View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21232_low_1 (Length: 787)
Name: NF21232_low_1
Description: NF21232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21232_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 683; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 683; E-Value: 0
Query Start/End: Original strand, 1 - 775
Target Start/End: Original strand, 8931624 - 8932404
Alignment:
| Q |
1 |
agcttttgagatgagaaagcgattcagcactaaggtactctacaaggcttgctgttgcatttctcctgcttaagctttatcagcatacaacacaacttaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
8931624 |
agcttttgagatgagaaagcgattcagcactaaggtactctacaaggcttgctgttgcatttctcctgcttaagctttatcagcatacaagacaacttaa |
8931723 |
T |
|
| Q |
101 |
a-------gagaaacccgcacacgctaaacattagatggaacacatgcgagtacacaccaaaaagagataaaaataacgcacagagtgaacgtggttcgg |
193 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
8931724 |
aatatcaggagaaacccgcacacgccaaacattagatggaacacatgcgagtacacaccgaaaaaagataaaaataacgcacagattgaacgtggttcgg |
8931823 |
T |
|
| Q |
194 |
cacttcatacctgctttcatgaaaacatctcagcataaagtatgcactgtaacctcaaggtgctaactcggtggtaagagtttagcattgtaaccgcaag |
293 |
Q |
| |
|
||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8931824 |
cacctcatacctgcattcatgaaaacatctcagcataaagtatgcactgtaacctcaaggtgctaactcggtggtaagagtttagcattgtaaccgcaag |
8931923 |
T |
|
| Q |
294 |
gtgctgagttcaaatccccactgggacggctgtaaaatggttattagtccaataattggattacatcaaagtaagacagcaaaccatgtctactaaacat |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8931924 |
gtgctgagttcaaatccccactgggacggctgtaaaatggttattagtccaataattggattacatcaaagtaagacagcaaaccatgtctactaaacaa |
8932023 |
T |
|
| Q |
394 |
ataaactcaatgtagcaaatcaaaacctcgctgtaaaatggtcaatacaagcagcatttgatagaataaattatcaaacaaaccttttcaagttatcatg |
493 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
8932024 |
ataaactcaatgtagcaaatcaaaacctcgctgtaaaatggtcaatacaagcagcatttgatagaataaataatcaaacaaaccttttcaagttatcatg |
8932123 |
T |
|
| Q |
494 |
ggagcaaaacattgcaacaacatattcatttgatagcaagagaacaagaacaatagactaatctttggtttgtgaaattaattattggaaactcaatcnn |
593 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8932124 |
ggagcaaaacattgcaacaacatattcatttgatagcaagagaacaagaacaatagactaatctttggtttgtgaaattaattattggaaactcaatc-a |
8932222 |
T |
|
| Q |
594 |
nnnnnntaatattcagaaataatttgcttatggtagaatttcatgggaaaacagctgcagaactatccaaaattttcaatttgtgtttaaaaggattcca |
693 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8932223 |
aaaaaataatattcagaaataatttgcttatggtagaatttcatgggaaaacagctgcagaactatccaaaattttcaatttgtgtttaaaaggattcca |
8932322 |
T |
|
| Q |
694 |
gaacagaagttcattttgagctcaaattatgaaggaaattctatccatgggcttcattggagacacatcattctttcatctc |
775 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8932323 |
gaacagaagttcattttgagctcaaattatgaaggaaattctgtccataggcttcattggagacacatcattctttcatctc |
8932404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 259 - 341
Target Start/End: Complemental strand, 49443658 - 49443576
Alignment:
| Q |
259 |
actcggtggtaagagtttagcattgtaaccgcaaggtgctgagttcaaatccccactgggacggctgtaaaatggttattagt |
341 |
Q |
| |
|
|||| |||||||||||||||| |||||||| |||||| | ||||||||||||| | ||||||| |||||||||||||||||| |
|
|
| T |
49443658 |
actctgtggtaagagtttagccttgtaacctcaaggtacaaagttcaaatcccctcggggacggttgtaaaatggttattagt |
49443576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 251 - 312
Target Start/End: Original strand, 50892220 - 50892281
Alignment:
| Q |
251 |
aggtgctaactcggtggtaagagtttagcattgtaaccgcaaggtgctgagttcaaatcccc |
312 |
Q |
| |
|
|||||||| ||| |||||||||| ||||| |||||||| ||||||||||||||| ||||||| |
|
|
| T |
50892220 |
aggtgctagctcagtggtaagagcttagccttgtaacctcaaggtgctgagttctaatcccc |
50892281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 251 - 312
Target Start/End: Complemental strand, 48751439 - 48751378
Alignment:
| Q |
251 |
aggtgctaactcggtggtaagagtttagcattgtaaccgcaaggtgctgagttcaaatcccc |
312 |
Q |
| |
|
|||||||| || |||| ||||| |||||||||||||| |||| |||||||||| ||||||| |
|
|
| T |
48751439 |
aggtgctagctaagtggcaagagcttagcattgtaacctcaagttgctgagttcgaatcccc |
48751378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 251 - 312
Target Start/End: Original strand, 31584881 - 31584942
Alignment:
| Q |
251 |
aggtgctaactcggtggtaagagtttagcattgtaaccgcaaggtgctgagttcaaatcccc |
312 |
Q |
| |
|
|||||||| ||| ||||||||| |||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
31584881 |
aggtgctagctcaatggtaagagcttagcattgtaacctcaaggtactgagttcaaatcccc |
31584942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 251 - 332
Target Start/End: Complemental strand, 36198980 - 36198899
Alignment:
| Q |
251 |
aggtgctaactcggtggtaagagtttagcattgtaaccgcaaggtgctgagttcaaatccccactgggacggctgtaaaatg |
332 |
Q |
| |
|
|||||||| || |||||||||| ||||| |||||||| |||||| |||||||||||||||| | |||| || ||||||||| |
|
|
| T |
36198980 |
aggtgctagcttagtggtaagagcttagccttgtaacctcaaggtactgagttcaaatcccctcggggatggttgtaaaatg |
36198899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 272 - 309
Target Start/End: Original strand, 23548584 - 23548621
Alignment:
| Q |
272 |
agtttagcattgtaaccgcaaggtgctgagttcaaatc |
309 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
23548584 |
agtttagcattgtaacctcgaggtgctgagttcaaatc |
23548621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 251 - 334
Target Start/End: Original strand, 43710570 - 43710653
Alignment:
| Q |
251 |
aggtgctaactcggtggtaagagtttagcattgtaaccgcaaggtgctgagttcaaatccccactgggacggctgtaaaatggt |
334 |
Q |
| |
|
|||||||| | |||||||||||| ||||| |||||||| | ||||| ||||||| ||||||| | ||||| | ||| ||||||| |
|
|
| T |
43710570 |
aggtgctagcacggtggtaagagattagccttgtaaccccgaggtgttgagttcgaatcccctcggggacagttgtgaaatggt |
43710653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 251 - 341
Target Start/End: Original strand, 43427779 - 43427869
Alignment:
| Q |
251 |
aggtgctaactcggtggtaagagtttagcattgtaaccgcaaggtgctgagttcaaatccccactgggacggctgtaaaatggttattagt |
341 |
Q |
| |
|
|||||||| ||| ||||||||||||| || |||||||| ||||| |||||||||||||| | |||| |||||||||||||||||| |
|
|
| T |
43427779 |
aggtgctagctcagtggtaagagtttggccttgtaacctcaagggagggagttcaaatccccttggatacggttgtaaaatggttattagt |
43427869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University