View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21233_high_18 (Length: 415)
Name: NF21233_high_18
Description: NF21233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21233_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 15 - 405
Target Start/End: Complemental strand, 37615633 - 37615240
Alignment:
| Q |
15 |
aaaagctaccttctcattgagagcaatggacttgatcgataatttactatgcataatccttgaacttgatttttgtagagataagatgcgtgattgataa |
114 |
Q |
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| T |
37615633 |
aaaagctaccttctcattgagagcaatggacttgatcgataatttactatgcataatccttgaacttgatttttgtagagataagatgcgtgattgataa |
37615534 |
T |
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| Q |
115 |
gtagaagttctaaaattacaacgagcaaatgtgcttgtgagatatgaaactctaagttcagtaatagccattgtatttgcaagcttatctctttccttct |
214 |
Q |
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| T |
37615533 |
gtagaagttccaaaattacaacgagcaagtgtgcttgtgagatatgaaactctaagttcagtaaaagccattgtatttgcaagcttatgtctttccttct |
37615434 |
T |
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| Q |
215 |
at---gtatgtaataacacaaattggattgcccacttatatagactttctatctagcttacacaattgactggtattttgtaatattatattctaatacc |
311 |
Q |
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| T |
37615433 |
atgtagtatgcgataacacaaattggattgcccacttatatagactttctatgtagcttacataattgactggtattttgtaatattatattctaatacc |
37615334 |
T |
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| Q |
312 |
aaaattctaaacattaa-nnnnnnnnnnacataaccattccacattaatcattttgtttgactaaaagctctatagaaatatcatgcgggttcat |
405 |
Q |
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| T |
37615333 |
aaaattctaaacattaatttttttttttacataaccattccacattaatcattttgtttgact-aaagctctatagaaatatcatgcgggttcat |
37615240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 191
Target Start/End: Complemental strand, 37624142 - 37623972
Alignment:
| Q |
21 |
taccttctcattgagagcaatggacttgatcgataatttactatgcataatccttgaacttgatttttgtagagataagatgcgtgattgataagtagaa |
120 |
Q |
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|||||| |||||||||||| |||| |||||||||| ||||| |||||| | || || ||||||||||||| ||||||| ||||| |||||||| ||| |
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| T |
37624142 |
taccttgtcattgagagcagtggaattgatcgatagtttacgatgcatgaaccctggttttgatttttgtagcaataagatccgtgaatgataagttgaa |
37624043 |
T |
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| Q |
121 |
gttctaaaattacaacgagcaaatgtgcttgtgagatatgaaactctaagttcagtaatagccattgtatt |
191 |
Q |
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| T |
37624042 |
gaccgggaattgcaacatgaaagtgcacttgtgagacatgaaactctaagttcagtaacaaccattgtatt |
37623972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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