View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21233_high_2 (Length: 954)

Name: NF21233_high_2
Description: NF21233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21233_high_2
NF21233_high_2
[»] chr2 (14 HSPs)
chr2 (16-440)||(44475313-44475740)
chr2 (622-837)||(44476167-44476374)
chr2 (19-175)||(44485525-44485681)
chr2 (835-943)||(44476521-44476629)
chr2 (463-541)||(44476026-44476105)
chr2 (177-229)||(7480854-7480906)
chr2 (177-273)||(4026964-4027056)
chr2 (741-826)||(44471698-44471777)
chr2 (19-131)||(44471251-44471363)
chr2 (177-229)||(8832536-8832588)
chr2 (177-229)||(23956219-23956271)
chr2 (177-229)||(38216098-38216150)
chr2 (178-229)||(736043-736094)
chr2 (177-228)||(29774825-29774876)
[»] chr4 (25 HSPs)
chr4 (177-273)||(488339-488431)
chr4 (178-229)||(36254992-36255043)
chr4 (177-265)||(38345777-38345861)
chr4 (177-227)||(8130560-8130610)
chr4 (179-273)||(23335681-23335771)
chr4 (177-229)||(12495599-12495651)
chr4 (177-229)||(17222908-17222960)
chr4 (177-229)||(29877718-29877770)
chr4 (177-228)||(34633470-34633521)
chr4 (177-228)||(43699404-43699455)
chr4 (177-226)||(14987555-14987604)
chr4 (188-229)||(32628857-32628898)
chr4 (177-229)||(11256616-11256668)
chr4 (177-229)||(18424233-18424285)
chr4 (177-229)||(22273859-22273911)
chr4 (177-229)||(23297514-23297566)
chr4 (177-229)||(34526292-34526344)
chr4 (177-229)||(36740983-36741035)
chr4 (177-229)||(48687013-48687065)
chr4 (177-229)||(48721899-48721951)
chr4 (177-228)||(24101895-24101946)
chr4 (182-229)||(29615439-29615486)
chr4 (181-228)||(33534008-33534055)
chr4 (177-273)||(41228942-41229034)
chr4 (180-229)||(15184625-15184674)
[»] chr6 (8 HSPs)
chr6 (177-257)||(32675844-32675920)
chr6 (177-229)||(9202354-9202406)
chr6 (177-214)||(7267876-7267913)
chr6 (177-229)||(2255813-2255865)
chr6 (177-273)||(6758666-6758759)
chr6 (177-216)||(9201676-9201715)
chr6 (177-227)||(2040136-2040186)
chr6 (177-231)||(10755238-10755292)
[»] chr7 (12 HSPs)
chr7 (177-229)||(46744032-46744084)
chr7 (177-227)||(43818833-43818883)
chr7 (177-273)||(44613428-44613520)
chr7 (177-227)||(47654369-47654419)
chr7 (177-229)||(33288030-33288082)
chr7 (177-216)||(33204926-33204965)
chr7 (177-227)||(22032843-22032893)
chr7 (178-228)||(23356447-23356497)
chr7 (179-229)||(48021605-48021655)
chr7 (177-223)||(49104323-49104369)
chr7 (177-222)||(30181636-30181681)
chr7 (177-226)||(38372640-38372689)
[»] chr5 (25 HSPs)
chr5 (188-273)||(1576669-1576750)
chr5 (188-273)||(1608065-1608146)
chr5 (177-273)||(41419540-41419632)
chr5 (177-227)||(29659141-29659191)
chr5 (177-229)||(1943074-1943126)
chr5 (177-229)||(11912057-11912109)
chr5 (177-229)||(24030293-24030345)
chr5 (177-225)||(28357435-28357483)
chr5 (177-229)||(43268591-43268643)
chr5 (177-273)||(28625519-28625611)
chr5 (179-228)||(42852101-42852150)
chr5 (188-228)||(6150872-6150912)
chr5 (177-229)||(7364264-7364316)
chr5 (177-229)||(11163237-11163289)
chr5 (179-227)||(23087736-23087784)
chr5 (177-225)||(39154716-39154764)
chr5 (177-225)||(41059744-41059792)
chr5 (177-224)||(10274384-10274431)
chr5 (177-216)||(13060557-13060596)
chr5 (177-228)||(29922144-29922195)
chr5 (177-224)||(35083323-35083370)
chr5 (177-227)||(9477417-9477467)
chr5 (187-229)||(10537192-10537234)
chr5 (177-229)||(41125752-41125805)
chr5 (179-216)||(43319095-43319132)
[»] chr3 (12 HSPs)
chr3 (177-229)||(34707668-34707720)
chr3 (177-263)||(20685834-20685916)
chr3 (177-229)||(1516053-1516105)
chr3 (177-229)||(42956134-42956186)
chr3 (177-226)||(40581031-40581080)
chr3 (188-273)||(3870192-3870273)
chr3 (177-229)||(29830594-29830646)
chr3 (177-229)||(37778212-37778264)
chr3 (177-229)||(53787707-53787759)
chr3 (177-216)||(10449069-10449108)
chr3 (177-273)||(22809148-22809240)
chr3 (177-227)||(52895360-52895410)
[»] chr1 (15 HSPs)
chr1 (176-273)||(3069808-3069901)
chr1 (177-273)||(48819338-48819430)
chr1 (180-273)||(6337714-6337803)
chr1 (177-229)||(22593362-22593414)
chr1 (177-229)||(28690083-28690135)
chr1 (177-273)||(15515302-15515394)
chr1 (177-229)||(14460996-14461048)
chr1 (177-229)||(16888921-16888973)
chr1 (177-229)||(41003466-41003518)
chr1 (177-229)||(41130073-41130125)
chr1 (177-228)||(16708879-16708930)
chr1 (179-229)||(12871432-12871482)
chr1 (177-229)||(391254-391307)
chr1 (177-222)||(9572739-9572784)
chr1 (177-226)||(38781160-38781209)
[»] scaffold0157 (1 HSPs)
scaffold0157 (177-229)||(24826-24878)
[»] chr8 (12 HSPs)
chr8 (177-273)||(32975726-32975818)
chr8 (180-260)||(14262378-14262454)
chr8 (177-226)||(10213777-10213826)
chr8 (177-229)||(8752885-8752937)
chr8 (188-273)||(10298892-10298973)
chr8 (177-229)||(25333656-25333708)
chr8 (177-229)||(25465802-25465854)
chr8 (177-221)||(28280796-28280840)
chr8 (177-229)||(32131519-32131571)
chr8 (177-229)||(41145351-41145403)
chr8 (177-216)||(16926683-16926722)
chr8 (177-226)||(32212970-32213019)
[»] scaffold0015 (1 HSPs)
scaffold0015 (177-227)||(48583-48633)


Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 16 - 440
Target Start/End: Original strand, 44475313 - 44475740
Alignment:
Q  16 caaattgtataggcaaaatctgcagtatgttcttcgttaggtttggaacagatggttggataccagagtctgccaccttatacaacgatggctaccctcc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44475313 caaattgtataggcaaaatctgcagtatgttcttcgttaggtttggaacagatggttggataccagagtctgccaccttatacaacgatggctaccctcc 44475412  T
Q  116 tgtaacattcaacttcaactacttaattcctttcggcgttccctctggcatctataattgcaataaataagtttttatgttaattcgtaagttctcacta 215  Q
    | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44475413 tataacattcaacttcaactacttgattcctttcggcgttccctctggcatctataattgcaataaataagtttttatgttaattcgtaagttctcacta 44475512  T
Q  216 ataaaaattgtatcattgatcagaagttattttttcataaactacattgataagctta------atgtatct--cgattcatcaaagaatataatgatag 307  Q
    || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||      || |||||  |||||||||||||     ||||||||    
T  44475513 atgaaaattgtatcattgatcagaagttgttttttcataaactacattgataagcttatgaatcatttatctcgcgattcatcaaag-----aatgatag 44475607  T
Q  308 ctaatgagtttctacatttatttggcgtcaaataacacatattgctttcgataaaccgatgacaatgttgatttgctgtannnnnnnctcaatcaaacca 407  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||    
T  44475608 ctaatgagtttctgcatttatttagcgtcaaataacacatattgctttcgataaaccgatgacaatgttgatttgctgtatttttttctcaatcaaacca 44475707  T
Q  408 ttcagcccgtgtaattatttttcttcaactttg 440  Q
    |||||||||||||||||||||||||||||||||    
T  44475708 ttcagcccgtgtaattatttttcttcaactttg 44475740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 155; E-Value: 9e-82
Query Start/End: Original strand, 622 - 837
Target Start/End: Original strand, 44476167 - 44476374
Alignment:
Q  622 ttaattgctgtttgtttttaccagctaataactnnnnnnntaaacatatttctttataaaaaatgaatgatcaagttaaattaatatcttatttttaatt 721  Q
    |||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44476167 ttaattgctgtttgtttttaccagctaataactaagaaa-taaacatatttctttataaaaaatgaatgatcaagttaaattaatatcttatttttaatt 44476265  T
Q  722 atgagattaattaatatttgtctcttacactacacatatggacactaattttagttaattgcatagaactagaagaatatttttaatataacaaatttta 821  Q
    |||||    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||    
T  44476266 atgag----attaatatttgtctcttaaactacacatatggacactaattttagttaattgcatagaact---agaatatttttaatataacaaatttta 44476358  T
Q  822 gtatcatctctgttct 837  Q
    ||||||||||||||||    
T  44476359 gtatcatctctgttct 44476374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 19 - 175
Target Start/End: Original strand, 44485525 - 44485681
Alignment:
Q  19 attgtataggcaaaatctgcagtatgttcttcgttaggtttggaacagatggttggataccagagtctgccaccttatacaacgatggctaccctcctgt 118  Q
    ||||||||||||||||||||| |||| |||| ||||||||||||||| |||||||||| ||||||||||||||||||||| ||| || ||||||||||||    
T  44485525 attgtataggcaaaatctgcaatatgatctttgttaggtttggaacaaatggttggatgccagagtctgccaccttatactacggtgactaccctcctgt 44485624  T
Q  119 aacattcaacttcaactacttaattcctttcggcgttccctctggcatctataattg 175  Q
     |||||||||||||||||||| |||||||  || |||||||| || ||| |||||||    
T  44485625 tacattcaacttcaactacttcattccttcgggtgttccctccggtatcaataattg 44485681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 835 - 943
Target Start/End: Original strand, 44476521 - 44476629
Alignment:
Q  835 tcttctcgtatcgtgctataccttcatcaagaaaatacaactaattatacttgtttaacnnnnnnnnttggtcggaccatacattagtcagaaatgagtt 934  Q
    |||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||        ||||||||||||||||||||||||||| |||||    
T  44476521 tcttctcacatcgtgctataccttcatcaaaaaaatacaactaattatacttgtttaacaaaaaaaattggtcggaccatacattagtcagaaacgagtt 44476620  T
Q  935 ttggatatt 943  Q
    |||||||||    
T  44476621 ttggatatt 44476629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 463 - 541
Target Start/End: Original strand, 44476026 - 44476105
Alignment:
Q  463 cttcaacttcaactcgttcattatattcctttaggt--tccctctggcgccgattattgtcaaaggtcaaatcttcaataa 541  Q
    ||||||||||||||||||| ||  ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  44476026 cttcaacttcaactcgttcgttc-attcctttaggtgttccctctggcgccgattattgtcaaaggtcaaatcttcaataa 44476105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 7480854 - 7480906
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 229  Q
    ||||||||||||||||||||||||| |||||||| |||||| |||||||||||    
T  7480854 aataaataagtttttatgttaattcataagttctgactaatgaaaattgtatc 7480906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 273
Target Start/End: Complemental strand, 4027056 - 4026964
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatcattgatcagaagttattttttcataaactacattgataagctta 273  Q
    |||||||||| | |||||||||||| |||||||||||||| ||||||||||||     ||| ||| | |||||||||||||||| |||| |||||||    
T  4027056 aataaataagctattatgttaattcataagttctcactaacaaaaattgtatc----ttcataagctgttttttcataaactaccttgacaagctta 4026964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 741 - 826
Target Start/End: Original strand, 44471698 - 44471777
Alignment:
Q  741 gtctcttacactacacatatggacactaattttagttaattgcatagaactagaagaatatttttaatataacaaattttagtatc 826  Q
    ||||||||||||||| |||  || |||||||||||||||||||||||||||| || |    ||||||||||||||||| |||||||    
T  44471698 gtctcttacactacatata--gagactaattttagttaattgcatagaactataata----ttttaatataacaaattctagtatc 44471777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 44471251 - 44471363
Alignment:
Q  19 attgtataggcaaaatctgcagtatgttcttcgttaggtttggaacagatggttggataccagagtctgccaccttatacaacgatggctaccctcctgt 118  Q
    |||||||||| |||||||||| ||||  ||| |||||  |||||| ||||||||||||||||||| | |||| | ||||| ||  || |||||||||| |    
T  44471251 attgtataggaaaaatctgcaatatgcactttgttagtgttggaagagatggttggataccagagaccgccatcgtataccaccgtgactaccctcctat 44471350  T
Q  119 aacattcaacttc 131  Q
     || |||||||||    
T  44471351 caccttcaacttc 44471363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 8832588 - 8832536
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 229  Q
    |||||||||| |||||||||||||| |||||| |||||||  |||||||||||    
T  8832588 aataaataagcttttatgttaattcataagttttcactaacgaaaattgtatc 8832536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 23956219 - 23956271
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 229  Q
    ||||||||||||||||||||||||  |||||||||| |||  |||||||||||    
T  23956219 aataaataagtttttatgttaatttataagttctcattaacgaaaattgtatc 23956271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 38216150 - 38216098
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 229  Q
    |||||||||| ||||||||||| || ||||||||||||||  |||||||||||    
T  38216150 aataaataagcttttatgttaactcataagttctcactaacgaaaattgtatc 38216098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 229
Target Start/End: Complemental strand, 736094 - 736043
Alignment:
Q  178 ataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 229  Q
    |||||||||||||||||||||||  |||||||||| ||| ||||||| ||||    
T  736094 ataaataagtttttatgttaatttataagttctcaataacaaaaattatatc 736043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 228
Target Start/End: Complemental strand, 29774876 - 29774825
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtat 228  Q
    |||||||||| ||||| |||||||| ||||||||||||||  ||||||||||    
T  29774876 aataaataagcttttacgttaattcataagttctcactaacgaaaattgtat 29774825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 6e-18; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 177 - 273
Target Start/End: Original strand, 488339 - 488431
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatcattgatcagaagttattttttcataaactacattgataagctta 273  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||    | |||  ||||||||||||||||| |||| |||||||    
T  488339 aataaataagcttttatgttaattcataagttctcactaataaaaattgtatcttt----acaagcaattttttcataaactaccttgacaagctta 488431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 229
Target Start/End: Original strand, 36254992 - 36255043
Alignment:
Q  178 ataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 229  Q
    ||||||||| |||||||||||||| ||||||||||||||| |||||||||||    
T  36254992 ataaataagcttttatgttaattcataagttctcactaattaaaattgtatc 36255043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 265
Target Start/End: Original strand, 38345777 - 38345861
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatcattgatcagaagttattttttcataaactacattga 265  Q
    |||||||||| |||||||||||||| ||||||||  |||||||||||||||||     ||| ||||| |||||||||||||||| ||||    
T  38345777 aataaataagcttttatgttaattcataagttctggctaataaaaattgtatc----ttcataagttgttttttcataaactactttga 38345861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 8130610 - 8130560
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgta 227  Q
    ||||||||||||||||||||||||| |||||| ||||||| ||||||||||    
T  8130610 aataaataagtttttatgttaattcataagttttcactaacaaaaattgta 8130560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 273
Target Start/End: Complemental strand, 23335771 - 23335681
Alignment:
Q  179 taaataagtttttatgttaattcgtaagttctcactaataaaaattgtatcattgatcagaagttattttttcataaactacattgataagctta 273  Q
    |||| |||||||||||||||||| |||||||||||| || |||||||||||     ||| ||| | |||||||||||||||| |||||| |||||    
T  23335771 taaacaagtttttatgttaattcataagttctcacttatgaaaattgtatc----ttcataagctgttttttcataaactaccttgatatgctta 23335681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 12495599 - 12495651
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 229  Q
    ||||||||||||||||||||||||  ||||||||||||||| || ||||||||    
T  12495599 aataaataagtttttatgttaatttataagttctcactaatgaatattgtatc 12495651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 17222960 - 17222908
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 229  Q
    ||||||||||||||||||||||||| |||||||| |||||  |||||||||||    
T  17222960 aataaataagtttttatgttaattcataagttctaactaacgaaaattgtatc 17222908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 29877770 - 29877718
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 229  Q
    |||| ||||| |||||||||||||| |||||||||||||| ||||||||||||    
T  29877770 aatatataagcttttatgttaattcataagttctcactaacaaaaattgtatc 29877718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 228
Target Start/End: Complemental strand, 34633521 - 34633470
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtat 228  Q
    |||||||||| |||||||||||||| |||||||||||| || ||||||||||    
T  34633521 aataaataagcttttatgttaattcataagttctcacttatgaaaattgtat 34633470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 228
Target Start/End: Original strand, 43699404 - 43699455
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtat 228  Q
    ||||||||||||||||||||||||| ||||||| ||||| | ||||||||||    
T  43699404 aataaataagtttttatgttaattcataagttcccactagtgaaaattgtat 43699455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 14987555 - 14987604
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgt 226  Q
    ||||||||||||||||| ||||||| ||||||||||||||  ||||||||    
T  14987555 aataaataagtttttatattaattcataagttctcactaacgaaaattgt 14987604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 229
Target Start/End: Complemental strand, 32628898 - 32628857
Alignment:
Q  188 ttttatgttaattcgtaagttctcactaataaaaattgtatc 229  Q
    ||||||||||||||||||||||||||| || |||||||||||    
T  32628898 ttttatgttaattcgtaagttctcactgatcaaaattgtatc 32628857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 11256616 - 11256668
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 229  Q
    |||||||||| |||||||||||||| ||||||||| ||||  |||||||||||    
T  11256616 aataaataagcttttatgttaattcataagttctcgctaactaaaattgtatc 11256668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 18424233 - 18424285
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 229  Q
    |||||||||| |||||||||||||| |||||| ||| ||| ||||||||||||    
T  18424233 aataaataagcttttatgttaattcataagttttcaataacaaaaattgtatc 18424285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 22273911 - 22273859
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 229  Q
    |||||||||  |||||||||||||| ||| |||||||||| ||||||||||||    
T  22273911 aataaataaacttttatgttaattcataacttctcactaacaaaaattgtatc 22273859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 23297566 - 23297514
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 229  Q
    |||||||||| ||||||| |||||| ||||||||| |||| ||||||||||||    
T  23297566 aataaataagcttttatgctaattcataagttctcgctaacaaaaattgtatc 23297514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 34526292 - 34526344
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 229  Q
    |||||||||| |||||||||||||| |||||||||||||   |||||||||||    
T  34526292 aataaataagcttttatgttaattcataagttctcactatggaaaattgtatc 34526344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 36741035 - 36740983
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 229  Q
    |||||||||| |||| |||| |||| ||||||||||||||| |||||||||||    
T  36741035 aataaataagcttttgtgttgattcataagttctcactaatgaaaattgtatc 36740983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 48687065 - 48687013
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 229  Q
    |||||||||  || ||||||||||| ||||||||||||||| |||||||||||    
T  48687065 aataaataaacttatatgttaattcataagttctcactaatgaaaattgtatc 48687013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 48721951 - 48721899
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 229  Q
    |||||||||| |||||| ||||||| |||||||||||||| ||||||| ||||    
T  48721951 aataaataagcttttatattaattcataagttctcactaacaaaaattatatc 48721899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 228
Target Start/End: Original strand, 24101895 - 24101946
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtat 228  Q
    ||||||||||||||||||||||||  |||||||||||  | |||||||||||    
T  24101895 aataaataagtttttatgttaatttataagttctcacggacaaaaattgtat 24101946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 229
Target Start/End: Complemental strand, 29615486 - 29615439
Alignment:
Q  182 ataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 229  Q
    ||||| ||||||| |||||| |||||||||||||| ||||||||||||    
T  29615486 ataagcttttatgctaattcttaagttctcactaacaaaaattgtatc 29615439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 33534055 - 33534008
Alignment:
Q  181 aataagtttttatgttaattcgtaagttctcactaataaaaattgtat 228  Q
    ||||||||||||||||| ||| ||||||||||||||  ||||||||||    
T  33534055 aataagtttttatgttagttcataagttctcactaacgaaaattgtat 33534008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 273
Target Start/End: Complemental strand, 41229034 - 41228942
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatcattgatcagaagttattttttcataaactacattgataagctta 273  Q
    ||||||| || |||||| ||||||| |||||||| |||||| ||||||||||| || |||   |||| |||||||||||||||| || | |||||||    
T  41229034 aataaattagcttttatattaattcataagttctaactaatgaaaattgtatc-ttcatc---agttgttttttcataaactaccttaacaagctta 41228942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 15184674 - 15184625
Alignment:
Q  180 aaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 229  Q
    |||||||||||||| ||||||  ||||||||||||||  |||||||||||    
T  15184674 aaataagtttttattttaatttataagttctcactaacgaaaattgtatc 15184625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 257
Target Start/End: Original strand, 32675844 - 32675920
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatcattgatcagaagttattttttcataaac 257  Q
    ||||||||||||||||| ||||||| ||||||||||||||| |||||||||||     ||| |||||||||||||||||||    
T  32675844 aataaataagtttttatattaattcataagttctcactaatgaaaattgtatc----ttcataagttattttttcataaac 32675920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 9202354 - 9202406
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 229  Q
    |||||||||| |||||||||||||| |||||| ||||||||||||||||||||    
T  9202354 aataaataagcttttatgttaattcataagttatcactaataaaaattgtatc 9202406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 214
Target Start/End: Complemental strand, 7267913 - 7267876
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcact 214  Q
    |||||||||| |||||||||||||||||||||||||||    
T  7267913 aataaataagcttttatgttaattcgtaagttctcact 7267876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 2255865 - 2255813
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 229  Q
    |||||||||| |||||||||||||| || ||||||||||  ||||||||||||    
T  2255865 aataaataagcttttatgttaattcatatgttctcactaccaaaaattgtatc 2255813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 273
Target Start/End: Complemental strand, 6758759 - 6758666
Alignment:
Q  177 aataaataag-tttttatgttaattcgtaagttctcactaataaaaattgtatcattgatcagaagttattttttcataaactacattgataagctta 273  Q
    |||||||||| ||||||| ||||||| ||||||||||||||  ||| ||||||| |||||   |||||| ||||||||||||||| || | |||||||    
T  6758759 aataaataagctttttatattaattcataagttctcactaacgaaatttgtatc-ttgat---aagttaatttttcataaactaccttaacaagctta 6758666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 216
Target Start/End: Original strand, 9201676 - 9201715
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaa 216  Q
    |||||||||| |||||||||||||| ||||||||||||||    
T  9201676 aataaataagcttttatgttaattcataagttctcactaa 9201715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 2040136 - 2040186
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgta 227  Q
    ||||||||||||||||| ||||||  |||||||| |||||| |||||||||    
T  2040136 aataaataagtttttatattaatttataagttctaactaatgaaaattgta 2040186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 231
Target Start/End: Original strand, 10755238 - 10755292
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatcat 231  Q
    |||||||||| |||||||||||||| |||||||| |||||  |||||||| ||||    
T  10755238 aataaataagcttttatgttaattcataagttcttactaacgaaaattgtttcat 10755292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 46744084 - 46744032
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 229  Q
    |||||||||| |||||||||||||||||||||||||||||  |||||||||||    
T  46744084 aataaataagcttttatgttaattcgtaagttctcactaacgaaaattgtatc 46744032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 43818833 - 43818883
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgta 227  Q
    ||||||||||||||||| ||||||| ||||||||||||||| |||||||||    
T  43818833 aataaataagtttttatcttaattcataagttctcactaatgaaaattgta 43818883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 273
Target Start/End: Original strand, 44613428 - 44613520
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatcattgatcagaagttattttttcataaactacattgataagctta 273  Q
    |||||||||| |||||| ||||||| |||||||| | ||||||||||||||||     ||| ||||| |||||||||||||||| || | |||||||    
T  44613428 aataaataagcttttatattaattcataagttctaattaataaaaattgtatc----gtcataagttgttttttcataaactaccttaacaagctta 44613520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 47654369 - 47654419
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgta 227  Q
    ||||||||||||||||| ||||||| ||||||||||||||  |||||||||    
T  47654369 aataaataagtttttatcttaattcataagttctcactaacgaaaattgta 47654419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 33288030 - 33288082
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 229  Q
    ||||||||||||||||||||||||| |||||| |||||||  |||| ||||||    
T  33288030 aataaataagtttttatgttaattcataagttttcactaacgaaaactgtatc 33288082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 216
Target Start/End: Complemental strand, 33204965 - 33204926
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaa 216  Q
    |||||||||| |||||||||||||| ||||||||||||||    
T  33204965 aataaataagcttttatgttaattcataagttctcactaa 33204926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 22032893 - 22032843
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgta 227  Q
    ||||||||||||||||| ||||||  ||||||||||||||  |||||||||    
T  22032893 aataaataagtttttatcttaatttataagttctcactaacgaaaattgta 22032843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 228
Target Start/End: Original strand, 23356447 - 23356497
Alignment:
Q  178 ataaataagtttttatgttaattcgtaagttctcactaataaaaattgtat 228  Q
    ||||||||| |||||||||||||| || ||||||||||| |||||| ||||    
T  23356447 ataaataagcttttatgttaattcataggttctcactaacaaaaatagtat 23356497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 229
Target Start/End: Original strand, 48021605 - 48021655
Alignment:
Q  179 taaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 229  Q
    ||||||| ||||||| ||||||| |||||| |||||||| |||||||||||    
T  48021605 taaataattttttatattaattcataagttttcactaatgaaaattgtatc 48021655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 49104323 - 49104369
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaat 223  Q
    ||||||||| ||||||||||||||| ||| |||||||| ||||||||    
T  49104323 aataaataaatttttatgttaattcataaattctcactcataaaaat 49104369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 30181681 - 30181636
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaa 222  Q
    |||||||||| |||||||||||||| ||||||| ||||||| ||||    
T  30181681 aataaataagcttttatgttaattcataagttcccactaatgaaaa 30181636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 38372689 - 38372640
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgt 226  Q
    ||||||| || |||||||||||||| ||||||||||||||  ||||||||    
T  38372689 aataaatcagcttttatgttaattcataagttctcactaacgaaaattgt 38372640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 188 - 273
Target Start/End: Complemental strand, 1576750 - 1576669
Alignment:
Q  188 ttttatgttaattcgtaagttctcactaataaaaattgtatcattgatcagaagttattttttcataaactacattgataagctta 273  Q
    |||||||||||||| |||||||||||||| ||||||||||||     ||| ||||| ||||| ||||||||||||||| |||||||    
T  1576750 ttttatgttaattcttaagttctcactaacaaaaattgtatc----ttcacaagttgtttttccataaactacattgacaagctta 1576669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 188 - 273
Target Start/End: Original strand, 1608065 - 1608146
Alignment:
Q  188 ttttatgttaattcgtaagttctcactaataaaaattgtatcattgatcagaagttattttttcataaactacattgataagctta 273  Q
    |||||||||||||| |||||||||||||| ||||||||||||     ||| ||||| ||||| ||||||||||||||| |||||||    
T  1608065 ttttatgttaattcttaagttctcactaacaaaaattgtatc----ttcacaagttgtttttccataaactacattgacaagctta 1608146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 273
Target Start/End: Complemental strand, 41419632 - 41419540
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatcattgatcagaagttattttttcataaactacattgataagctta 273  Q
    ||||||||||||||||||||||||  ||||||||||||||  |||||||||||     ||| ||| | |||||||||||||||| |||| |||||||    
T  41419632 aataaataagtttttatgttaattgataagttctcactaacgaaaattgtatc----ttcataagctgttttttcataaactaccttgacaagctta 41419540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 29659191 - 29659141
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgta 227  Q
    ||||||||||||||||| ||||||| ||||||||||||||| |||||||||    
T  29659191 aataaataagtttttatcttaattcataagttctcactaatgaaaattgta 29659141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 1943126 - 1943074
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 229  Q
    |||||||||| ||||||| |||||| ||||||||||||||| |||||||||||    
T  1943126 aataaataagcttttatgctaattcataagttctcactaatgaaaattgtatc 1943074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 11912057 - 11912109
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 229  Q
    |||||||||| ||| |||||||||| |||||||||||||| ||||||||||||    
T  11912057 aataaataagctttcatgttaattcataagttctcactaacaaaaattgtatc 11912109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 24030345 - 24030293
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 229  Q
    |||||||||| |||||||||||||| ||||||||||||||  |||||||||||    
T  24030345 aataaataagcttttatgttaattcataagttctcactaacgaaaattgtatc 24030293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 28357483 - 28357435
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattg 225  Q
    ||||||||||||||||| ||||||||||||||||||||||  |||||||    
T  28357483 aataaataagtttttatcttaattcgtaagttctcactaacgaaaattg 28357435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 43268591 - 43268643
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 229  Q
    |||||||||| |||||||||||||  |||||||||||||| ||||||||||||    
T  43268591 aataaataagcttttatgttaatttataagttctcactaacaaaaattgtatc 43268643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 273
Target Start/End: Complemental strand, 28625611 - 28625519
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatcattgatcagaagttattttttcataaactacattgataagctta 273  Q
    |||||||||| |||||||||||||| || |||||||||||  |||||||||||     ||| ||| | |||||||||||||||| |||| |||||||    
T  28625611 aataaataagcttttatgttaattcataggttctcactaacgaaaattgtatc----ttcataagctgttttttcataaactaccttgacaagctta 28625519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 42852150 - 42852101
Alignment:
Q  179 taaataagtttttatgttaattcgtaagttctcactaataaaaattgtat 228  Q
    |||||||| |||||||||||||| ||||||||||||||  ||||||||||    
T  42852150 taaataagcttttatgttaattcataagttctcactaacgaaaattgtat 42852101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 6150912 - 6150872
Alignment:
Q  188 ttttatgttaattcgtaagttctcactaataaaaattgtat 228  Q
    ||||||||||||||||||||||||| ||| |||||||||||    
T  6150912 ttttatgttaattcgtaagttctcagtaacaaaaattgtat 6150872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 7364264 - 7364316
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 229  Q
    |||||||||| |||||| ||||||| |||||||||||||| ||| ||||||||    
T  7364264 aataaataagcttttatattaattcataagttctcactaacaaatattgtatc 7364316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 11163237 - 11163289
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 229  Q
    |||||||||| |||||||||||||| ||||||| ||||||  |||||||||||    
T  11163237 aataaataagcttttatgttaattcataagttcgcactaacgaaaattgtatc 11163289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 23087736 - 23087784
Alignment:
Q  179 taaataagtttttatgttaattcgtaagttctcactaataaaaattgta 227  Q
    ||||| ||||||||| ||||||| |||||||||||||| ||||||||||    
T  23087736 taaattagtttttatattaattcataagttctcactaacaaaaattgta 23087784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 39154716 - 39154764
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattg 225  Q
    |||||||||| |||| ||||||||| |||||||||| ||||||||||||    
T  39154716 aataaataagcttttgtgttaattcataagttctcaataataaaaattg 39154764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 41059744 - 41059792
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattg 225  Q
    |||||||||| |||||||||||||| ||||||||||||||  |||||||    
T  41059744 aataaataagcttttatgttaattcataagttctcactaacgaaaattg 41059792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 224
Target Start/End: Complemental strand, 10274431 - 10274384
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaatt 224  Q
    |||||||||||||||||| ||||||||||||||||  ||| |||||||    
T  10274431 aataaataagtttttatgataattcgtaagttctctttaacaaaaatt 10274384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 216
Target Start/End: Original strand, 13060557 - 13060596
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaa 216  Q
    |||||||||| |||||||||||||| ||||||||||||||    
T  13060557 aataaataagcttttatgttaattcataagttctcactaa 13060596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 228
Target Start/End: Original strand, 29922144 - 29922195
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtat 228  Q
    |||||||||| |||||| ||||||| |||| ||||||||| |||||||||||    
T  29922144 aataaataagcttttatattaattcataagctctcactaaaaaaaattgtat 29922195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 224
Target Start/End: Complemental strand, 35083370 - 35083323
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaatt 224  Q
    |||||||||| |||||||||||||| |||||||||||| || ||||||    
T  35083370 aataaataagcttttatgttaattcataagttctcactgatgaaaatt 35083323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 9477467 - 9477417
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgta 227  Q
    ||||||||||||||||| ||||||| |||||||||| |||  |||||||||    
T  9477467 aataaataagtttttatcttaattcataagttctcagtaacgaaaattgta 9477417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 229
Target Start/End: Original strand, 10537192 - 10537234
Alignment:
Q  187 tttttatgttaattcgtaagttctcactaataaaaattgtatc 229  Q
    ||||||||||||||| ||||||||||||||  |||||||||||    
T  10537192 tttttatgttaattcataagttctcactaacgaaaattgtatc 10537234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 41125805 - 41125752
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaa-taaaaattgtatc 229  Q
    |||| ||||| |||||||||||||| |||||||||||||| ||||| |||||||    
T  41125805 aatatataagcttttatgttaattcataagttctcactaactaaaatttgtatc 41125752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 43319132 - 43319095
Alignment:
Q  179 taaataagtttttatgttaattcgtaagttctcactaa 216  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  43319132 taaataagtttttatcttaattcataagttctcactaa 43319095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 34707668 - 34707720
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 229  Q
    ||||||||||||||||||||||||||||||||||| ||||  |||||||||||    
T  34707668 aataaataagtttttatgttaattcgtaagttctcgctaacgaaaattgtatc 34707720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 177 - 263
Target Start/End: Complemental strand, 20685916 - 20685834
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatcattgatcagaagttattttttcataaactacatt 263  Q
    |||||||||||||||||| ||||||  |||||||||||||| |||||||||||     ||| ||||| |||||| ||||||||||||    
T  20685916 aataaataagtttttatgataattcacaagttctcactaatgaaaattgtatc----ttcataagttgttttttgataaactacatt 20685834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 1516053 - 1516105
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 229  Q
    ||||||||||||||||| ||||||  ||||||||||||||| |||||||||||    
T  1516053 aataaataagtttttattttaatttataagttctcactaatgaaaattgtatc 1516105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 42956134 - 42956186
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 229  Q
    ||||||||||||||||||||||||  ||||||||||||||  |||||||||||    
T  42956134 aataaataagtttttatgttaatttataagttctcactaacgaaaattgtatc 42956186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 40581031 - 40581080
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgt 226  Q
    |||||||||| |||||||||||||| ||||||||||||||  ||||||||    
T  40581031 aataaataagattttatgttaattcataagttctcactaacgaaaattgt 40581080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 273
Target Start/End: Original strand, 3870192 - 3870273
Alignment:
Q  188 ttttatgttaattcgtaagttctcactaataaaaattgtatcattgatcagaagttattttttcataaactacattgataagctta 273  Q
    |||||||||||||| |||||||||| |||| |||| ||||||||    || | ||| |||||||||||||||| |||| |||||||    
T  3870192 ttttatgttaattcataagttctcattaatgaaaagtgtatcat----catatgttgttttttcataaactaccttgacaagctta 3870273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 29830594 - 29830646
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 229  Q
    ||||||||||||||||| ||||||  ||||||||||||||  |||||||||||    
T  29830594 aataaataagtttttattttaatttataagttctcactaacgaaaattgtatc 29830646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 37778264 - 37778212
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 229  Q
    |||||||||| |||||| ||||||  |||||||||||||| ||||||||||||    
T  37778264 aataaataagcttttattttaatttataagttctcactaacaaaaattgtatc 37778212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 53787707 - 53787759
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 229  Q
    ||||||||||||||||| ||||||| |||||||||| ||| ||||||| ||||    
T  53787707 aataaataagtttttatcttaattcataagttctcaataacaaaaattatatc 53787759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 216
Target Start/End: Complemental strand, 10449108 - 10449069
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaa 216  Q
    ||||||||||||||||| ||||||| ||||||||||||||    
T  10449108 aataaataagtttttatcttaattcataagttctcactaa 10449069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 273
Target Start/End: Original strand, 22809148 - 22809240
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatcattgatcagaagttattttttcataaactacattgataagctta 273  Q
    ||||||||||||||||||||||||| ||||||||   |||  ||||||||||| || || || ||   |||||||||||||||| |||| |||||||    
T  22809148 aataaataagtttttatgttaattcataagttcttcttaacgaaaattgtatc-ttcataagcag---ttttttcataaactaccttgacaagctta 22809240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 52895360 - 52895410
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgta 227  Q
    |||||||||| |||||||||||||| ||| ||||||||||  |||||||||    
T  52895360 aataaataagcttttatgttaattcataaattctcactaacgaaaattgta 52895410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 176 - 273
Target Start/End: Original strand, 3069808 - 3069901
Alignment:
Q  176 caataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatcattgatcagaagttattttttcataaactacattgataagctta 273  Q
    ||||||||||| |||||||||||||| ||||||||||||| | |||||||||||     ||| ||| | |||||||||||||||| |||| |||||||    
T  3069808 caataaataagcttttatgttaattcataagttctcactagtgaaaattgtatc----ttcataagctgttttttcataaactaccttgacaagctta 3069901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 273
Target Start/End: Complemental strand, 48819430 - 48819338
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatcattgatcagaagttattttttcataaactacattgataagctta 273  Q
    |||||||||| |||||||||||||| |||||||||||||| ||||| ||||||     ||| ||| | |||||||||||||||| |||| |||||||    
T  48819430 aataaataagcttttatgttaattcataagttctcactaacaaaaaatgtatc----ttcataagctgttttttcataaactaccttgacaagctta 48819338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 273
Target Start/End: Original strand, 6337714 - 6337803
Alignment:
Q  180 aaataagtttttatgttaattcgtaagttctcactaataaaaattgtatcattgatcagaagttattttttcataaactacattgataagctta 273  Q
    ||||||| |||||||||||||| ||||||||| |||| ||||||||||||     ||| ||| | |||||||||||||||| |||| |||||||    
T  6337714 aaataagcttttatgttaattcataagttctcgctaacaaaaattgtatc----ttcataagctgttttttcataaactaccttgacaagctta 6337803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 22593362 - 22593414
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 229  Q
    |||||||||| |||||||||||||  |||||||||||||| ||||||||||||    
T  22593362 aataaataagcttttatgttaatttataagttctcactaacaaaaattgtatc 22593414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 28690135 - 28690083
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 229  Q
    |||||||||| ||||||||||||||  || |||||||||||||||||||||||    
T  28690135 aataaataagcttttatgttaattcagaatttctcactaataaaaattgtatc 28690083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 273
Target Start/End: Original strand, 15515302 - 15515394
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatcattgatcagaagttattttttcataaactacattgataagctta 273  Q
    |||||||||| ||| |||||||||| ||||||||||||||  |||||||||||     ||| ||| | |||||||||||||||| |||| |||||||    
T  15515302 aataaataagctttcatgttaattcataagttctcactaacgaaaattgtatc----ttcataagctcttttttcataaactaccttgacaagctta 15515394  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 14460996 - 14461048
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 229  Q
    |||||| || ||||||||||||||  ||||||||||||||| |||||||||||    
T  14460996 aataaacaaatttttatgttaatttataagttctcactaatgaaaattgtatc 14461048  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 16888921 - 16888973
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 229  Q
    |||||||||| ||||||||||| || ||| ||||||||||| |||||||||||    
T  16888921 aataaataagcttttatgttaagtcataaattctcactaatgaaaattgtatc 16888973  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 41003518 - 41003466
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 229  Q
    |||||||||  |||||||||||||  |||||||||||||||||||||| ||||    
T  41003518 aataaataaacttttatgttaattaataagttctcactaataaaaattatatc 41003466  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 41130125 - 41130073
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 229  Q
    |||||||||| |||||||||||||| ||||||  ||||||| |||||||||||    
T  41130125 aataaataagattttatgttaattcttaagtttgcactaatgaaaattgtatc 41130073  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 228
Target Start/End: Complemental strand, 16708930 - 16708879
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtat 228  Q
    ||||||||| ||||||||||||||| |||| ||| |||||| ||||||||||    
T  16708930 aataaataaatttttatgttaattcataagatcttactaatgaaaattgtat 16708879  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 229
Target Start/End: Original strand, 12871432 - 12871482
Alignment:
Q  179 taaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 229  Q
    ||||||||||||||||||||||| |||||| ||| |||| ||||| |||||    
T  12871432 taaataagtttttatgttaattcataagttttcattaatgaaaatggtatc 12871482  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 391307 - 391254
Alignment:
Q  177 aataaataag-tttttatgttaattcgtaagttctcactaataaaaattgtatc 229  Q
    |||||||||| ||||||||||||||| ||||||||| ||||  |||||||||||    
T  391307 aataaataagctttttatgttaattcataagttctcgctaacgaaaattgtatc 391254  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 9572739 - 9572784
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaa 222  Q
    |||||||||| |||||| ||||||| |||||||||||||| |||||    
T  9572739 aataaataagcttttatattaattcataagttctcactaacaaaaa 9572784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 38781209 - 38781160
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgt 226  Q
    |||||||| | |||||||||||||| ||||||||||||||  ||||||||    
T  38781209 aataaatatgcttttatgttaattcataagttctcactaaccaaaattgt 38781160  T

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Target: scaffold0157 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 24878 - 24826
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 229  Q
    ||||||||||||||||||||||||  ||||||||||||||| || ||||||||    
T  24878 aataaataagtttttatgttaatttataagttctcactaatgaatattgtatc 24826  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000009; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 273
Target Start/End: Complemental strand, 32975818 - 32975726
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatcattgatcagaagttattttttcataaactacattgataagctta 273  Q
    |||||||||| |||||| ||||||| ||||||||||| || ||||||||||||     ||| ||||| | |||||||||||||| |||| |||||||    
T  32975818 aataaataagcttttatattaattcataagttctcacaaacaaaaattgtatc----ttcataagttgtgttttcataaactaccttgacaagctta 32975726  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 260
Target Start/End: Complemental strand, 14262454 - 14262378
Alignment:
Q  180 aaataagtttttatgttaattcgtaagttctcactaataaaaattgtatcattgatcagaagttattttttcataaactac 260  Q
    |||||||||||||||||||||| |||| ||| ||||| ||||||||||| ||   ||| ||||| ||||||||||||||||    
T  14262454 aaataagtttttatgttaattcataagatcttactaacaaaaattgtat-at---tcataagttgttttttcataaactac 14262378  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 10213826 - 10213777
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgt 226  Q
    |||||||||| || ||||||||||| |||||||||||||| |||||||||    
T  10213826 aataaataagcttgtatgttaattcataagttctcactaacaaaaattgt 10213777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 8752937 - 8752885
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 229  Q
    |||||||||| |||||||||||||| ||||||||||| || |||| |||||||    
T  8752937 aataaataagcttttatgttaattcataagttctcacaaacaaaatttgtatc 8752885  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 273
Target Start/End: Original strand, 10298892 - 10298973
Alignment:
Q  188 ttttatgttaattcgtaagttctcactaataaaaattgtatcattgatcagaagttattttttcataaactacattgataagctta 273  Q
    |||||||||||||| |||||||||| ||| ||||||||||||     ||| ||| | |||||||||||||||| |||| |||||||    
T  10298892 ttttatgttaattcataagttctcattaacaaaaattgtatc----ttcataagctgttttttcataaactaccttgacaagctta 10298973  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 25333656 - 25333708
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 229  Q
    |||||||||| |||||||||||||| |||||| |||||||  |||||||||||    
T  25333656 aataaataagcttttatgttaattcataagttttcactaacgaaaattgtatc 25333708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 25465802 - 25465854
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 229  Q
    |||||||||| |||||||||||||| |||||| ||| ||| ||||||||||||    
T  25465802 aataaataagcttttatgttaattcataagttttcagtaacaaaaattgtatc 25465854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 28280840 - 28280796
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaa 221  Q
    ||||||||||||||||| ||||||| |||||||||||||| ||||    
T  28280840 aataaataagtttttatcttaattcataagttctcactaacaaaa 28280796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 32131571 - 32131519
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 229  Q
    |||| ||||| |||||||||||||| ||||||||||||| | |||||||||||    
T  32131571 aatagataagcttttatgttaattcataagttctcactattgaaaattgtatc 32131519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 41145351 - 41145403
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 229  Q
    ||||||||||||| ||| ||||||| ||||||||||||||| ||||| |||||    
T  41145351 aataaataagtttatatattaattcataagttctcactaatgaaaatcgtatc 41145403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 216
Target Start/End: Original strand, 16926683 - 16926722
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaa 216  Q
    ||||||||||||||||||||||||  ||||||||||||||    
T  16926683 aataaataagtttttatgttaatttataagttctcactaa 16926722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 32212970 - 32213019
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgt 226  Q
    |||||||||| |||||||||| ||  ||||||||||||||| ||||||||    
T  32212970 aataaataagcttttatgttattttataagttctcactaatgaaaattgt 32213019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 48583 - 48633
Alignment:
Q  177 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgta 227  Q
    |||||||||| |||||||||||||| ||||||| || ||| ||||||||||    
T  48583 aataaataagcttttatgttaattcataagttcccattaacaaaaattgta 48633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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