View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21233_high_11 (Length: 528)

Name: NF21233_high_11
Description: NF21233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21233_high_11
NF21233_high_11
[»] chr3 (18 HSPs)
chr3 (13-407)||(23407571-23407971)
chr3 (13-224)||(23466237-23466451)
chr3 (13-266)||(23429623-23429866)
chr3 (13-266)||(23389834-23390085)
chr3 (296-511)||(23466580-23466787)
chr3 (62-309)||(23489582-23489818)
chr3 (62-284)||(23444552-23444764)
chr3 (200-310)||(23466451-23466564)
chr3 (403-511)||(23420217-23420320)
chr3 (361-440)||(42029386-42029465)
chr3 (361-499)||(39439908-39440040)
chr3 (22-115)||(23436878-23436971)
chr3 (361-411)||(25045316-25045366)
chr3 (453-499)||(27011216-27011262)
chr3 (459-499)||(25045413-25045453)
chr3 (361-403)||(32278317-32278359)
chr3 (363-405)||(40026171-40026213)
chr3 (459-499)||(42029333-42029373)
[»] scaffold0022 (2 HSPs)
scaffold0022 (361-499)||(44167-44299)
scaffold0022 (361-499)||(77888-78020)
[»] chr5 (4 HSPs)
chr5 (361-499)||(4943476-4943608)
chr5 (361-499)||(11617183-11617315)
chr5 (363-440)||(7506085-7506162)
chr5 (459-499)||(30084941-30084981)
[»] chr2 (7 HSPs)
chr2 (361-499)||(28218967-28219099)
chr2 (361-440)||(6476770-6476849)
chr2 (459-499)||(44246372-44246412)
chr2 (365-499)||(7444725-7444853)
chr2 (453-499)||(10354290-10354336)
chr2 (459-499)||(1499270-1499310)
chr2 (361-397)||(10354209-10354245)
[»] chr1 (11 HSPs)
chr1 (361-496)||(16302758-16302887)
chr1 (453-499)||(48046433-48046479)
chr1 (454-499)||(42365918-42365963)
chr1 (459-499)||(15581607-15581647)
chr1 (459-499)||(42934260-42934300)
chr1 (361-400)||(7741059-7741098)
chr1 (361-408)||(48046406-48046453)
chr1 (453-499)||(50678183-50678229)
chr1 (454-499)||(49764933-49764978)
chr1 (459-511)||(7741146-7741198)
chr1 (459-499)||(34969816-34969856)
[»] chr4 (14 HSPs)
chr4 (454-499)||(3121264-3121309)
chr4 (454-499)||(46944082-46944127)
chr4 (459-499)||(22405077-22405117)
chr4 (361-440)||(21263684-21263763)
chr4 (459-499)||(4292688-4292728)
chr4 (459-499)||(35033865-35033905)
chr4 (356-403)||(35033955-35034002)
chr4 (453-499)||(35292080-35292126)
chr4 (461-499)||(50859210-50859248)
chr4 (454-499)||(31227734-31227779)
chr4 (454-495)||(41223714-41223755)
chr4 (454-499)||(48084718-48084763)
chr4 (361-397)||(3121182-3121218)
chr4 (459-499)||(21263631-21263671)
[»] chr8 (6 HSPs)
chr8 (454-498)||(38679777-38679821)
chr8 (359-433)||(34924850-34924924)
chr8 (361-433)||(14112447-14112519)
chr8 (454-495)||(34924794-34924835)
chr8 (454-499)||(42025398-42025443)
chr8 (459-499)||(30800223-30800263)
[»] scaffold0227 (1 HSPs)
scaffold0227 (364-499)||(239-368)
[»] chr6 (1 HSPs)
chr6 (359-408)||(29644160-29644209)
[»] scaffold0224 (1 HSPs)
scaffold0224 (459-499)||(12471-12511)
[»] scaffold0110 (1 HSPs)
scaffold0110 (459-499)||(38621-38661)
[»] scaffold0039 (1 HSPs)
scaffold0039 (355-433)||(56859-56937)
[»] chr7 (2 HSPs)
chr7 (362-403)||(19625367-19625408)
chr7 (459-499)||(19625458-19625498)


Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 13 - 407
Target Start/End: Original strand, 23407571 - 23407971
Alignment:
Q  13 aatatggcaacaagagaatatttagacaaacaatgatgcacataatatagtgtgaatctaa---tttcctatatta---aactaaatagttgttacataa 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||   ||||||||||||||||||  |    
T  23407571 aatatggcaacaagagaatatttagacaaacaatgatgcacataatatagtgtgaatctaaatatttcctatattattaaactaaatagttgttacagga 23407670  T
Q  107 ggttccatttctttctatttgnnnnnnnaccaatcaaattcagtaacctttaaacaaatatcatatagttgaacggtgaatcttgaaccttcttcatatg 206  Q
    |||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23407671 ggttccatttctttctatttgtttttttaccaatcaaattcagtaacctttaaacaaatatcatatagttgaacggtgaatcttgaaccttcttcatatg 23407770  T
Q  207 ttcaatggttggtccaatttagaaaatattaatgaagacctgctttgataaattatttatttaaaaacttatttatatcattttttcctaacaaggaatt 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  23407771 ttcaatggttggtccaatttagaaaatattaatgaagacctgctttgataaattatttatttaaaaacttatttatatccttttttcctaacaaggaatt 23407870  T
Q  307 gagatggcccccttgggacctcatcccccaactccacccatggccaaccttaaagctatgtttggattggtagagagtggtggaatggaatagaatgaag 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23407871 gagatggcccccttgggacctcatcccccaactccacccatggccaaccttaaagctatgtttggattggtagagagtggtggaatggaatagaatgaag 23407970  T
Q  407 t 407  Q
    |    
T  23407971 t 23407971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 13 - 224
Target Start/End: Original strand, 23466237 - 23466451
Alignment:
Q  13 aatatggcaacaagagaatatttagacaaacaatgatgcacataatatagtgtgaatctaatttcctatattaaactaaatagttgttacataaggttcc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23466237 aatatggcaacaagagaatatttagacaaacaatgatgcacataatatagtgtgaatctaatttcctatattaaactaaatagttgttacataaggttcc 23466336  T
Q  113 atttctttctatttgnnnnnnnaccaatcaaattcagtaacctttaaacaaatatc--atatagttgaa-cggtgaatcttgaaccttcttcatatgttc 209  Q
    |||||||||||||||       |||||||||||| |||||||||||||||||||||  ||||||||||| || ||||||||||||||| |||| ||||||    
T  23466337 atttctttctatttgtttttttaccaatcaaattaagtaacctttaaacaaatatcatatatagttgaaccgttgaatcttgaaccttattcacatgttc 23466436  T
Q  210 aatggttggtccaat 224  Q
    ||||| |||||||||    
T  23466437 aatggctggtccaat 23466451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 13 - 266
Target Start/End: Original strand, 23429623 - 23429866
Alignment:
Q  13 aatatggcaacaagagaatatttagacaaa-caatgatgcacataatatagtgtgaatctaatttcctatattaaactaaatagttgttacataaggttc 111  Q
    |||||||| ||||||| ||||||||| ||| ||| ||||||| ||   || |||||||||||||||||||| |||||||| |||||||||||  ||||||    
T  23429623 aatatggctacaagaggatatttagaaaaaacaacgatgcactta---taatgtgaatctaatttcctatactaaactaagtagttgttacaccaggttc 23429719  T
Q  112 catttctttctatttgnnnnnnnaccaatcaaattcagtaacctttaaacaaatatcatatagttgaacggtgaatcttgaaccttcttcatatgttcaa 211  Q
    ||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||| ||||||||    
T  23429720 catttctttctatttgtttctt-accaatcaaattcagtaacctttaaacaaatatcatatagttgaa-------tcttgaaccttcttcacatgttcaa 23429811  T
Q  212 tggttggtccaatttagaaaatattaatgaagacctgctttgataaattatttat 266  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23429812 tggctggtccaatttagaaaatattaatgaagacctgctttgataaattatttat 23429866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 13 - 266
Target Start/End: Original strand, 23389834 - 23390085
Alignment:
Q  13 aatatggcaacaagagaatatttagacaaa-caatgatgcacataatatagtgtgaatctaatttcctatattaaactaaatagttgttacataaggttc 111  Q
    |||||||| ||||||| ||||||||| ||| ||| ||||||| ||   || |||||||||| ||||||||| |||||||| |||||||||||  ||||||    
T  23389834 aatatggctacaagaggatatttagaaaaaacaacgatgcactta---taatgtgaatctagtttcctatactaaactaagtagttgttacaccaggttc 23389930  T
Q  112 catttctttctatttgnnnnnnnaccaatcaaattcagtaacctttaaacaaatatcatatagttgaacggt-gaatcttgaaccttcttcatatgttca 210  Q
    ||||| ||||||||||       | |||||||||||||||||||||||||||||| ||||| ||||||| || ||||||||||||||||||| |||||||    
T  23389931 catttttttctatttgtttctt-agcaatcaaattcagtaacctttaaacaaataccatatggttgaaccgttgaatcttgaaccttcttcacatgttca 23390029  T
Q  211 atggttggtccaatttagaaaatattaatgaagacctgctttgataaattatttat 266  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  23390030 atggctggtccaatttagaaaatattaatgaatacctgctttgataaattatttat 23390085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 296 - 511
Target Start/End: Original strand, 23466580 - 23466787
Alignment:
Q  296 aacaaggaattgagatggcccccttgggacctcatcccccaactccacccatggccaaccttaaagctatgtttggattggtagagagtggtggaatgga 395  Q
    ||||||||||||||||||||| |||  || ||||||||  ||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  23466580 aacaaggaattgagatggccctcttccgatctcatccc--aaccccaccaatggccaactttaaagctatgtttggattggtagagagtggtggaatgga 23466677  T
Q  396 atagaatgaagtgggaaagattcacattctattgtttgattttgtnnnnnnnnnnnnggaatagaatggaatggagtgtaatggaactcattccatccaa 495  Q
    || ||||||||||||| ||||||||||||||||||||| ||||||            |||||||||||||||| |||||||||||||||||| |||||||    
T  23466678 attgaatgaagtgggatagattcacattctattgtttggttttgt-----aaaaaaaggaatagaatggaatgtagtgtaatggaactcattgcatccaa 23466772  T
Q  496 tacccacctatttaac 511  Q
    || |||||||||||||    
T  23466773 ta-ccacctatttaac 23466787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 62 - 309
Target Start/End: Original strand, 23489582 - 23489818
Alignment:
Q  62 gtgtgaatctaatttcctatattaaactaaatagttgttacataaggttccatttctttctatttgnnnnnnnaccaatcaaattcagtaacctttaaac 161  Q
    ||||||||||||||| |||||||||||||||||| ||||| || |||| |||||||||| ||||||       ||||||||| |||||||||||||||||    
T  23489582 gtgtgaatctaattttctatattaaactaaatagctgttagatgaggt-ccatttctttttatttgtttctt-accaatcaatttcagtaacctttaaac 23489679  T
Q  162 aaatatcatatagttgaacggtgaatcttgaaccttcttcatatgttcaatggttggtccaatttagaaaatattaatgaagacctgctttgataaatta 261  Q
    |||| |||||| ||||||       || ||||| ||||||| | ||||||||| ||||||||||||||||||||||||||| || |||||||||||||||    
T  23489680 aaatgtcatattgttgaa-------tcgtgaactttcttcacacgttcaatggctggtccaatttagaaaatattaatgaatacatgctttgataaatta 23489772  T
Q  262 tttatttaaaaacttatttatatcattttttcctaacaaggaattgag 309  Q
    |||| | ||||||| |||||||| | ||||| |  |||||||||||||    
T  23489773 ttta-tcaaaaactgatttatat-actttttacacacaaggaattgag 23489818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 62 - 284
Target Start/End: Original strand, 23444552 - 23444764
Alignment:
Q  62 gtgtgaatctaatttcctatattaaactaaatagttgttacataaggttccatttctttctatttgnnnnnnnaccaatcaaattcagtaacctttaaac 161  Q
    ||||||||||||||| |||||||||| |||||||||||||||| |||| |||||||||| ||||||       ||||||||| |||||||||||||||||    
T  23444552 gtgtgaatctaattttctatattaaagtaaatagttgttacatgaggt-ccatttctttttatttgtttctt-accaatcaatttcagtaacctttaaac 23444649  T
Q  162 aaatatcatatagttgaacggtgaatcttgaaccttcttcatatgttcaatggttggtccaatttagaaaatattaatgaagacctgctttgataaatta 261  Q
    |||| |||||| ||||||       || ||||| ||||||| | ||||||||| |||||||||| |||||||||||||||| || |||||||||||||||    
T  23444650 aaatgtcatattgttgaa-------tcgtgaactttcttcacacgttcaatggctggtccaattgagaaaatattaatgaatacatgctttgataaatta 23444742  T
Q  262 tttatttaaaaacttatttatat 284  Q
    |||| | ||||||| ||||||||    
T  23444743 ttta-tcaaaaactgatttatat 23444764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 200 - 310
Target Start/End: Original strand, 23466451 - 23466564
Alignment:
Q  200 tcatatgttcaatggttggtccaatttagaaaatattaatgaagac---ctgctttgataaattatttatttaaaaacttatttatatcattttttccta 296  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||| |||||| |||    
T  23466451 tcatttgtttaatggttggtccaatttagaaaatattaatgaagacggcctgctttgataaattatttatttaaaaacttatttatatccttttttacta 23466550  T
Q  297 acaaggaattgaga 310  Q
    ||||||||||||||    
T  23466551 acaaggaattgaga 23466564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 403 - 511
Target Start/End: Original strand, 23420217 - 23420320
Alignment:
Q  403 gaagtgggaaagattcacattctattgtttgattttgtnnnnnnnnnnnnggaatagaatggaatggagtgtaatggaactcattccatccaatacccac 502  Q
    ||||||||| ||||||||||||||||||||| ||||||            ||||||||||||| ||||||||||||||||||||| ||||||||| ||||    
T  23420217 gaagtgggatagattcacattctattgtttggttttgtaaaaaaaa----ggaatagaatggagtggagtgtaatggaactcattacatccaata-ccac 23420311  T
Q  503 ctatttaac 511  Q
    |||||||||    
T  23420312 ctatttaac 23420320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 361 - 440
Target Start/End: Complemental strand, 42029465 - 42029386
Alignment:
Q  361 gctatgtttggattggtagagagtggtggaatggaatagaatgaagtgggaaagattcacattctattgtttgattttgt 440  Q
    ||||||||||||||||| | ||||||||||||||||| ||||| |||||||  ||  ||||||| |||||||| ||||||    
T  42029465 gctatgtttggattggtggtgagtggtggaatggaatggaatggagtgggatggagccacattccattgtttggttttgt 42029386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 361 - 499
Target Start/End: Complemental strand, 39440040 - 39439908
Alignment:
Q  361 gctatgtttggattggtagagagtggtggaatggaatagaatgaagtgggaaagattcacattctattgtttgattttgtnnnnnnnnnnnnggaataga 460  Q
    ||||||||||||||| | ||||||||||||||||||| ||||| ||||||| | |  || |||| |||||||| |||||              |||| ||    
T  39440040 gctatgtttggattgatggagagtggtggaatggaatggaatggagtgggataaaaccatattccattgtttggttttgcaaaaaaa------gaatgga 39439947  T
Q  461 atggaatggagtgtaatggaactcattccatccaatacc 499  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  39439946 atggaatggagtgtgatggaactcattccatccaatacc 39439908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 115
Target Start/End: Original strand, 23436878 - 23436971
Alignment:
Q  22 acaagagaatatttagacaaacaatgatgcacataatatagtgtgaatctaatttcctatattaaac-taaatagttgttacataaggttccatt 115  Q
    ||||||| ||||||||  ||||||||||| ||| | ||||||||||||||| |||||||| ||||||  ||||| ||| | ||||||||||||||    
T  23436878 acaagaggatatttaggaaaacaatgatgtacaca-tatagtgtgaatctagtttcctatgttaaacgaaaataattggtgcataaggttccatt 23436971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 411
Target Start/End: Original strand, 25045316 - 25045366
Alignment:
Q  361 gctatgtttggattggtagagagtggtggaatggaatagaatgaagtggga 411  Q
    ||||||||||||||| | ||||||||||||||||||| ||||||| |||||    
T  25045316 gctatgtttggattgatggagagtggtggaatggaatggaatgaaatggga 25045366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 453 - 499
Target Start/End: Original strand, 27011216 - 27011262
Alignment:
Q  453 ggaatagaatggaatggagtgtaatggaactcattccatccaatacc 499  Q
    ||||| |||||||||||||||| ||||||| ||||||||||||||||    
T  27011216 ggaatggaatggaatggagtgtgatggaacccattccatccaatacc 27011262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 459 - 499
Target Start/End: Original strand, 25045413 - 25045453
Alignment:
Q  459 gaatggaatggagtgtaatggaactcattccatccaatacc 499  Q
    |||||||||||| ||| ||||||||||||||||||||||||    
T  25045413 gaatggaatggaatgtgatggaactcattccatccaatacc 25045453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 361 - 403
Target Start/End: Original strand, 32278317 - 32278359
Alignment:
Q  361 gctatgtttggattggtagagagtggtggaatggaatagaatg 403  Q
    ||||||||||||||| | ||||||||||||||||||| |||||    
T  32278317 gctatgtttggattgatggagagtggtggaatggaatggaatg 32278359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 363 - 405
Target Start/End: Complemental strand, 40026213 - 40026171
Alignment:
Q  363 tatgtttggattggtagagagtggtggaatggaatagaatgaa 405  Q
    ||||||||||||||| ||||||||||||||| ||| |||||||    
T  40026213 tatgtttggattggtggagagtggtggaatgaaatggaatgaa 40026171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 459 - 499
Target Start/End: Complemental strand, 42029373 - 42029333
Alignment:
Q  459 gaatggaatggagtgtaatggaactcattccatccaatacc 499  Q
    |||||||||||||| | ||||||| ||||||||||||||||    
T  42029373 gaatggaatggagtatgatggaacccattccatccaatacc 42029333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 361 - 499
Target Start/End: Complemental strand, 44299 - 44167
Alignment:
Q  361 gctatgtttggattggtagagagtggtggaatggaatagaatgaagtgggaaagattcacattctattgtttgattttgtnnnnnnnnnnnnggaataga 460  Q
    ||||||||||||||| | ||||||||||||||||||| ||||| ||||||| |||| || |||| |||||||| ||||||             |||| ||    
T  44299 gctatgtttggattgatggagagtggtggaatggaatggaatggagtgggatagatccatattccattgtttggttttgtaaaaaat------gaatgga 44206  T
Q  461 atggaatggagtgtaatggaactcattccatccaatacc 499  Q
    |||||||||||||| ||||||| ||||||||||||||||    
T  44205 atggaatggagtgtgatggaacccattccatccaatacc 44167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 361 - 499
Target Start/End: Complemental strand, 78020 - 77888
Alignment:
Q  361 gctatgtttggattggtagagagtggtggaatggaatagaatgaagtgggaaagattcacattctattgtttgattttgtnnnnnnnnnnnnggaataga 460  Q
    ||||||||||||||| | ||||||||||||||||||| ||||| ||||||| |||| || |||| |||||||| ||||||             |||| ||    
T  78020 gctatgtttggattgatggagagtggtggaatggaatggaatggagtgggatagatccatattccattgtttggttttgtaaaaaat------gaatgga 77927  T
Q  461 atggaatggagtgtaatggaactcattccatccaatacc 499  Q
    |||||||||||||| ||||||| ||||||||||||||||    
T  77926 atggaatggagtgtgatggaacccattccatccaatacc 77888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 361 - 499
Target Start/End: Original strand, 4943476 - 4943608
Alignment:
Q  361 gctatgtttggattggtagagagtggtggaatggaatagaatgaagtgggaaagattcacattctattgtttgattttgtnnnnnnnnnnnnggaataga 460  Q
    ||||||||||||||||| | ||||||||||||||||||||||| |||||||  ||  || |||| |||||||| ||||||            || || ||    
T  4943476 gctatgtttggattggtggtgagtggtggaatggaatagaatggagtgggatggagccatattccattgtttggttttgt------aaaaaagggatgga 4943569  T
Q  461 atggaatggagtgtaatggaactcattccatccaatacc 499  Q
    |||||||||||||| ||||||| ||||||||||||||||    
T  4943570 atggaatggagtgtgatggaacccattccatccaatacc 4943608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 361 - 499
Target Start/End: Original strand, 11617183 - 11617315
Alignment:
Q  361 gctatgtttggattggtagagagtggtggaatggaatagaatgaagtgggaaagattcacattctattgtttgattttgtnnnnnnnnnnnnggaataga 460  Q
    ||||||||||||||| | ||||||||||||||||||| ||||| ||||||| | |  || |||| |||||||| |||||              |||| ||    
T  11617183 gctatgtttggattgatggagagtggtggaatggaatggaatggagtgggataaaaccatattccattgtttggttttgcaaaaaat------gaatgga 11617276  T
Q  461 atggaatggagtgtaatggaactcattccatccaatacc 499  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  11617277 atggaatggagtgtgatggaactcattccatccaatacc 11617315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 363 - 440
Target Start/End: Complemental strand, 7506162 - 7506085
Alignment:
Q  363 tatgtttggattggtagagagtggtggaatggaatagaatgaagtgggaaagattcacattctattgtttgattttgt 440  Q
    ||||||||||||||| |||||||||| |||||||| ||||| ||||||| | |  ||||||| |||||||| ||||||    
T  7506162 tatgtttggattggtggagagtggtgaaatggaatggaatggagtgggataaagccacattccattgtttggttttgt 7506085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 459 - 499
Target Start/End: Original strand, 30084941 - 30084981
Alignment:
Q  459 gaatggaatggagtgtaatggaactcattccatccaatacc 499  Q
    |||||||||||| ||| ||||||||||||||||||||||||    
T  30084941 gaatggaatggaatgtgatggaactcattccatccaatacc 30084981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 361 - 499
Target Start/End: Original strand, 28218967 - 28219099
Alignment:
Q  361 gctatgtttggattggtagagagtggtggaatggaatagaatgaagtgggaaagattcacattctattgtttgattttgtnnnnnnnnnnnnggaataga 460  Q
    ||||||||||||||||| | ||||||||||||||||| ||||| |||||||  ||  ||||||| |||||||| ||||||            || || ||    
T  28218967 gctatgtttggattggtggtgagtggtggaatggaatggaatggagtgggatggagccacattccattgtttggttttgt------aaaaaagggatgga 28219060  T
Q  461 atggaatggagtgtaatggaactcattccatccaatacc 499  Q
    |||||||||||||| ||||||| ||||||||||||||||    
T  28219061 atggaatggagtgtgatggaacccattccatccaatacc 28219099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 361 - 440
Target Start/End: Original strand, 6476770 - 6476849
Alignment:
Q  361 gctatgtttggattggtagagagtggtggaatggaatagaatgaagtgggaaagattcacattctattgtttgattttgt 440  Q
    ||||||||||||||| | ||||||||||||||||||| |||||  |||||| |||  ||||||| ||||||||| |||||    
T  6476770 gctatgtttggattgatggagagtggtggaatggaatggaatggggtgggatagagccacattccattgtttgaatttgt 6476849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 459 - 499
Target Start/End: Original strand, 44246372 - 44246412
Alignment:
Q  459 gaatggaatggagtgtaatggaactcattccatccaatacc 499  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  44246372 gaatggaatggagtgtgatggaactcattccatccaatacc 44246412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 499
Target Start/End: Complemental strand, 7444853 - 7444725
Alignment:
Q  365 tgtttggattggtagagagtggtggaatggaatagaatgaagtgggaaagattcacattctattgtttgattttgtnnnnnnnnnnnnggaatagaatgg 464  Q
    ||||||||||| | ||||||| ||||||||||| ||||| ||||||| | || ||||||| |||||||| |||| |             |||| ||||||    
T  7444853 tgtttggattgatggagagtgatggaatggaatggaatggagtgggatatatccacattccattgtttggttttctaaaaaat------gaatggaatgg 7444760  T
Q  465 aatggagtgtaatggaactcattccatccaatacc 499  Q
    |||||||||| ||||||| ||||||||||||||||    
T  7444759 aatggagtgtgatggaacccattccatccaatacc 7444725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 453 - 499
Target Start/End: Original strand, 10354290 - 10354336
Alignment:
Q  453 ggaatagaatggaatggagtgtaatggaactcattccatccaatacc 499  Q
    ||||| |||||||||||||||  ||| ||||||||||||||||||||    
T  10354290 ggaatggaatggaatggagtgcgatgaaactcattccatccaatacc 10354336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 459 - 499
Target Start/End: Complemental strand, 1499310 - 1499270
Alignment:
Q  459 gaatggaatggagtgtaatggaactcattccatccaatacc 499  Q
    |||||||||| ||||| |||||| |||||||||||||||||    
T  1499310 gaatggaatgcagtgtgatggaattcattccatccaatacc 1499270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 10354209 - 10354245
Alignment:
Q  361 gctatgtttggattggtagagagtggtggaatggaat 397  Q
    ||||||||||||||| | |||||||||||||||||||    
T  10354209 gctatgtttggattgatggagagtggtggaatggaat 10354245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 361 - 496
Target Start/End: Complemental strand, 16302887 - 16302758
Alignment:
Q  361 gctatgtttggattggtagagagtggtggaatggaatagaatgaagtgggaaagattcacattctattgtttgattttgtnnnnnnnnnnnnggaataga 460  Q
    ||||||||||||||||| |  |||||||||||||||| ||||| ||||||| | |  || |||| |||||||| ||||||            ||||| ||    
T  16302887 gctatgtttggattggtggcaagtggtggaatggaatggaatggagtgggataaaaccatattccattgtttggttttgtaaaaaa------ggaatgga 16302794  T
Q  461 atggaatggagtgtaatggaactcattccatccaat 496  Q
    |||||||||||||| |||||||||||||||||||||    
T  16302793 atggaatggagtgtgatggaactcattccatccaat 16302758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 453 - 499
Target Start/End: Original strand, 48046433 - 48046479
Alignment:
Q  453 ggaatagaatggaatggagtgtaatggaactcattccatccaatacc 499  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  48046433 ggaatggaatggaatggagtgtgatggaactcattccatccaatacc 48046479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 454 - 499
Target Start/End: Original strand, 42365918 - 42365963
Alignment:
Q  454 gaatagaatggaatggagtgtaatggaactcattccatccaatacc 499  Q
    |||| |||||||||||||||| ||||||| ||||||||||||||||    
T  42365918 gaatggaatggaatggagtgtgatggaacccattccatccaatacc 42365963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 459 - 499
Target Start/End: Original strand, 15581607 - 15581647
Alignment:
Q  459 gaatggaatggagtgtaatggaactcattccatccaatacc 499  Q
    |||||||||||||||| ||||||| ||||||||||||||||    
T  15581607 gaatggaatggagtgtgatggaacccattccatccaatacc 15581647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 459 - 499
Target Start/End: Original strand, 42934260 - 42934300
Alignment:
Q  459 gaatggaatggagtgtaatggaactcattccatccaatacc 499  Q
    |||||||||||||||| ||||||| ||||||||||||||||    
T  42934260 gaatggaatggagtgtgatggaacccattccatccaatacc 42934300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 400
Target Start/End: Original strand, 7741059 - 7741098
Alignment:
Q  361 gctatgtttggattggtagagagtggtggaatggaataga 400  Q
    ||||||||||||||| | ||||||||||||||||||||||    
T  7741059 gctatgtttggattgatggagagtggtggaatggaataga 7741098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 408
Target Start/End: Original strand, 48046406 - 48046453
Alignment:
Q  361 gctatgtttggattggtagagagtggtggaatggaatagaatgaagtg 408  Q
    ||||||||||||||| | ||||||||||||||||||| ||||| ||||    
T  48046406 gctatgtttggattgatggagagtggtggaatggaatggaatggagtg 48046453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 453 - 499
Target Start/End: Complemental strand, 50678229 - 50678183
Alignment:
Q  453 ggaatagaatggaatggagtgtaatggaactcattccatccaatacc 499  Q
    ||||| |||||||||||||||| ||||||| ||||| ||||||||||    
T  50678229 ggaatggaatggaatggagtgtgatggaacccattctatccaatacc 50678183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 499
Target Start/End: Original strand, 49764933 - 49764978
Alignment:
Q  454 gaatagaatggaatggagtgtaatggaactcattccatccaatacc 499  Q
    |||||| |||||||||||| | |||||||||||| |||||||||||    
T  49764933 gaataggatggaatggagtatgatggaactcatttcatccaatacc 49764978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 459 - 511
Target Start/End: Original strand, 7741146 - 7741198
Alignment:
Q  459 gaatggaatggagtgtaatggaactcattccatccaatacccacctatttaac 511  Q
    ||||||||| |||||| ||||||| |||||| ||||||||||| | |||||||    
T  7741146 gaatggaatagagtgtgatggaacccattccttccaatacccatccatttaac 7741198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 459 - 499
Target Start/End: Original strand, 34969816 - 34969856
Alignment:
Q  459 gaatggaatggagtgtaatggaactcattccatccaatacc 499  Q
    |||||||||| ||||| ||||||| ||||||||||||||||    
T  34969816 gaatggaatgaagtgtgatggaacccattccatccaatacc 34969856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 454 - 499
Target Start/End: Original strand, 3121264 - 3121309
Alignment:
Q  454 gaatagaatggaatggagtgtaatggaactcattccatccaatacc 499  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||    
T  3121264 gaatggaatggaatggagtgtgatggaactcattccatccaatacc 3121309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 454 - 499
Target Start/End: Original strand, 46944082 - 46944127
Alignment:
Q  454 gaatagaatggaatggagtgtaatggaactcattccatccaatacc 499  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||    
T  46944082 gaatggaatggaatggagtgtgatggaactcattccatccaatacc 46944127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 459 - 499
Target Start/End: Original strand, 22405077 - 22405117
Alignment:
Q  459 gaatggaatggagtgtaatggaactcattccatccaatacc 499  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  22405077 gaatggaatggagtgtgatggaactcattccatccaatacc 22405117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 361 - 440
Target Start/End: Complemental strand, 21263763 - 21263684
Alignment:
Q  361 gctatgtttggattggtagagagtggtggaatggaatagaatgaagtgggaaagattcacattctattgtttgattttgt 440  Q
    ||||||||||||||||| | | ||||||||||||||| ||||| |||||||  ||  ||||||| |||||||| ||||||    
T  21263763 gctatgtttggattggtggtgtgtggtggaatggaatggaatggagtgggatggagccacattccattgtttggttttgt 21263684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 459 - 499
Target Start/End: Complemental strand, 4292728 - 4292688
Alignment:
Q  459 gaatggaatggagtgtaatggaactcattccatccaatacc 499  Q
    ||||||||||| |||| ||||||||||||||||||||||||    
T  4292728 gaatggaatggtgtgtgatggaactcattccatccaatacc 4292688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 459 - 499
Target Start/End: Complemental strand, 35033905 - 35033865
Alignment:
Q  459 gaatggaatggagtgtaatggaactcattccatccaatacc 499  Q
    |||||||||||| ||| ||||||||||||||||||||||||    
T  35033905 gaatggaatggaatgtgatggaactcattccatccaatacc 35033865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 403
Target Start/End: Complemental strand, 35034002 - 35033955
Alignment:
Q  356 ttaaagctatgtttggattggtagagagtggtggaatggaatagaatg 403  Q
    |||| ||||||||||||||| | ||||||||||||||||||| |||||    
T  35034002 ttaaggctatgtttggattgatggagagtggtggaatggaatggaatg 35033955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 453 - 499
Target Start/End: Original strand, 35292080 - 35292126
Alignment:
Q  453 ggaatagaatggaatggagtgtaatggaactcattccatccaatacc 499  Q
    ||||| |||||||||||||||| ||| ||||||||| ||||||||||    
T  35292080 ggaatggaatggaatggagtgtgatgtaactcattcaatccaatacc 35292126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 499
Target Start/End: Original strand, 50859210 - 50859248
Alignment:
Q  461 atggaatggagtgtaatggaactcattccatccaatacc 499  Q
    |||||||||||||| |||||| |||||||||||||||||    
T  50859210 atggaatggagtgtgatggaattcattccatccaatacc 50859248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 499
Target Start/End: Original strand, 31227734 - 31227779
Alignment:
Q  454 gaatagaatggaatggagtgtaatggaactcattccatccaatacc 499  Q
    |||| |||||||||| ||||| |||||| |||||||||||||||||    
T  31227734 gaatggaatggaatgaagtgtgatggaaatcattccatccaatacc 31227779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 495
Target Start/End: Complemental strand, 41223755 - 41223714
Alignment:
Q  454 gaatagaatggaatggagtgtaatggaactcattccatccaa 495  Q
    |||| |||||||||||||||| ||||||| ||||||||||||    
T  41223755 gaatggaatggaatggagtgtgatggaacccattccatccaa 41223714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 499
Target Start/End: Original strand, 48084718 - 48084763
Alignment:
Q  454 gaatagaatggaatggagtgtaatggaactcattccatccaatacc 499  Q
    |||| |||||||||||||| | |||||||||||| |||||||||||    
T  48084718 gaattgaatggaatggagtcttatggaactcatttcatccaatacc 48084763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 3121182 - 3121218
Alignment:
Q  361 gctatgtttggattggtagagagtggtggaatggaat 397  Q
    ||||||||||||||| | |||||||||||||||||||    
T  3121182 gctatgtttggattgatggagagtggtggaatggaat 3121218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 459 - 499
Target Start/End: Complemental strand, 21263671 - 21263631
Alignment:
Q  459 gaatggaatggagtgtaatggaactcattccatccaatacc 499  Q
    |||||| ||||||||| ||||||| ||||||||||||||||    
T  21263671 gaatgggatggagtgtgatggaacccattccatccaatacc 21263631  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 454 - 498
Target Start/End: Original strand, 38679777 - 38679821
Alignment:
Q  454 gaatagaatggaatggagtgtaatggaactcattccatccaatac 498  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||    
T  38679777 gaatagaatggaatggagtgtgatggaactcattccattcaatac 38679821  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 359 - 433
Target Start/End: Complemental strand, 34924924 - 34924850
Alignment:
Q  359 aagctatgtttggattggtagagagtggtggaatggaatagaatgaagtgggaaagattcacattctattgtttg 433  Q
    ||||||||||||||||| | ||||||| ||||||||||| ||||| ||||||| | || ||||| | ||||||||    
T  34924924 aagctatgtttggattgatggagagtgatggaatggaatggaatggagtgggatatatccacatcccattgtttg 34924850  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 361 - 433
Target Start/End: Complemental strand, 14112519 - 14112447
Alignment:
Q  361 gctatgtttggattggtagagagtggtggaatggaatagaatgaagtgggaaagattcacattctattgtttg 433  Q
    ||||||||||||||| | ||||||| ||||||||||| ||||| ||||||| | || ||||| | ||||||||    
T  14112519 gctatgtttggattgatggagagtgatggaatggaatggaatggagtgggatatatccacatcccattgtttg 14112447  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 495
Target Start/End: Complemental strand, 34924835 - 34924794
Alignment:
Q  454 gaatagaatggaatggagtgtaatggaactcattccatccaa 495  Q
    |||| |||||||||||||||| ||||||| ||||||||||||    
T  34924835 gaatggaatggaatggagtgtgatggaacccattccatccaa 34924794  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 499
Target Start/End: Complemental strand, 42025443 - 42025398
Alignment:
Q  454 gaatagaatggaatggagtgtaatggaactcattccatccaatacc 499  Q
    |||| |||| ||||||||||| ||||||| ||||||||||||||||    
T  42025443 gaatggaattgaatggagtgtgatggaacccattccatccaatacc 42025398  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 459 - 499
Target Start/End: Original strand, 30800223 - 30800263
Alignment:
Q  459 gaatggaatggagtgtaatggaactcattccatccaatacc 499  Q
    ||||| ||| |||||| ||||||||||||||||||||||||    
T  30800223 gaatgaaatagagtgtgatggaactcattccatccaatacc 30800263  T

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Target: scaffold0227 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 499
Target Start/End: Complemental strand, 368 - 239
Alignment:
Q  364 atgtttggattggtagagagtggtggaatggaatagaatgaagtgggaaagattcacattctattgtttgattttgtnnnnnnnnnnnnggaatagaatg 463  Q
    |||||||||||||| | ||||||||||||||||| ||||  |||||||  ||  ||||||| |||||||| ||||||            || || |||||    
T  368 atgtttggattggtggtgagtggtggaatggaatggaattgagtgggatggagccacattccattgtttggttttgtaaaaat------gggatggaatg 275  T
Q  464 gaatggagtgtaatggaactcattccatccaatacc 499  Q
    ||||||||||| ||||||| ||||||||||||||||    
T  274 gaatggagtgtgatggaacccattccatccaatacc 239  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 359 - 408
Target Start/End: Original strand, 29644160 - 29644209
Alignment:
Q  359 aagctatgtttggattggtagagagtggtggaatggaatagaatgaagtg 408  Q
    |||||||||||||| || ||||||||| ||||||||||| ||||||||||    
T  29644160 aagctatgtttggactgatagagagtgttggaatggaatggaatgaagtg 29644209  T

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Target: scaffold0224 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 459 - 499
Target Start/End: Complemental strand, 12511 - 12471
Alignment:
Q  459 gaatggaatggagtgtaatggaactcattccatccaatacc 499  Q
    |||||||||||||||| ||||||| ||||||||||||||||    
T  12511 gaatggaatggagtgtgatggaacccattccatccaatacc 12471  T

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Target: scaffold0110 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 459 - 499
Target Start/End: Complemental strand, 38661 - 38621
Alignment:
Q  459 gaatggaatggagtgtaatggaactcattccatccaatacc 499  Q
    |||||||||||||||| ||||||| ||||||||||||||||    
T  38661 gaatggaatggagtgtgatggaacccattccatccaatacc 38621  T

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Target: scaffold0039 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 433
Target Start/End: Original strand, 56859 - 56937
Alignment:
Q  355 cttaaagctatgtttggattggtagagagtggtggaatggaatagaatgaagtgggaaagattcacattctattgtttg 433  Q
    ||||| ||||||||||||||| | ||||||| ||||| ||||| ||||| ||||||| | || ||||| | ||||||||    
T  56859 cttaaggctatgtttggattgatggagagtgatggaagggaatggaatggagtgggatatatccacatcccattgtttg 56937  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 403
Target Start/End: Original strand, 19625367 - 19625408
Alignment:
Q  362 ctatgtttggattggtagagagtggtggaatggaatagaatg 403  Q
    |||||||||||||| | ||||||||||||||||||| |||||    
T  19625367 ctatgtttggattgatggagagtggtggaatggaatggaatg 19625408  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 459 - 499
Target Start/End: Original strand, 19625458 - 19625498
Alignment:
Q  459 gaatggaatggagtgtaatggaactcattccatccaatacc 499  Q
    |||||||||||| ||| |||||||| |||||||||||||||    
T  19625458 gaatggaatggaatgtgatggaactaattccatccaatacc 19625498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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