View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21231_low_12 (Length: 330)

Name: NF21231_low_12
Description: NF21231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21231_low_12
NF21231_low_12
[»] chr8 (1 HSPs)
chr8 (16-311)||(32689082-32689377)


Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 16 - 311
Target Start/End: Complemental strand, 32689377 - 32689082
Alignment:
Q  16 atcatagttgtttgttggaactgggaaaattcctaagcgaagtagtttatagcaagtgatgtttgttattatgtttttggggttaggcattgtatttagt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32689377 atcatagttgtttgttggaactgggaaaattcctaagcgaagtagtttatagcaagtgatgtttgttattatgtttttggggttaggcattgtatttagt 32689278  T
Q  116 tgaacaagttatgagggacctagggaagtcacagaaaccatatgaatttatcacacagatagaggtgcctggttttcagttgaatattttaaggacatca 215  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32689277 tgaacaagttatgagggacctagggacgtcacagaaaccatatgaatttatcacacagatagaggtgcctggttttcagttgaatattttaaggacatca 32689178  T
Q  216 agtggtaattgttttcttggtgacaactgctcgagcaccaaatccaattagtttgatattctaaccaaagattgtttatacagacagtgatgtctc 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32689177 agtggtaattgttttcttggtgacaactgctcgagcaccaaatccaattagtttgatattctaaccaaagattgtttatacagacagtgatgtctc 32689082  T

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