View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21232_low_2 (Length: 524)
Name: NF21232_low_2
Description: NF21232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21232_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 140; Significance: 4e-73; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 187 - 334
Target Start/End: Original strand, 1984613 - 1984760
Alignment:
| Q |
187 |
gtatattatgctaagctaattactctctcatcctgataggataaaataaacatacaattacacgaccgtcttgacactaatttatgataatagaaatgca |
286 |
Q |
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| T |
1984613 |
gtatattaagctaagctaattactctctcatcttgataggataaaataaacatacaattacacgaccgtcttgacactaatttatgataatagaaatgca |
1984712 |
T |
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| Q |
287 |
ttaacagttaataaaaataatttagtaaaaatattagtttttattttg |
334 |
Q |
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| T |
1984713 |
ttaacagttaataaaaataatttagtaaaaatattagtttttattttg |
1984760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 399 - 509
Target Start/End: Original strand, 1984825 - 1984935
Alignment:
| Q |
399 |
gtgtgaaatgagcttattccacaattttaatgggacacatggaacattataataaacaactaatgtaacattattcccttnnnnnnnctaatgtaacatt |
498 |
Q |
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| T |
1984825 |
gtgtgaaatgagcttattccacaattttaatgggacacatggaacattataataaacaactaatgtaacattattcccttaaaaaaactaatgtaacatt |
1984924 |
T |
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| Q |
499 |
atcatctttgt |
509 |
Q |
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|||||| |||| |
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| T |
1984925 |
atcatcattgt |
1984935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 87 - 153
Target Start/End: Original strand, 1984514 - 1984580
Alignment:
| Q |
87 |
taactaccacctctaagctaagctaggctctttctatggacatcgacttgacgctgctttatgattg |
153 |
Q |
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| T |
1984514 |
taactaccacctctaagctaagctaggctctttctatggacatcgacttgacgctgctttatgattg |
1984580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 1984437 - 1984487
Alignment:
| Q |
11 |
catcaacatcatcaatcattagagatatcaattttcaaatctatcatgcct |
61 |
Q |
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| T |
1984437 |
catcaacatcatcaatcattagagatatcaattttcaaatctatcatgcct |
1984487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 315
Target Start/End: Original strand, 33315434 - 33315483
Alignment:
| Q |
266 |
atttatgataatagaaatgcattaacagttaataaaaataatttagtaaa |
315 |
Q |
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||||||||||||| |||| |||||||| ||||||||||||||| ||||| |
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| T |
33315434 |
atttatgataataaaaatacattaacaagtaataaaaataattttgtaaa |
33315483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 266 - 316
Target Start/End: Complemental strand, 12491700 - 12491650
Alignment:
| Q |
266 |
atttatgataatagaaatgcattaacagttaataaaaataatttagtaaaa |
316 |
Q |
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||||||||||||| |||| ||| ||| |||||||||||||||||| ||||| |
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| T |
12491700 |
atttatgataataaaaatacatcaaccgttaataaaaataatttaataaaa |
12491650 |
T |
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