  T
Q  468 tactgtcacgtgtcaaattcgttttctgaatacccatgcccatgcccatgcatgcagcccaatcagccatgtttggtgcttattactttcctgaccccct 567  Q
    |||||||||||||||||||| |||||||||||            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  53988897 tactgtcacgtgtcaaattcattttctgaata------------cccatgcatgcagcccaatcggccatgtttggtgcttattactttcctgaccccct 53988810  T
Q  568 tctttgctcacagaccctccagatttttcgaacagttattattannnnnnnacaaaa-agggcaaaagtccatcaaacagttctttaaatataagtccat 666  Q
    ||||||||||||||||||||||||||||||||||||||||  |        |||||| ||| ||||||| ||||||||||||||||||||||||||||||    
T  53988809 tctttgctcacagaccctccagatttttcgaacagttatttgtttttttttacaaaagaggacaaaagtgcatcaaacagttctttaaatataagtccat 53988710  T
Q  667 ttt-nnnnnnngtttgtctctttttacaagatcc-tttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttta 764  Q
    |||        |||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  53988709 tttaaaaaaaagtttgtctctttttacaatatccttttgatattttcaagcacattaattaattatttatcaatattctcctatttattttatatcttta 53988610  T
Q  765 ccgacatgcccctttg 780  Q
    ||||||||||||||||    
T  53988609 ccgacatgcccctttg 53988594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 54004189 - 54004262
Alignment:
Q  16 cattaaaccagtgcctctcttttataggtcttttcagctccaccactgtgatcataaacaaattaacacctcat 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54004189 cattaaaccagtgcctctcttttataggtcttttcagctccaccactgtgatcataaacaaattaacacctcat 54004262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 682 - 759
Target Start/End: Complemental strand, 8418336 - 8418258
Alignment:
Q  682 tctctttttacaagatcc-tttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatat 759  Q
    |||||||||| ||||||| |||| |||||||||||||||||||||||| |||| ||| || | ||||||||||||||||    
T  8418336 tctctttttataagatccatttggtattttcaagtacattaattaattctttaccaacatacccctatttattttatat 8418258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 679 - 755
Target Start/End: Original strand, 17467935 - 17468012
Alignment:
Q  679 ttgtctctttttacaagatcc-tttgatattttcaagtacattaattaattatttatcaatattctcctatttatttt 755  Q
    ||||| ||||||| ||||||| |||| ||||||||||||||||||||| || |||| ||| || | | ||||||||||    
T  17467935 ttgtccctttttataagatccctttggtattttcaagtacattaattatttctttaccaacatacccttatttatttt 17468012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 680 - 733
Target Start/End: Complemental strand, 24178050 - 24177997
Alignment:
Q  680 tgtctctttttacaagatcctttgatattttcaagtacattaattaattattta 733  Q
    |||| ||||||| |||| | |||||||||||||||| ||||||||| |||||||    
T  24178050 tgtccctttttataagaccttttgatattttcaagtgcattaattatttattta 24177997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 679 - 763
Target Start/End: Original strand, 28495428 - 28495513
Alignment:
Q  679 ttgtctctttttacaagatcctt-tgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 763  Q
    ||||| ||||||| ||||||| | || ||||| ||||| ||||||||| ||||||| ||| || | ||||||||||||| ||||||    
T  28495428 ttgtccctttttataagatccatctggtatttccaagttcattaattatttatttaccaacatacccctatttattttacatcttt 28495513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 688 - 725
Target Start/End: Complemental strand, 47109803 - 47109766
Alignment:
Q  688 tttacaagatcctttgatattttcaagtacattaatta 725  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  47109803 tttataagatcctttggtattttcaagtacattaatta 47109766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 8e-20; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 678 - 763
Target Start/End: Original strand, 29383057 - 29383143
Alignment:
Q  678 tttgtctctttttacaagatcc-tttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 763  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||| ||| || | | ||||||||||||||||||    
T  29383057 tttgtctctttttataagatccctttgatattttcaagtacattaattaattctttaccaacatacccttatttattttatatcttt 29383143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 679 - 763
Target Start/End: Complemental strand, 16776880 - 16776795
Alignment:
Q  679 ttgtctctttttacaagatcc-tttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 763  Q
    ||||||||||||| |||| || |||| ||||| |||||||||||||||||| |||| |||||| | ||||||||||||||||||||    
T  16776880 ttgtctctttttataagacccctttgctatttccaagtacattaattaattctttaccaatatacccctatttattttatatcttt 16776795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 679 - 725
Target Start/End: Original strand, 15095242 - 15095289
Alignment:
Q  679 ttgtctctttttacaagatcc-tttgatattttcaagtacattaatta 725  Q
    ||||| ||||||| ||||||| ||||||||||||||||||||||||||    
T  15095242 ttgtccctttttataagatccctttgatattttcaagtacattaatta 15095289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 678 - 759
Target Start/End: Complemental strand, 20113408 - 20113325
Alignment:
Q  678 tttgtctctttttacaagatc-ctttgatattttcaagtacattaattaa-ttatttatcaatattctcctatttattttatat 759  Q
    |||||||||||||| |||||| |||||||||||  |||||||||| |||| || |||| |||||  | ||||||||||||||||    
T  20113408 tttgtctctttttataagatctctttgatatttcaaagtacattacttaatttttttaccaatacacccctatttattttatat 20113325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 678 - 755
Target Start/End: Complemental strand, 12918832 - 12918754
Alignment:
Q  678 tttgtctctttttacaagatccttt-gatattttcaagtacattaattaattatttatcaatattctcctatttatttt 755  Q
    |||||| ||||||| |||||||||| | ||||||||||||||||||||| || |||| ||| || | | ||||||||||    
T  12918832 tttgtccctttttataagatccttttggtattttcaagtacattaattatttctttaccaacatacccttatttatttt 12918754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 678 - 763
Target Start/End: Original strand, 35938408 - 35938490
Alignment:
Q  678 tttgtctctttttacaagatccttt-gatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 763  Q
    |||||||||||||| ||||| |||| ||||||||||| |||||||    |||||||| ||| |  | ||||||||||||||||||||    
T  35938408 tttgtctctttttataagattcttttgatattttcaaatacatta----attatttaccaacacacccctatttattttatatcttt 35938490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 8e-17; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 678 - 763
Target Start/End: Original strand, 26699360 - 26699445
Alignment:
Q  678 tttgtctctttttacaagatcctttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 763  Q
    |||||||||||||| || |  |||||||||||  ||||| ||||||||||||||||||||||| | |||||||||||| |||||||    
T  26699360 tttgtctctttttataaaactctttgatatttcgaagtatattaattaattatttatcaatatacccctatttattttctatcttt 26699445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 678 - 763
Target Start/End: Original strand, 26969093 - 26969178
Alignment:
Q  678 tttgtctctttttacaagatcctttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 763  Q
    |||||||||||||| || |  |||||||||||  ||||| ||||||||||||||||||||||| | |||||||||||| |||||||    
T  26969093 tttgtctctttttataaaactctttgatatttcgaagtatattaattaattatttatcaatatacccctatttattttctatcttt 26969178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 678 - 759
Target Start/End: Original strand, 30117156 - 30117238
Alignment:
Q  678 tttgtctctttttacaaga-tcctttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatat 759  Q
    |||||||||||||| |||| |||||||||||||  ||||||||||||||||| |||| ||| |  |  |||||||||||||||    
T  30117156 tttgtctctttttataagactcctttgatatttgtaagtacattaattaattctttaccaacaaacctctatttattttatat 30117238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 679 - 760
Target Start/End: Original strand, 37700137 - 37700219
Alignment:
Q  679 ttgtctctttttacaaga-tcctttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatc 760  Q
    |||| |||||||| |||| ||||||||||||| | |||||||||||||||| |||| ||| ||   |||||||||||||||||    
T  37700137 ttgtttctttttataagactcctttgatatttccgagtacattaattaattctttaccaacatatccctatttattttatatc 37700219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 678 - 725
Target Start/End: Original strand, 39971057 - 39971105
Alignment:
Q  678 tttgtctctttttacaagatcc-tttgatattttcaagtacattaatta 725  Q
    |||||| ||||||| ||||||| ||||||||||||||||||||||||||    
T  39971057 tttgtccctttttataagatccctttgatattttcaagtacattaatta 39971105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 678 - 763
Target Start/End: Original strand, 5966616 - 5966702
Alignment:
Q  678 tttgtctctttttacaagatcc-tttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 763  Q
    |||||||||||||| ||||| | |||||||||||||||||| |||||||| |  |||||||||| | | ||||||||||||||||||    
T  5966616 tttgtctctttttataagattcatttgatattttcaagtacgttaattaactcattatcaatatacccttatttattttatatcttt 5966702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 678 - 756
Target Start/End: Original strand, 50074453 - 50074532
Alignment:
Q  678 tttgtctctttttacaaga-tcctttgatattttcaagtacattaattaattatttatcaatattctcctatttatttta 756  Q
    |||||||||||||| |||| | ||||| ||||| |||||||||||||||||| |||| ||| || |||||||||||||||    
T  50074453 tttgtctctttttataagacttctttggtatttccaagtacattaattaattctttaccaacatactcctatttatttta 50074532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 678 - 763
Target Start/End: Original strand, 26768428 - 26768514
Alignment:
Q  678 tttgtctctttttacaagatcc-tttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 763  Q
    |||||||||||||| ||||||| |||  |||||  ||||||||||||||||| |||| ||| || | ||||||||||||||||||||    
T  26768428 tttgtctctttttataagatcccttttgtatttctaagtacattaattaattctttaccaacatacccctatttattttatatcttt 26768514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 699 - 763
Target Start/End: Complemental strand, 15624868 - 15624804
Alignment:
Q  699 ctttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 763  Q
    ||||| |||||||||||||||||||||||| |||| ||| || |  |||||||||||||||||||    
T  15624868 ctttggtattttcaagtacattaattaattctttaccaacatacctctatttattttatatcttt 15624804  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 678 - 755
Target Start/End: Original strand, 4389652 - 4389730
Alignment:
Q  678 tttgtctctttttacaagatc-ctttgatattttcaagtacattaattaattatttatcaatattctcctatttatttt 755  Q
    |||||||||||||| |||||| ||||||||||| ||||||||||||||| || |||| |||  | ||| ||||||||||    
T  4389652 tttgtctctttttataagatctctttgatatttccaagtacattaattatttctttaccaacctactcttatttatttt 4389730  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 681 - 733
Target Start/End: Original strand, 35693108 - 35693161
Alignment:
Q  681 gtctctttttacaagatcc-tttgatattttcaagtacattaattaattattta 733  Q
    ||||||||||| ||||||| ||||||||||||||| ||||||||||||| ||||    
T  35693108 gtctctttttataagatccctttgatattttcaagcacattaattaatttttta 35693161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 699 - 733
Target Start/End: Complemental strand, 4371736 - 4371702
Alignment:
Q  699 ctttgatattttcaagtacattaattaattattta 733  Q
    ||||||||||||||||||||||||||| |||||||    
T  4371736 ctttgatattttcaagtacattaattatttattta 4371702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 678 - 763
Target Start/End: Original strand, 46083910 - 46083995
Alignment:
Q  678 tttgtctctttttacaaga-tcctttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 763  Q
    |||||||||||||| |||  || ||||||||||||||  ||||||||||| | |||| |||||| | || |||||||||||||||||    
T  46083910 tttgtctctttttataagcctcatttgatattttcaaacacattaattaactttttaccaatatac-cccatttattttatatcttt 46083995  T

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Target: scaffold0280 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 698 - 763
Target Start/End: Complemental strand, 335 - 270
Alignment:
Q  698 cctttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 763  Q
    |||| |||||||||| |||||||||||||||||||| ||| || ||| ||||||||||||||||||    
T  335 ccttagatattttcatgtacattaattaattatttaccaacatactcatatttattttatatcttt 270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 679 - 763
Target Start/End: Complemental strand, 4897736 - 4897651
Alignment:
Q  679 ttgtctctttttacaagatc-ctttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 763  Q
    ||||||||||||| |||| | |||||||||||  ||||||||||||||||| |||| ||| || | ||||||||||||||||||||    
T  4897736 ttgtctctttttataagacctctttgatatttcgaagtacattaattaattctttaccaacatacccctatttattttatatcttt 4897651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 679 - 763
Target Start/End: Complemental strand, 4945130 - 4945045
Alignment:
Q  679 ttgtctctttttacaagatc-ctttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 763  Q
    ||||||||||||| |||| | |||||||||||  ||||||||||||||||| |||| ||| || | ||||||||||||||||||||    
T  4945130 ttgtctctttttataagacctctttgatatttcgaagtacattaattaattctttaccaacatacccctatttattttatatcttt 4945045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 679 - 763
Target Start/End: Complemental strand, 12296422 - 12296337
Alignment:
Q  679 ttgtctctttttacaagatc-ctttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 763  Q
    ||||||||||||| ||||   ||||||||||| |||||||||||||||||| |||| ||| || | ||||||||||||||||||||    
T  12296422 ttgtctctttttataagacatctttgatatttccaagtacattaattaattctttaccaacatacccctatttattttatatcttt 12296337  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 678 - 759
Target Start/End: Original strand, 12969554 - 12969636
Alignment:
Q  678 tttgtctctttttacaagatcc-tttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatat 759  Q
    |||||||||||||| |||| || |||| ||||||||| || ||||||||||| |||| ||| || | ||||||||||||||||    
T  12969554 tttgtctctttttataagacccctttgttattttcaaatatattaattaattctttaccaacatacccctatttattttatat 12969636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 699 - 763
Target Start/End: Complemental strand, 27725665 - 27725601
Alignment:
Q  699 ctttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 763  Q
    |||||||||||| |||||||||||||| || ||||||||| | | | ||||||||||| ||||||    
T  27725665 ctttgatatttttaagtacattaattatttctttatcaatctacccttatttattttacatcttt 27725601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 700 - 755
Target Start/End: Complemental strand, 21522984 - 21522929
Alignment:
Q  700 tttgatattttcaagtacattaattaattatttatcaatattctcctatttatttt 755  Q
    |||||||||||||| ||||||||||| ||||||||||| || | | ||||||||||    
T  21522984 tttgatattttcaattacattaattatttatttatcaacatacccttatttatttt 21522929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 698 - 733
Target Start/End: Complemental strand, 26273529 - 26273494
Alignment:
Q  698 cctttgatattttcaagtacattaattaattattta 733  Q
    ||||||||||||||||||||||||||||||| ||||    
T  26273529 cctttgatattttcaagtacattaattaattcttta 26273494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 705 - 758
Target Start/End: Complemental strand, 14493779 - 14493726
Alignment:
Q  705 tattttcaagtacattaattaattatttatcaatattctcctatttattttata 758  Q
    ||||||||| |||||||||||||| |||| ||| || | |||||||||||||||    
T  14493779 tattttcaaatacattaattaattctttaccaacatacccctatttattttata 14493726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 700 - 763
Target Start/End: Original strand, 28017009 - 28017072
Alignment:
Q  700 tttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 763  Q
    |||| |||||||||||||||||||||||| || |||||||  | ||||||||||||||||||||    
T  28017009 tttggtattttcaagtacattaattaattcttgatcaatacacccctatttattttatatcttt 28017072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 678 - 763
Target Start/End: Original strand, 18312232 - 18312318
Alignment:
Q  678 tttgtctctttttacaagatccttt-gatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 763  Q
    ||||| |||||||| ||||| |||| ||||||||||| |||||||||||||| |||| ||| ||  | |||||||||||||||||||    
T  18312232 tttgtttctttttataagatacttttgatattttcaaatacattaattaattttttaccaacatatttctatttattttatatcttt 18312318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 679 - 728
Target Start/End: Complemental strand, 20307530 - 20307481
Alignment:
Q  679 ttgtctctttttacaagatcctttgatattttcaagtacattaattaatt 728  Q
    ||||||||||||| |||||||| |||||||||||| ||||||||||||||    
T  20307530 ttgtctctttttataagatcctgtgatattttcaaatacattaattaatt 20307481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 678 - 755
Target Start/End: Original strand, 30534748 - 30534826
Alignment:
Q  678 tttgtctctttttacaaga-tcctttgatattttcaagtacattaattaattatttatcaatattctcctatttatttt 755  Q
    |||||| ||||||| |||| ||||||||||||||||||||||||||||| || |||| ||| || | | ||||||||||    
T  30534748 tttgtccctttttataagactcctttgatattttcaagtacattaattatttctttaccaacatacccttatttatttt 30534826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 678 - 755
Target Start/End: Complemental strand, 32964389 - 32964311
Alignment:
Q  678 tttgtctctttttacaaga-tcctttgatattttcaagtacattaattaattatttatcaatattctcctatttatttt 755  Q
    |||||| ||||||| |||| ||||||| ||||||||||||||||||||| || |||| ||| || | | ||||||||||    
T  32964389 tttgtccctttttataagagtcctttggtattttcaagtacattaattatttctttaccaacatacccttatttatttt 32964311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 678 - 732
Target Start/End: Complemental strand, 47534897 - 47534843
Alignment:
Q  678 tttgtctctttttacaagatcctttgatattttcaagtacattaattaattattt 732  Q
    |||||| ||||||| || | |||||| ||||||||| ||||||||||||||||||    
T  47534897 tttgtccctttttataaaaccctttgctattttcaactacattaattaattattt 47534843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 679 - 759
Target Start/End: Complemental strand, 2087282 - 2087201
Alignment:
Q  679 ttgtctctttttacaagatc-ctttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatat 759  Q
    ||||||||||||||||||   ||||  |||||||||||||||||||||||| |||| ||| |  | | ||||||||||||||    
T  2087282 ttgtctctttttacaagacatctttagtattttcaagtacattaattaattttttaccaacacacccttatttattttatat 2087201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 678 - 759
Target Start/End: Complemental strand, 30734770 - 30734688
Alignment:
Q  678 tttgtctctttttacaaga-tcctttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatat 759  Q
    |||||| ||||||| |||| || ||||||||||||||||||| ||||||| | ||||||||||  | ||||||||||||||||    
T  30734770 tttgtcactttttataagactcatttgatattttcaagtacagtaattaactctttatcaatacacccctatttattttatat 30734688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 684 - 763
Target Start/End: Complemental strand, 24260942 - 24260862
Alignment:
Q  684 tctttttacaagatcc-tttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 763  Q
    |||||||| ||||||| |||||||||| ||||| |||||||||||| |||| ||| || | | ||||||||||||||||||    
T  24260942 tctttttataagatccctttgatatttccaagtgcattaattaattttttaccaacatacccttatttattttatatcttt 24260862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 698 - 763
Target Start/End: Original strand, 30512831 - 30512897
Alignment:
Q  698 cctttgatattttcaagtacattaattaa-ttatttatcaatattctcctatttattttatatcttt 763  Q
    |||||| |||||||||||||||||||||| || |||| ||| || | ||||||||||||||||||||    
T  30512831 cctttggtattttcaagtacattaattaatttttttaccaacatacccctatttattttatatcttt 30512897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 698 - 733
Target Start/End: Complemental strand, 19701202 - 19701167
Alignment:
Q  698 cctttgatattttcaagtacattaattaattattta 733  Q
    ||||||||||||||||||||||||||||||| ||||    
T  19701202 cctttgatattttcaagtacattaattaattcttta 19701167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 699 - 754
Target Start/End: Original strand, 55993 - 56048
Alignment:
Q  699 ctttgatattttcaagtacattaattaattatttatcaatattctcctatttattt 754  Q
    ||||| |||||||||||||||| ||||||| |||||||| || |||||||||||||    
T  55993 ctttggtattttcaagtacatttattaattctttatcaacatactcctatttattt 56048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 700 - 763
Target Start/End: Complemental strand, 8646176 - 8646113
Alignment:
Q  700 tttgatattttcaagtacattaattaattatttatcaatattctcctatttattttatatcttt 763  Q
    |||| ||||| |||||||||||||||||| |||| ||  || | ||||||||||||||||||||    
T  8646176 tttgctatttccaagtacattaattaattttttaccaccatacccctatttattttatatcttt 8646113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 678 - 755
Target Start/End: Complemental strand, 6418646 - 6418568
Alignment:
Q  678 tttgtctctttttacaagatc-ctttgatattttcaagtacattaattaattatttatcaatattctcctatttatttt 755  Q
    |||||| ||||||| |||| | ||||||||||||||||||||||||||| || |||| ||| || | | ||||||||||    
T  6418646 tttgtccctttttataagacctctttgatattttcaagtacattaattatttctttaccaacatacccttatttatttt 6418568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 705 - 755
Target Start/End: Original strand, 47226 - 47276
Alignment:
Q  705 tattttcaagtacattaattaattatttatcaatattctcctatttatttt 755  Q
    |||||||||||||||| ||||||| |||| ||| || ||||||||||||||    
T  47226 tattttcaagtacatttattaattctttaccaacatactcctatttatttt 47276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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