View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21231_low_4 (Length: 512)
Name: NF21231_low_4
Description: NF21231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21231_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 11 - 496
Target Start/End: Complemental strand, 194335 - 193856
Alignment:
| Q |
11 |
cagagacccatagaatgaaaggattattaatcaaacatgagacaggtggattttgttgggagattatggtagggaggacttgtttcccaaccctctctag |
110 |
Q |
| |
|
|||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
194335 |
cagaaacccatggaatgaaaggattgttaatcaaacatgagacaggtggattttgttgggagattatggtagggaggacttgtttcccaaccatctctag |
194236 |
T |
|
| Q |
111 |
ctgtggcaaatacacatccaagtcaagccgttttggttcattctcatcccaaccatcttcaaaccattcaaatctaataaatccttttcctatcacaact |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
194235 |
ttgtggcaaatacacatccaagtcaagccgttttggttcatcctcatcccaaccatcttcaaaccattcaaatctaataaatccttttcctatcacaact |
194136 |
T |
|
| Q |
211 |
tccttctcttcttctaaatctctagcttttctcatctctttgccccagcttttctggtgtgcaaaaagtcactgccaaaccttttgaggccaacagcttc |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
194135 |
tccttctcttcttctaaatctctagcttttctcatctctttgccccagc-tttctagtgtgcaaaaagtcactgccaaaccttttgaggccaacagcttc |
194037 |
T |
|
| Q |
311 |
cccagcctcaatagagggttcacgtgtccttgcgccgggaacgatacaacatacaaggaacacatgctctacaatatcattatcacaccccatttttcct |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
194036 |
cccagcctcaatagagggttcacgtgtccttgcgccgggaacg-------atacaaggaacacatgctctacaatatcattatcacaccccattttccct |
193944 |
T |
|
| Q |
411 |
ttaatctcattcatctctcgtaatttgttaattaatttccgtgaatgatcagatg--atatatataataatctgagtggcatgtatgt |
496 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
193943 |
ttaatctcattcatctctcttaatttgttaattaatttccttgaatgatcagatgatatatatataataatctgagtggcatgtatgt |
193856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University