View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21233_high_1 (Length: 1052)
Name: NF21233_high_1
Description: NF21233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21233_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 929; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 929; E-Value: 0
Query Start/End: Original strand, 13 - 1039
Target Start/End: Complemental strand, 48730382 - 48729358
Alignment:
| Q |
13 |
agcacagatgggagatatagacttgctatacaaactgattcaaatggatccttacatcttagaacgctataatttaataccatttgttgatactcctttg |
112 |
Q |
| |
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|||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48730382 |
agcacaaatgggagatatagacttgctattcaaactgattcaaatcgatccttacatcttagaacgctataatttaataccatttgttgatactcctttg |
48730283 |
T |
|
| Q |
113 |
catattgctgcagcttctggacatacaagttttgccactgagattatgagactaaaaccttcatttgcttggaaactaaacgagtatggactcagtccca |
212 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48730282 |
catattgctgcagcttctggacatacaagttttgccactgagattatgagactaaaaccttcatttgcttggaaactaaacgagtatggactcagtccca |
48730183 |
T |
|
| Q |
213 |
tacatcttgctttacaaaacaaatatcacagaatggtttgtcgctttgtagatattaataaagatcttgtccgagtcaaagggatagagggtctaactcc |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
48730182 |
tacatcttgctttacaaaacaaatatcacagaatggtttgtcgctttgtagatattaataaagaccttgtccgagtcaaagggagagagggtctaactcc |
48730083 |
T |
|
| Q |
313 |
attgcatattgctactcaaactggaaactttgatcttgtagtaaaattcctgtctgtttgtccaggttgtattgaagatgttacagttcgaagtgagact |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48730082 |
attgcatattgctactcaaactggaaactttgatcttgtagtaaaattcctgtttgtttgtccaggttgtattgaagatgttacagttcgaagtgagact |
48729983 |
T |
|
| Q |
413 |
gctctgcatattgctgtgaaatataagcagtttcatgttcttgagatcttgcttggttggcttcgaaggacatgccacagacgttctcaccacaaggaaa |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48729982 |
gctctgcatattgctgtgaaatataagcagtttcatgttcttgagatcttgcttggttggcttcgaaggacatgccacagacgttctcaccacaaggaaa |
48729883 |
T |
|
| Q |
513 |
aacgggttctgaattgggaggatgaagcaggcaacacaatcctgcacatgtcagttctcaatagcttcccacaggtatatgagacacatccctatttctc |
612 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48729882 |
aacgggttctgaattgggaggatgaagcaggcaacacaatcctgcacatgtcagttctcaatagcttcccacaggtatatgagacacatccctatttctc |
48729783 |
T |
|
| Q |
613 |
ttttctttctacttttttcataaaaatttggccaatgcaactgcaactgcaatgtggccgagaggttcttctatagcgattgcggttacatacctcaatt |
712 |
Q |
| |
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||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
48729782 |
ttttctttctacttttttcataaaaatgtggccgatgcaactgcaactgcaatgtggcccagaggttcttctatagcgattgcggttacatacctcaatt |
48729683 |
T |
|
| Q |
713 |
taaaactaatattttcttctgtcttatttatttataagagacatttatttgagtcaataaaagttgatgtatctgattaaaaatttgaattagatgtatc |
812 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||| |||| |
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|
| T |
48729682 |
taaaactaatattttcctctgtcttatttatttataagagac----atttgagttaataaaagttgatgtatctgattaaaattttgaattagatatatc |
48729587 |
T |
|
| Q |
813 |
aacttttgtttacccaaatgtttttctttt--tgattgaaaatcaaaatcaatctatgtttcaatatattaattaattcaactattatgttggccttaga |
910 |
Q |
| |
|
|||||||||| |||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48729586 |
aacttttgttgacccaaatgtttttttttttattattgaaaatcaaaatcaatctatgtttcaatatattaattaattcaactattatgttggccttaga |
48729487 |
T |
|
| Q |
911 |
gtttgacattttcaaagtattaataatttttcgcttctcctattttaaaaaattaattaattcagctatggtcatttcatattgtgcaggcagttgaatt |
1010 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
48729486 |
gtttgacattttcaaagtattaataatttttcgcttctcctatttaaaaaaattaattaattcagctatggtcatttcatattgtgcaggcagttggatt |
48729387 |
T |
|
| Q |
1011 |
gttgatagatagcaatatagacataaatg |
1039 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
48729386 |
gttgatagatagcaatatagacataaatg |
48729358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 234
Target Start/End: Original strand, 4818941 - 4819091
Alignment:
| Q |
84 |
atttaataccatttgttgatactcctttgcatattgctgcagcttctggacatacaagttttgccactgagattatgagactaaaaccttcatttgcttg |
183 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| || || ||| |||||| | |||||||||| ||||||||||||||||||| |
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| T |
4818941 |
atttaataccatttgttgaaactcctttgcatattgctgcatctatgggtcatctccaatttgcctccgagattatgaagttaaaaccttcatttgcttg |
4819040 |
T |
|
| Q |
184 |
gaaactaaacgagtatggactcagtcccatacatcttgctttacaaaacaa |
234 |
Q |
| |
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||| ||||| | | ||| ||||||| || ||||||||| | |||||||| |
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| T |
4819041 |
gaagctaaatcaacaaggattcagtcctatccatcttgctatgcaaaacaa |
4819091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 741 - 833
Target Start/End: Original strand, 7661091 - 7661179
Alignment:
| Q |
741 |
tatttataagagacatttatttgagtcaataaaagttgatgtatctgattaaaaatttgaattagatgtatcaacttttgtttacccaaatgt |
833 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||||| ||| | ||||| ||| | ||||| ||||||||||||| |||||||||| |
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| T |
7661091 |
tatttataagagaaatttat----gtcaataaaagttgatgtagctggtaaaaaaattggactagatacatcaacttttgttgacccaaatgt |
7661179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000006; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 84 - 192
Target Start/End: Complemental strand, 31040851 - 31040743
Alignment:
| Q |
84 |
atttaataccatttgttgatactcctttgcatattgctgcagcttctggacatacaagttttgccactgagattatgagactaaaaccttcatttgcttg |
183 |
Q |
| |
|
||||||| ||||||||||| |||||| ||||||| |||||| || |||||| ||||||||||| ||||||||| | |||||||||||||| || |
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|
| T |
31040851 |
atttaattccatttgttgaaactcctctgcatatagctgcatctatgggacatgttcaatttgccactgaaattatgagattgaaaccttcatttgcatg |
31040752 |
T |
|
| Q |
184 |
gaaactaaa |
192 |
Q |
| |
|
||| ||||| |
|
|
| T |
31040751 |
gaagctaaa |
31040743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 766 - 829
Target Start/End: Complemental strand, 42842920 - 42842857
Alignment:
| Q |
766 |
tcaataaaagttgatgtatctgattaaaaatttgaattagatgtatcaacttttgtttacccaa |
829 |
Q |
| |
|
|||| |||| ||||||||| ||| ||| ||||||| |||||||||||||||||||||||||| |
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|
| T |
42842920 |
tcaacaaaaattgatgtatttgaactaaattttgaatcagatgtatcaacttttgtttacccaa |
42842857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 759 - 797
Target Start/End: Complemental strand, 17007012 - 17006974
Alignment:
| Q |
759 |
atttgagtcaataaaagttgatgtatctgattaaaaatt |
797 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||| |
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|
| T |
17007012 |
attttagtcaataaaagttgatgtatctgattaacaatt |
17006974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 759 - 797
Target Start/End: Original strand, 17570235 - 17570273
Alignment:
| Q |
759 |
atttgagtcaataaaagttgatgtatctgattaaaaatt |
797 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
17570235 |
attttagtcaataaaagttgatgtatctgattaacaatt |
17570273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 761 - 803
Target Start/End: Original strand, 24216131 - 24216173
Alignment:
| Q |
761 |
ttgagtcaataaaagttgatgtatctgattaaaaatttgaatt |
803 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||| |||| |
|
|
| T |
24216131 |
ttgagtcaacaaaagttgatgtatctgatttaaaatttaaatt |
24216173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 798
Target Start/End: Complemental strand, 8587269 - 8587232
Alignment:
| Q |
761 |
ttgagtcaataaaagttgatgtatctgattaaaaattt |
798 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |
|
|
| T |
8587269 |
ttgagtcaataaaagttgatgtatctagttaaaaattt |
8587232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 192
Target Start/End: Complemental strand, 31076001 - 31075952
Alignment:
| Q |
143 |
tttgccactgagattatgagactaaaaccttcatttgcttggaaactaaa |
192 |
Q |
| |
|
||||||||||| ||||||||| | |||||||||||||||| ||| ||||| |
|
|
| T |
31076001 |
tttgccactgaaattatgagattgaaaccttcatttgctttgaagctaaa |
31075952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 759 - 831
Target Start/End: Original strand, 10069236 - 10069308
Alignment:
| Q |
759 |
atttgagtcaataaaagttgatgtatctgattaaaaatttgaattagatgtatcaacttttgtttacccaaat |
831 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||| ||| | ||||| || |||||||||| ||| |||| |
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|
| T |
10069236 |
atttgagtcaataaaagtttatgtatctggttaaaaaattggactagatacattaacttttgttgacctaaat |
10069308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 223
Target Start/End: Complemental strand, 26087599 - 26087519
Alignment:
| Q |
143 |
tttgccactgagattatgagactaaaaccttcatttgcttggaaactaaacgagtatggactcagtcccatacatcttgct |
223 |
Q |
| |
|
||||||||||| ||||||| | |||||||||| ||||||||||||||| || | ||| |||||||||| ||||||||| |
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|
| T |
26087599 |
tttgccactgaaattatgaatttgaaaccttcatatgcttggaaactaaatcagcaaggattcagtcccatccatcttgct |
26087519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 818
Target Start/End: Complemental strand, 21537968 - 21537911
Alignment:
| Q |
761 |
ttgagtcaataaaagttgatgtatctgattaaaaatttgaattagatgtatcaacttt |
818 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||| |||| ||||||||| |
|
|
| T |
21537968 |
ttgagtcaacaaaagttgatgtatctgaactaaaatttgaatcagatacatcaacttt |
21537911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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