View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21233_high_16 (Length: 451)
Name: NF21233_high_16
Description: NF21233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21233_high_16 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 11 - 432
Target Start/End: Complemental strand, 3653355 - 3652934
Alignment:
| Q |
11 |
cacagatcaaataacaaattcatcatttgtttttaagtctctaaacttgaatgaaggcattcaacccaatgttgatgtgttttactttgagcttgagtgc |
110 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3653355 |
cacagatcaaataacaaattcatcctttgtttttaagtctctaaacttgaatgaaggcattcaacccaatgttgatgtgttttactttgagcttgagtgc |
3653256 |
T |
|
| Q |
111 |
ctcagttacaataacatcaaagggtgagagatgtttagaataaatactccagagcaaaaatgtatctaaaacaaacaattcaatctataaatactaagaa |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3653255 |
ctcagttacaataacatcaaagggtgagagatgtttagaataaatacaccagagcaaaaatgtatctaaaacaaacaattcaatctataaatactaagaa |
3653156 |
T |
|
| Q |
211 |
taaagatggttgttaaatgttcacccaaaaatagacgattgttgaatgaaaatgcaccacatacaatgtttacaaaaacatgttcacaaaaacatgttct |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3653155 |
taaagatggttgttaaatgttcacccaaaaatagacgattgttgaatgaaaatgcaccacatacaatgtttacaaaaacatgttcacaaaaacatgttct |
3653056 |
T |
|
| Q |
311 |
tgttcattataaataagagtcttcattttctctaaaactcttattgagggttactaattccaaattaaaatcaggttcattatttcccactctttgtatt |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3653055 |
tgttcattataaataagagtcttcattttctctaaaactcttattgagggttactgattccaaattaaaatcaggttcattatttcccactctttgtatt |
3652956 |
T |
|
| Q |
411 |
attactaattttggagttatag |
432 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
3652955 |
attactaattttggagttatag |
3652934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 11 - 417
Target Start/End: Original strand, 33051882 - 33052271
Alignment:
| Q |
11 |
cacagatcaaataacaaattcatcatttgtttttaagtctctaaacttgaatgaaggcattcaacccaatgttgatgtgttttactttgagcttgagtgc |
110 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||| |
|
|
| T |
33051882 |
cacatatcaaataacaaattcatcctttgttttgaagtctctaaacttgaatgaaggcattcaacccaatgttgatgtgtttcactttgaacttatgtgt |
33051981 |
T |
|
| Q |
111 |
ctcagttacaataacatcaaagggtgagagatgtttagaataaatactccagagcaaaaatgtatctaaaacaaacaattcaatctataaatactaagaa |
210 |
Q |
| |
|
|| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
33051982 |
ctgagttacaa---catcaaagggtgagagatgtttagaataaatacaccagagcaaaaatgtacctaaaacaaacaattcaattcataaatactaagaa |
33052078 |
T |
|
| Q |
211 |
taaagatggttgttaaatgttcacccaaaaatagacgattgttgaatgaaaatgcaccacatacaatgtttacaaaaacatgttcacaaaaacatgttct |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
33052079 |
taaagatggttgttaaatgttcacccaaaaatagatgattgttgaatgaaaatgcaccacatacagtgttt--------------acaaaaacatgttct |
33052164 |
T |
|
| Q |
311 |
tgttcattataaataagagtcttcattttctctaaaactcttattgagggttactaattccaaattaaaatcaggttcattatttcccactctttgtatt |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
33052165 |
tgttcattataaataagagtcttcattttctctaaaactcttattgagggttactaattccaaattaaaatcaggttcattatttcccaatctttgtatt |
33052264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 44 - 192
Target Start/End: Complemental strand, 32279724 - 32279579
Alignment:
| Q |
44 |
taagtctctaaacttga-atgaaggcattcaacccaatgttgatgtgttttactttgagcttgagtgcctcagttacaataacatcaaagggtgagagat |
142 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| | |||| || |||| |||||||| |||| | |||||||||| ||| ||| |
|
|
| T |
32279724 |
taagtctctaaacttgacatgaaggcattcaacccaatgttgatgtgtctcactt-gaacttgggtgcctcaattacga---catcaaagggagagggat |
32279629 |
T |
|
| Q |
143 |
gtttagaataaatactccagagcaaaaatgtatctaaaacaaacaattca |
192 |
Q |
| |
|
|||||||||||||| ||| ||||||| |||| ||||| ||||||||||| |
|
|
| T |
32279628 |
gtttagaataaataaaccaaagcaaaagtgtacctaaagcaaacaattca |
32279579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 413
Target Start/End: Complemental strand, 9046030 - 9045990
Alignment:
| Q |
373 |
aattaaaatcaggttcattatttcccactctttgtattatt |
413 |
Q |
| |
|
||||||||||||||||| ||||| ||| ||||||||||||| |
|
|
| T |
9046030 |
aattaaaatcaggttcaatattttccagtctttgtattatt |
9045990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University