View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21233_high_17 (Length: 443)
Name: NF21233_high_17
Description: NF21233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21233_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 19 - 438
Target Start/End: Original strand, 6083263 - 6083682
Alignment:
| Q |
19 |
ctatcagagaaaagtaaaaggcttgctaaaactgtgattgaaaattcttatcttaacaaatctattatcgcgaaagacaatttgattgatgatctgagaa |
118 |
Q |
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| T |
6083263 |
ctatcagagaaaagtaaaaggcttgctaaaactgtgattgaaaattcttatcttaacaaatctattatcgcgaaagacaatttgattgatgatctgagaa |
6083362 |
T |
|
| Q |
119 |
gacaattgaatcaagcagacgtggatcgtaatgcattgatgattggattagagtctgttgagaaggataatacttctctgatgtatgaggctcgagtgct |
218 |
Q |
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| T |
6083363 |
gacaattgaatcaagcagacgtggatcgtaatgcattgatgattggattagagtctgttgagaaggataatacttctctgatgtatgaggctcgagtgct |
6083462 |
T |
|
| Q |
219 |
tcaaaaggaacttgatattcgaaatgaagtccaattttcaagagtaatgctttcgcaaacagcgtcaaaactgttgcaacttgaatctgagattgattcc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
6083463 |
tcaaaaggaacttgatattcgaaatgaagtccaattttcaagagtaatgctttcgcaaacagcgtcaaaactgttgcaacttgagtctgagattgattcc |
6083562 |
T |
|
| Q |
319 |
aaaaaccaagtagcatcggagcagcctagaagtcatgttgcattgcaagagttatctttggcatcaatgtcttacattggcagtgatgacaatgttagct |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6083563 |
aaaaaccaagtagcatcggagcagcctagaagtcatgttgcattgcaagagttatctttggcatcaatgtcttacattggcagtgatgacaatgttagct |
6083662 |
T |
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| Q |
419 |
gtggggagtcctttgcttct |
438 |
Q |
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| T |
6083663 |
gcggggagtccttggcttct |
6083682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 100 - 247
Target Start/End: Complemental strand, 39108062 - 39107915
Alignment:
| Q |
100 |
ttgattgatgatctgagaagacaattgaatcaagcagacgtggatcgtaatgcattgatgattggattagagtctgttgagaaggataatacttctctga |
199 |
Q |
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|||||||| ||||||| ||||||||||| |||||| || | |||| || |||| ||||| || |||||||||| |||||| |||||| ||||||||| |
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| T |
39108062 |
ttgattgaggatctgaaaagacaattgactcaagctgaggcagatcatagtgcactgatggttagattagagtccactgagaaagataatgcttctctga |
39107963 |
T |
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| Q |
200 |
tgtatgaggctcgagtgcttcaaaaggaacttgatattcgaaatgaag |
247 |
Q |
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| T |
39107962 |
catatgaggtccgagtacttgaaaaggagctggagatccgaaatgaag |
39107915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 373 - 421
Target Start/End: Complemental strand, 39107438 - 39107390
Alignment:
| Q |
373 |
tctttggcatcaatgtcttacattggcagtgatgacaatgttagctgtg |
421 |
Q |
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||||||||||||| |||| | ||||||||||||||||| |||||||||| |
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| T |
39107438 |
tctttggcatcaacgtctgatattggcagtgatgacaaggttagctgtg |
39107390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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