View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21232_high_4 (Length: 235)

Name: NF21232_high_4
Description: NF21232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21232_high_4
NF21232_high_4
[»] chr4 (9 HSPs)
chr4 (16-184)||(24908229-24908397)
chr4 (47-173)||(43179511-43179638)
chr4 (113-173)||(42468624-42468684)
chr4 (113-173)||(42470953-42471013)
chr4 (118-173)||(8739337-8739392)
chr4 (113-173)||(50855946-50856006)
chr4 (115-173)||(19429262-19429320)
chr4 (115-173)||(45162120-45162178)
chr4 (115-173)||(45167012-45167070)
[»] chr3 (3 HSPs)
chr3 (16-184)||(8535420-8535589)
chr3 (53-173)||(1701058-1701178)
chr3 (76-174)||(18966295-18966393)
[»] chr5 (8 HSPs)
chr5 (28-171)||(15468940-15469081)
chr5 (88-156)||(1779419-1779487)
chr5 (113-173)||(22600851-22600911)
chr5 (113-173)||(23164425-23164485)
chr5 (113-170)||(11852353-11852410)
chr5 (113-173)||(37207811-37207871)
chr5 (87-160)||(1779649-1779722)
chr5 (117-173)||(11850092-11850148)
[»] chr2 (4 HSPs)
chr2 (59-173)||(34576785-34576899)
chr2 (129-173)||(29801935-29801979)
chr2 (113-173)||(31486822-31486882)
chr2 (118-156)||(8995249-8995287)
[»] chr8 (7 HSPs)
chr8 (30-158)||(12895360-12895488)
chr8 (113-173)||(4876931-4876991)
chr8 (113-173)||(4879259-4879319)
chr8 (113-173)||(36379652-36379712)
chr8 (115-173)||(21268315-21268373)
chr8 (113-173)||(24519339-24519399)
chr8 (113-173)||(36377367-36377427)
[»] chr1 (5 HSPs)
chr1 (88-156)||(8933751-8933819)
chr1 (83-162)||(18353719-18353798)
chr1 (113-173)||(2404012-2404072)
chr1 (113-173)||(734763-734823)
chr1 (113-173)||(29833260-29833320)
[»] chr7 (8 HSPs)
chr7 (113-173)||(3932654-3932714)
chr7 (113-173)||(3934893-3934953)
chr7 (113-173)||(8733682-8733742)
chr7 (113-173)||(19786702-19786762)
chr7 (113-173)||(19789008-19789068)
chr7 (88-156)||(42678772-42678840)
chr7 (96-173)||(3052126-3052203)
chr7 (115-173)||(36464408-36464466)
[»] scaffold0050 (1 HSPs)
scaffold0050 (118-175)||(29284-29341)
[»] chr6 (1 HSPs)
chr6 (88-158)||(21199211-21199281)


Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 16 - 184
Target Start/End: Complemental strand, 24908397 - 24908229
Alignment:
Q  16 aatatggaggtttctagatatagagaatattaaagaatattatggaagcttctagacgcactactaaataagataaaataaagcattaggaaaatagtaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  24908397 aatatggaggtttctagatatagagaatattaaagaatattatggaagcttctagacgcactactaaataagataaattaaagcattaggaaaatagtaa 24908298  T
Q  116 cttttctaggtctttctagtcatatgaactagagtatccatatctttagacttttcttgtaataaatgc 184  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  24908297 cttttctaggtctttttagtcatatgaactaaagtatccatatctttagacttttcttgtaataaatgc 24908229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 47 - 173
Target Start/End: Original strand, 43179511 - 43179638
Alignment:
Q  47 aaagaatattatggaagcttctagacgcactactaaataagataaaa-taaagcattaggaaaatagtaacttttctaggtctttctagtcatatgaact 145  Q
    |||||||| || ||||||| |||||| | ||||||||||| |||||| | ||||||||   ||||  |||||||| | | || |||||||||||||||||    
T  43179511 aaagaataataaggaagctactagacactctactaaataaaataaaaattaagcattaaagaaatcttaacttttttggatccttctagtcatatgaact 43179610  T
Q  146 agagtatccatatctttagacttttctt 173  Q
    ||||||||||| ||| || |||||||||    
T  43179611 agagtatccatgtctctatacttttctt 43179638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 113 - 173
Target Start/End: Complemental strand, 42468684 - 42468624
Alignment:
Q  113 taacttttctaggtctttctagtcatatgaactagagtatccatatctttagacttttctt 173  Q
    |||||||||||| || |||||| | |||| |||||||||||||||||| ||||||||||||    
T  42468684 taacttttctagatccttctaggcttatgtactagagtatccatatctctagacttttctt 42468624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 113 - 173
Target Start/End: Complemental strand, 42471013 - 42470953
Alignment:
Q  113 taacttttctaggtctttctagtcatatgaactagagtatccatatctttagacttttctt 173  Q
    |||||||||||| || |||||| | |||| |||||||||||||||||| ||||||||||||    
T  42471013 taacttttctagatccttctaggcttatgtactagagtatccatatctctagacttttctt 42470953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 173
Target Start/End: Original strand, 8739337 - 8739392
Alignment:
Q  118 tttctaggtctttctagtcatatgaactagagtatccatatctttagacttttctt 173  Q
    ||||||| || ||||||||||||||||||||| |||||||||| |||| |||||||    
T  8739337 tttctagatccttctagtcatatgaactagagcatccatatctctagatttttctt 8739392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 173
Target Start/End: Complemental strand, 50856006 - 50855946
Alignment:
Q  113 taacttttctaggtctttctagtcatatgaactagagtatccatatctttagacttttctt 173  Q
    |||||||||||| || |||||| | |||| || ||||||||||||||| ||||||||||||    
T  50856006 taacttttctagatccttctaggcttatgtaccagagtatccatatctctagacttttctt 50855946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 173
Target Start/End: Complemental strand, 19429320 - 19429262
Alignment:
Q  115 acttttctaggtctttctagtcatatgaactagagtatccatatctttagacttttctt 173  Q
    |||||||||| || |||||||  |||| |||||||||| ||||||| ||||||||||||    
T  19429320 acttttctagatccttctagttttatgtactagagtattcatatctctagacttttctt 19429262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 173
Target Start/End: Original strand, 45162120 - 45162178
Alignment:
Q  115 acttttctaggtctttctagtcatatgaactagagtatccatatctttagacttttctt 173  Q
    |||||||||| || ||||||   |||| |||||||||||||||||| ||||||||||||    
T  45162120 acttttctagatccttctaggtttatgtactagagtatccatatctctagacttttctt 45162178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 173
Target Start/End: Original strand, 45167012 - 45167070
Alignment:
Q  115 acttttctaggtctttctagtcatatgaactagagtatccatatctttagacttttctt 173  Q
    |||||||||| || ||||||   |||| |||||||||||||||||| ||||||||||||    
T  45167012 acttttctagatccttctaggtttatgtactagagtatccatatctctagacttttctt 45167070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 7e-39; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 16 - 184
Target Start/End: Original strand, 8535420 - 8535589
Alignment:
Q  16 aatatggaggtttctagatatagagaatattaaagaatattatggaagcttctagacgcactactaaataagataaaataaagcattaggaaaatagta- 114  Q
    |||||||| |||| |||||||| |||||| |||||||| |||| ||||||||||||| | ||||||||||||||||||||||||| ||| |||||  ||     
T  8535420 aatatggaagtttttagatatatagaatactaaagaattttattgaagcttctagacactctactaaataagataaaataaagcactagaaaaatcttat 8535519  T
Q  115 acttttctaggtctttctagtcatatgaactagagtatccatatctttagacttttcttgtaataaatgc 184  Q
      |||| ||| || |||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||    
T  8535520 ttttttttagatccttctagtcatataaactaaagtatccatatctctagacttttcttgtaataaatgc 8535589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 53 - 173
Target Start/End: Original strand, 1701058 - 1701178
Alignment:
Q  53 tattatggaagcttctagacgcactactaaataagataaaataaagcattaggaaaatagtaacttttctaggtctttctagtcatatgaactagagtat 152  Q
    ||||| |||||||||||||| |  |||||||||||||||||| || || |||| ||||  |||||||||||| || ||||||||||||||| |||| |||    
T  1701058 tattaaggaagcttctagacactgtactaaataagataaaattaaacactagggaaatcttaacttttctagatccttctagtcatatgaattagattat 1701157  T
Q  153 ccatatctttagacttttctt 173  Q
    |||||| | ||| ||||||||    
T  1701158 ccatatttctaggcttttctt 1701178  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 174
Target Start/End: Complemental strand, 18966393 - 18966295
Alignment:
Q  76 ctactaaataagataaaataaagcattaggaaaatagtaacttttctaggtctttctagtcatatgaactagagtatccatatctttagacttttcttg 174  Q
    ||||||||| | ||||||| ||||| |||||||||  |||  ||||||| || ||||||||||| | |||||||||||||||||| | |||||||||||    
T  18966393 ctactaaatgaaataaaattaagcactaggaaaatcttaatgtttctagatccttctagtcatacgtactagagtatccatatctcttgacttttcttg 18966295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 28 - 171
Target Start/End: Original strand, 15468940 - 15469081
Alignment:
Q  28 tctagatatagagaatattaaagaatattatggaagcttctagacgcactactaaataagataaaataaagcattaggaaaatagtaacttttctaggtc 127  Q
    |||||| |||||||||| ||||||| |||| |||||||| |||||  |||||||||||||||||||||||||| |||||||||| |||||||||||| ||    
T  15468940 tctagacatagagaatactaaagaacattaaggaagcttatagac--actactaaataagataaaataaagcactaggaaaatattaacttttctagatc 15469037  T
Q  128 tttctagtcatatgaactagagtatccatatctttagacttttc 171  Q
      |||||||||||||| ||| ||||| |||||| || |||||||    
T  15469038 catctagtcatatgaattagtgtatctatatctctaaacttttc 15469081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 156
Target Start/End: Complemental strand, 1779487 - 1779419
Alignment:
Q  88 ataaaataaagcattaggaaaatagtaacttttctaggtctttctagtcatatgaactagagtatccat 156  Q
    ||||||||||||| ||| |||||  |||  ||||||| || ||||||||||||||||||||||||||||    
T  1779487 ataaaataaagcactagaaaaatcttaatgtttctagatccttctagtcatatgaactagagtatccat 1779419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 113 - 173
Target Start/End: Original strand, 22600851 - 22600911
Alignment:
Q  113 taacttttctaggtctttctagtcatatgaactagagtatccatatctttagacttttctt 173  Q
    |||||||||||| || |||||| | |||| |||||||||||||||||| ||||||||||||    
T  22600851 taacttttctagatccttctaggcttatgtactagagtatccatatctctagacttttctt 22600911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 113 - 173
Target Start/End: Complemental strand, 23164485 - 23164425
Alignment:
Q  113 taacttttctaggtctttctagtcatatgaactagagtatccatatctttagacttttctt 173  Q
    |||||||||||| || |||||| | |||| |||||||||||||||||| ||||||||||||    
T  23164485 taacttttctagatccttctaggcttatgtactagagtatccatatctctagacttttctt 23164425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 170
Target Start/End: Complemental strand, 11852410 - 11852353
Alignment:
Q  113 taacttttctaggtctttctagtcatatgaactagagtatccatatctttagactttt 170  Q
    ||||||||||||| | |||||| | |||| |||||||||||||||||| |||||||||    
T  11852410 taacttttctaggaccttctaggcttatgtactagagtatccatatctctagactttt 11852353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 173
Target Start/End: Original strand, 37207811 - 37207871
Alignment:
Q  113 taacttttctaggtctttctagtcatatgaactagagtatccatatctttagacttttctt 173  Q
    |||||||||||| || |||||| | |||| |||||||||||||| ||| ||||||||||||    
T  37207811 taacttttctagatccttctaggcttatgtactagagtatccatgtctctagacttttctt 37207871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 160
Target Start/End: Complemental strand, 1779722 - 1779649
Alignment:
Q  87 gataaaataaagcattaggaaaatagtaacttttctaggtctttctagtcatatgaactagagtatccatatct 160  Q
    |||||||||||||  |||| ||||  |||  ||||||| || |||||||||||||||||||| ||||| |||||    
T  1779722 gataaaataaagcgctagggaaatcttaatgtttctagatccttctagtcatatgaactagaatatccctatct 1779649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 173
Target Start/End: Complemental strand, 11850148 - 11850092
Alignment:
Q  117 ttttctaggtctttctagtcatatgaactagagtatccatatctttagacttttctt 173  Q
    |||||||| || |||||| | |||| || ||||||||||||||| ||||||||||||    
T  11850148 ttttctagatccttctaggcttatgtacaagagtatccatatctctagacttttctt 11850092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 59 - 173
Target Start/End: Complemental strand, 34576899 - 34576785
Alignment:
Q  59 ggaagcttctagacgcactactaaataagataaaataaagcattaggaaaatagtaacttttctaggtctttctagtcatatgaactagagtatccatat 158  Q
    ||||||| || ||| | ||||||||||| ||||||| | ||| |||  ||||  |||||||||||| || |||||||||||||||||||||||| ||| |    
T  34576899 ggaagctactggacactctactaaataaaataaaattacgcactagagaaatcttaacttttctagatccttctagtcatatgaactagagtattcatgt 34576800  T
Q  159 ctttagacttttctt 173  Q
    || ||||||||||||    
T  34576799 ctctagacttttctt 34576785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 29801935 - 29801979
Alignment:
Q  129 ttctagtcatatgaactagagtatccatatctttagacttttctt 173  Q
    |||||||||||||||||| || |||||||||| ||||||||||||    
T  29801935 ttctagtcatatgaactatagcatccatatctctagacttttctt 29801979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 173
Target Start/End: Original strand, 31486822 - 31486882
Alignment:
Q  113 taacttttctaggtctttctagtcatatgaactagagtatccatatctttagacttttctt 173  Q
    |||||||||||| || |||||| | |||| |||||||||||||||||| | ||||||||||    
T  31486822 taacttttctagatccttctaggcttatgtactagagtatccatatctctggacttttctt 31486882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 156
Target Start/End: Complemental strand, 8995287 - 8995249
Alignment:
Q  118 tttctaggtctttctagtcatatgaactagagtatccat 156  Q
    ||||||| || ||||||||||||||||||||||||||||    
T  8995287 tttctagatccttctagtcatatgaactagagtatccat 8995249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 30 - 158
Target Start/End: Original strand, 12895360 - 12895488
Alignment:
Q  30 tagatatagagaatattaaagaatattatggaagcttctagacgcactactaaataagataaaataaagcattaggaaaatagtaacttttctaggtctt 129  Q
    |||||||||||||||  ||||||||||| | || ||||||||| | |||||||||||| |||||| |||||||||  ||||   ||||||||||| ||||    
T  12895360 tagatatagagaatacgaaagaatattaagaaaacttctagacactctactaaataagttaaaattaagcattagagaaatctaaacttttctagatctt 12895459  T
Q  130 tctagtcatatgaactagagtatccatat 158  Q
    | |   ||| ||||||| |||||||||||    
T  12895460 tttgaacatttgaactaaagtatccatat 12895488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 173
Target Start/End: Original strand, 4876931 - 4876991
Alignment:
Q  113 taacttttctaggtctttctagtcatatgaactagagtatccatatctttagacttttctt 173  Q
    |||||||||||| || |||||| | |||| |||| ||||||||||||| ||||||||||||    
T  4876931 taacttttctagatccttctaggcttatgtactatagtatccatatctctagacttttctt 4876991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 173
Target Start/End: Original strand, 4879259 - 4879319
Alignment:
Q  113 taacttttctaggtctttctagtcatatgaactagagtatccatatctttagacttttctt 173  Q
    |||||||||||| || |||||| | |||| |||| ||||||||||||| ||||||||||||    
T  4879259 taacttttctagatccttctaggcttatgtactatagtatccatatctctagacttttctt 4879319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 173
Target Start/End: Complemental strand, 36379712 - 36379652
Alignment:
Q  113 taacttttctaggtctttctagtcatatgaactagagtatccatatctttagacttttctt 173  Q
    |||||||||||| || |||||| | |||| |||||||||||||||||| | ||||||||||    
T  36379712 taacttttctagatccttctaggcttatgtactagagtatccatatctctggacttttctt 36379652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 173
Target Start/End: Complemental strand, 21268373 - 21268315
Alignment:
Q  115 acttttctaggtctttctagtcatatgaactagagtatccatatctttagacttttctt 173  Q
    |||||||||| || |||||||  |||| |||| ||||||||||||| ||||||||||||    
T  21268373 acttttctagatccttctagttttatgtactaaagtatccatatctctagacttttctt 21268315  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 173
Target Start/End: Complemental strand, 24519399 - 24519339
Alignment:
Q  113 taacttttctaggtctttctagtcatatgaactagagtatccatatctttagacttttctt 173  Q
    |||||||||||| || |||||| | |||| || | ||||||||||||| ||||||||||||    
T  24519399 taacttttctagatccttctaggcttatgtacaaaagtatccatatctctagacttttctt 24519339  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 173
Target Start/End: Complemental strand, 36377427 - 36377367
Alignment:
Q  113 taacttttctaggtctttctagtcatatgaactagagtatccatatctttagacttttctt 173  Q
    |||||||||||| || |||||| | |||| |||||||||||||||||| |  |||||||||    
T  36377427 taacttttctagatccttctaggcttatgtactagagtatccatatctctgaacttttctt 36377367  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 156
Target Start/End: Complemental strand, 8933819 - 8933751
Alignment:
Q  88 ataaaataaagcattaggaaaatagtaacttttctaggtctttctagtcatatgaactagagtatccat 156  Q
    ||||||||||||| |||||||||  |||  ||||||| || ||||||||||||||||||||||||||||    
T  8933819 ataaaataaagcactaggaaaatcttaatgtttctagatccttctagtcatatgaactagagtatccat 8933751  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 83 - 162
Target Start/End: Original strand, 18353719 - 18353798
Alignment:
Q  83 ataagataaaataaagcattaggaaaatagtaacttttctaggtctttctagtcatatgaactagagtatccatatcttt 162  Q
    |||| |||||||  |||| |||||||||  || ||||||||| || |||||||||||||||||||||||||||| |||||    
T  18353719 ataaaataaaattgagcactaggaaaatcttatcttttctagatccttctagtcatatgaactagagtatccatgtcttt 18353798  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 113 - 173
Target Start/End: Complemental strand, 2404072 - 2404012
Alignment:
Q  113 taacttttctaggtctttctagtcatatgaactagagtatccatatctttagacttttctt 173  Q
    |||||||||||| || |||||| | |||| |||||||||||||||||| ||||||||||||    
T  2404072 taacttttctagatccttctaggcttatgtactagagtatccatatctctagacttttctt 2404012  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 173
Target Start/End: Complemental strand, 734823 - 734763
Alignment:
Q  113 taacttttctaggtctttctagtcatatgaactagagtatccatatctttagacttttctt 173  Q
    |||||||||||| || ||||||   |||| |||||||||||||||||| ||||||||||||    
T  734823 taacttttctagatccttctaggtttatgtactagagtatccatatctctagacttttctt 734763  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 173
Target Start/End: Complemental strand, 29833320 - 29833260
Alignment:
Q  113 taacttttctaggtctttctagtcatatgaactagagtatccatatctttagacttttctt 173  Q
    |||||||||||| || |||||| | |||| |||||||||||||| ||| ||||||||||||    
T  29833320 taacttttctagatccttctaggcttatgtactagagtatccatgtctctagacttttctt 29833260  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 113 - 173
Target Start/End: Original strand, 3932654 - 3932714
Alignment:
Q  113 taacttttctaggtctttctagtcatatgaactagagtatccatatctttagacttttctt 173  Q
    |||||||||||| || |||||| | |||| |||||||||||||||||| ||||||||||||    
T  3932654 taacttttctagatccttctaggcttatgtactagagtatccatatctctagacttttctt 3932714  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 113 - 173
Target Start/End: Original strand, 3934893 - 3934953
Alignment:
Q  113 taacttttctaggtctttctagtcatatgaactagagtatccatatctttagacttttctt 173  Q
    |||||||||||| || |||||| | |||| |||||||||||||||||| ||||||||||||    
T  3934893 taacttttctagatccttctaggcttatgtactagagtatccatatctctagacttttctt 3934953  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 113 - 173
Target Start/End: Complemental strand, 8733742 - 8733682
Alignment:
Q  113 taacttttctaggtctttctagtcatatgaactagagtatccatatctttagacttttctt 173  Q
    |||||||||||| || |||||| | |||| |||||||||||||||||| ||||||||||||    
T  8733742 taacttttctagatccttctaggcttatgtactagagtatccatatctctagacttttctt 8733682  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 113 - 173
Target Start/End: Original strand, 19786702 - 19786762
Alignment:
Q  113 taacttttctaggtctttctagtcatatgaactagagtatccatatctttagacttttctt 173  Q
    |||||||||||| || |||||| | |||| |||||||||||||||||| ||||||||||||    
T  19786702 taacttttctagatccttctaggcttatgtactagagtatccatatctctagacttttctt 19786762  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 113 - 173
Target Start/End: Original strand, 19789008 - 19789068
Alignment:
Q  113 taacttttctaggtctttctagtcatatgaactagagtatccatatctttagacttttctt 173  Q
    |||||||||||| || |||||| | |||| |||||||||||||||||| ||||||||||||    
T  19789008 taacttttctagatccttctaggcttatgtactagagtatccatatctctagacttttctt 19789068  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 156
Target Start/End: Complemental strand, 42678840 - 42678772
Alignment:
Q  88 ataaaataaagcattaggaaaatagtaacttttctaggtctttctagtcatatgaactagagtatccat 156  Q
    ||||||||||||| |||||||||  |||  ||||||| || |||||||||||||| |||||||||||||    
T  42678840 ataaaataaagcactaggaaaatcttaatgtttctagatccttctagtcatatgacctagagtatccat 42678772  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 173
Target Start/End: Original strand, 3052126 - 3052203
Alignment:
Q  96 aagcattaggaaaatagtaacttttctaggtctttctagtcatatgaactagagtatccatatctttagacttttctt 173  Q
    |||||||||| || |  |||||||||||| || |||||||  |||| |||||| ||||||||||| ||||||||||||    
T  3052126 aagcattagggaagtcttaacttttctagatccttctagttttatgtactagaatatccatatctctagacttttctt 3052203  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 173
Target Start/End: Complemental strand, 36464466 - 36464408
Alignment:
Q  115 acttttctaggtctttctagtcatatgaactagagtatccatatctttagacttttctt 173  Q
    |||||||||| || |||||||  |||| ||||||||||||||||||  |||||||||||    
T  36464466 acttttctagatccttctagttttatgtactagagtatccatatctccagacttttctt 36464408  T

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Target: scaffold0050 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 175
Target Start/End: Original strand, 29284 - 29341
Alignment:
Q  118 tttctaggtctttctagtcatatgaactagagtatccatatctttagacttttcttgt 175  Q
    ||||||| || ||||||||||||| ||||||  |||||||||| ||||||||||||||    
T  29284 tttctagatccttctagtcatatgtactagaacatccatatctctagacttttcttgt 29341  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 158
Target Start/End: Original strand, 21199211 - 21199281
Alignment:
Q  88 ataaaataaagcattaggaaaatagtaacttttctaggtctttctagtcatatgaactagagtatccatat 158  Q
    ||||||||||||| |||  ||||  |||  ||||||| || ||||||||||||||||| ||||||||||||    
T  21199211 ataaaataaagcactagttaaatcttaatgtttctagatccttctagtcatatgaactggagtatccatat 21199281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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