View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21231_low_5 (Length: 505)
Name: NF21231_low_5
Description: NF21231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21231_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 19 - 473
Target Start/End: Original strand, 54844269 - 54844723
Alignment:
| Q |
19 |
atttgttcaaattctgctacacttcctagttaattttactaaatagggtatggcggaacaagaacaatttattaaattctattacattatagtgagtcac |
118 |
Q |
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| T |
54844269 |
atttgttcaaattctgctacacttcctggttaattttactaaatagggtatggcggaacaagaacaatttattaaattctattacattatagtgagtcac |
54844368 |
T |
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| Q |
119 |
taacaattagacaataaataaggaagcttaccgcgttgatgatcaagaggtctgagaatttcagcaacaatttgaccaacactttgaaaagacttcaaat |
218 |
Q |
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| T |
54844369 |
taacaattagacaataaataaggaagcttaccgcgttgatgatcaagaggtctgagaatttcagcaacaatttgaccaacactttgaaaagacttcaaat |
54844468 |
T |
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| Q |
219 |
tatcctctgatttgttaaattccttaattgatttacgcaaatcgagtttaactgagaagagaaagaggtattagctagcagagttgataataaggaaaaa |
318 |
Q |
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| T |
54844469 |
catcctctgatttgttaaattccttaattgatttacgcaaatcgagtttaactgagaagagaaagagttattagctagcagagttgataataaggaaaaa |
54844568 |
T |
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| Q |
319 |
agaatagggtttggtggtgggaatgaacctgaattgcgtctggattcaagctccttcttattgaggagttttttgcgataatcattaaccactttacgac |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54844569 |
agaatagggtttggtggtgggaatgaacctgaattgcgtctggattcaagctccttcttattgaggagttttttgcgataatcattaaccactttacgac |
54844668 |
T |
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| Q |
419 |
gttgaacgccatcatcactctcgcttaacgaagacgacatcgttcaactcaactc |
473 |
Q |
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| T |
54844669 |
gttgaacgccatcatcactctcgcttaacgaagacgacatcgttcaactcaactc |
54844723 |
T |
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