View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21233_high_23 (Length: 398)

Name: NF21233_high_23
Description: NF21233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21233_high_23
NF21233_high_23
[»] chr6 (1 HSPs)
chr6 (1-381)||(31273709-31274089)
[»] chr1 (5 HSPs)
chr1 (1-381)||(26215182-26215551)
chr1 (12-373)||(37737098-37737459)
chr1 (11-175)||(9802095-9802259)
chr1 (120-182)||(49639396-49639458)
chr1 (12-45)||(32611003-32611036)
[»] chr3 (3 HSPs)
chr3 (6-374)||(23373636-23374003)
chr3 (24-247)||(19428244-19428467)
chr3 (120-182)||(53979841-53979903)
[»] chr7 (4 HSPs)
chr7 (11-373)||(3004963-3005325)
chr7 (60-163)||(19813037-19813140)
chr7 (102-175)||(18477788-18477861)
chr7 (123-221)||(18480003-18480101)
[»] chr2 (3 HSPs)
chr2 (12-373)||(23682280-23682641)
chr2 (95-351)||(4939057-4939313)
chr2 (95-351)||(5024147-5024403)
[»] scaffold0164 (1 HSPs)
scaffold0164 (120-182)||(25469-25531)
[»] chr8 (3 HSPs)
chr8 (126-184)||(18550969-18551027)
chr8 (120-181)||(15194824-15194885)
chr8 (123-223)||(19873107-19873207)
[»] chr4 (1 HSPs)
chr4 (120-181)||(18255691-18255752)
[»] chr5 (1 HSPs)
chr5 (309-381)||(26465343-26465415)


Alignment Details
Target: chr6 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 31274089 - 31273709
Alignment:
Q  1 accccaaaatctgaagagttgaatctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaatgatgaac 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  31274089 accccaaaatctgaagagctgaatctctaggaaagaataaacctttgcctaaagatgttttaagatatttgagtactctcatagcagcagaatgatgaac 31273990  T
Q  101 ttgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagccttctg 200  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31273989 ttgtgtacgcttagcgaggaactggctcaattgctgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagccttctg 31273890  T
Q  201 taagcagatatatctgtgtatggtggactggaatcacgatgaagtttaacagaagggtcagaaggagtggaaataggtttagagtgagtgagacctgaat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31273889 taagcagatatatctgtgtatggtggactggaatcacgatgaagtttaacagaagggtcagaaggagtggaaataggtttagagtgagtgagacctgaat 31273790  T
Q  301 cagcaagaagatctagacaatattttctctgacaaagtgagataccttgtttgaagtgagcaacttccaaacccagaaagt 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  31273789 cagcaagaagatctagacaatattttctctgacaaagtgagataccttgtttggagtgagcaacttgcaaacccagaaagt 31273709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 243; Significance: 1e-134; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 26215551 - 26215182
Alignment:
Q  1 accccaaaatctgaagagttgaatctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaatgatgaac 100  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||  ||| |||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  26215551 accccaaaatctgaagagctgaatctctaggaaaaaataaaccttttcctagagatgttttaagatatttgagcactctcatagcagcagaatgatgaac 26215452  T
Q  101 ttgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagccttctg 200  Q
    ||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  26215451 ttgggtaggcttagtgaggaactggctcaattgctgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacagcctaccaacaagcattctg 26215352  T
Q  201 taagcagatatatctgtgtatggtggactggaatcacgatgaagtttaacagaagggtcagaaggagtggaaataggtttagagtgagtgagacctgaat 300  Q
    |||| ||| | ||||||||||||| ||||||||||| |||||||||| | ||||||||||||||||||||||| || |||||||||||||||||||||||    
T  26215351 taaggagagacatctgtgtatggttgactggaatcatgatgaagttttatagaagggtcagaaggagtggaaacagatttagagtgagtgagacctgaat 26215252  T
Q  301 cagcaagaagatctagacaatattttctctgacaaagtgagataccttgtttgaagtgagcaacttccaaacccagaaagt 381  Q
     ||||||||||||||||           ||||||||||||||||| ||||||  |||||||||||||||||||||||||||    
T  26215251 tagcaagaagatctaga-----------ctgacaaagtgagatactttgtttagagtgagcaacttccaaacccagaaagt 26215182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 12 - 373
Target Start/End: Original strand, 37737098 - 37737459
Alignment:
Q  12 tgaagagttgaatctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaatgatgaacttgtgtaggct 111  Q
    |||| ||| |||||||| ||||||| ||| |||| ||||||| |  |||| || ||  |||| ||||||||||||| ||  | ||| | |||||| ||||    
T  37737098 tgaatagtggaatctctgggaaagagtaatcctttgcctggacaacttttgaggtacctgagcactctcatagcagcagtgtaatgtatttgtgttggct 37737197  T
Q  112 tagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagccttctgtaagcagatat 211  Q
    | | ||| || || |||||||||||  | | ||| ||||||||||||||||||||||| |||||||| |  |||||||  |  || || |||| ||| ||    
T  37737198 tggtgagaaattgactcaattgttgtattataaaggtaatatcaggtcttgttgtgttcagatacaatagtctaccaatcaatctcctataagaagaaat 37737297  T
Q  212 atctgtgtatggtggactggaatcacgatgaagtttaacagaagggtcagaaggagtggaaataggtttagagtgagtgagacctgaatcagcaagaaga 311  Q
    ||||   || || ||||||||||||  ||| ||||| | |||||| || ||||||||||| |  |||||||| |     ||||||||||||||||| | |    
T  37737298 atcttcataaggaggactggaatcattatgcagtttgatagaaggatctgaaggagtggatactggtttagaattgacaagacctgaatcagcaagcaaa 37737397  T
Q  312 tctagacaatattttctctgacaaagtgagataccttgtttgaagtgagcaacttccaaacc 373  Q
    || |||||||| ||||| ||||| | |||||| ||||||||  | |||||||| || |||||    
T  37737398 tccagacaatactttctttgacacaatgagattccttgtttagaatgagcaacctctaaacc 37737459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 175
Target Start/End: Original strand, 9802095 - 9802259
Alignment:
Q  11 ctgaagagttgaatctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaatgatgaacttgtgtaggc 110  Q
    |||||| || ||||||||||  ||||| ||||||| ||||||| |  | ||||| ||  |||||||||||||||||| || |   ||||  ||||| ||     
T  9802095 ctgaagtgtggaatctctagtgaagaacaaacctttgcctggacaactcttaaggtacctgagtactctcatagcagcagtaaagtgaatatgtgtgggt 9802194  T
Q  111 ttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagata 175  Q
    |||| ||| || || ||||||||||||||||  ||||||||||||||||||||||| || |||||    
T  9802195 ttagtgagaaattgactcaattgttgagtaatgaaagtaatatcaggtcttgttgtattgagata 9802259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 120 - 182
Target Start/End: Original strand, 49639396 - 49639458
Alignment:
Q  120 aactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaac 182  Q
    ||||||||||||||||||  |||||||| ||||||||||||||| ||  ||||||||||||||    
T  49639396 aactggctcaattgttgaacaacaaaagcaatatcaggtcttgtagttgtaagatacaacaac 49639458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 45
Target Start/End: Original strand, 32611003 - 32611036
Alignment:
Q  12 tgaagagttgaatctctaggaaagaataaacctt 45  Q
    ||||||| ||||||||||||||||||||||||||    
T  32611003 tgaagaggtgaatctctaggaaagaataaacctt 32611036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 6 - 374
Target Start/End: Original strand, 23373636 - 23374003
Alignment:
Q  6 aaaatctgaagagttgaatctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaatgatgaacttgtg 105  Q
    ||||| ||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||| |||| |||||||||| || |||||| |||||||| |    
T  23373636 aaaatatgaagagttgaatctctaggaaataataaacctttgcctgaagatgttttaagatatctgagcactctcatagtagcagaatggtgaacttggg 23373735  T
Q  106 taggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagccttctgtaagc 205  Q
    ||||||| |  ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||    
T  23373736 taggcttggtaaggaactggctcaattgctgagtaacaaaagtaatatcaggtcttgctgtgttaagatgcaacaacctaccaactagccttctgtaagc 23373835  T
Q  206 agatatatctgtgtatggtggactggaatcacgatgaagtttaacagaagggtcagaaggagtggaaataggtttagagtgagtgagacctgaatcagca 305  Q
    | | ||  | |||||| |||||||||||||| |||||||||| | |||||  ||| |||||||||||  |||||||||||||||||||||| ||||||||    
T  23373836 aaagatgaccgtgtat-gtggactggaatcatgatgaagttttatagaagtatcaaaaggagtggaagcaggtttagagtgagtgagacctaaatcagca 23373934  T
Q  306 agaagatctagacaatattttctctgacaaagtgagataccttgtttgaagtgagcaacttccaaaccc 374  Q
    |||| ||||||||||||||||| || ||||||||||||||| ||||   | ||||||||||| ||||||    
T  23373935 agaatatctagacaatattttcccttacaaagtgagataccctgttgataatgagcaacttctaaaccc 23374003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 24 - 247
Target Start/End: Complemental strand, 19428467 - 19428244
Alignment:
Q  24 tctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaatgatgaacttgtgtaggcttagcgaggaact 123  Q
    |||||||||||||||||||| | || |||| ||| |||||| ||  |||| ||||||||||||| | |||| |||||||| ||||| ||||  ||||| |    
T  19428467 tctctaggaaagaataaacccttgcttggaaatgatttaaggtacctgagcactctcatagcagcataatggtgaacttgagtaggtttagtaaggaatt 19428368  T
Q  124 ggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagccttctgtaagcagatatatctgtgtatgg 223  Q
    |||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||| | |||||| |||||||| || |||||||||||    
T  19428367 ggctcaattgttgagtgacaaaggtaatgtcaggtcttgttgtgttgagatacaacaacctaccaactaaccttctataagcagaaatgtctgtgtatgg 19428268  T
Q  224 tggactggaatcacgatgaagttt 247  Q
     |||||||||||| ||||||||||    
T  19428267 gggactggaatcatgatgaagttt 19428244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 120 - 182
Target Start/End: Complemental strand, 53979903 - 53979841
Alignment:
Q  120 aactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaac 182  Q
    ||||||||||||||||||  |||||||| ||||||||||||||| ||  ||||||||||||||    
T  53979903 aactggctcaattgttgaacaacaaaagcaatatcaggtcttgtagttgtaagatacaacaac 53979841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 11 - 373
Target Start/End: Complemental strand, 3005325 - 3004963
Alignment:
Q  11 ctgaagagttgaatctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaatgatgaacttgtgtaggc 110  Q
    ||||| ||| |||||||| ||||||| ||| |||| ||||||| |  |||| || ||  |||| ||||||||||||| ||  | ||| | |||||| |||    
T  3005325 ctgaatagtggaatctctgggaaagagtaatcctttgcctggataacttttgaggtacctgagcactctcatagcagcagtgtaatgtatttgtgttggc 3005226  T
Q  111 ttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagccttctgtaagcagata 210  Q
    || | ||| || || ||||||||||| || | ||| ||||||||||||||||||||||| |||||||| |  |||||||  |  || || |||| ||| |    
T  3005225 ttggtgagaaattgactcaattgttgtgttataaaggtaatatcaggtcttgttgtgttcagatacaatagtctaccaatcaatctcctataagaagaaa 3005126  T
Q  211 tatctgtgtatggtggactggaatcacgatgaagtttaacagaagggtcagaaggagtggaaataggtttagagtgagtgagacctgaatcagcaagaag 310  Q
    |||||   ||  | ||||||||||||  ||| ||||| | |||| | || ||||||||||| |  |||||||| |     ||||||||||||||||| |     
T  3005125 tatcttcataaagaggactggaatcattatgcagtttgatagaacgatctgaaggagtggatactggtttagaattgacaagacctgaatcagcaagcaa 3005026  T
Q  311 atctagacaatattttctctgacaaagtgagataccttgtttgaagtgagcaacttccaaacc 373  Q
    ||| |||||||| ||||| ||||| | |||||| ||||||||  | |||||||| || |||||    
T  3005025 atccagacaatactttctttgacacaatgagattccttgtttagaatgagcaacctctaaacc 3004963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 163
Target Start/End: Original strand, 19813037 - 19813140
Alignment:
Q  60 ttaagatatttgagtactctcatagcagaagaatgatgaacttgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtc 159  Q
    ||||||||| |||||||||||||||||| |  ||  ||||  |||||||| || | ||| ||||||||||||||||| |||| ||| ||||||| |||||    
T  19813037 ttaagatatctgagtactctcatagcagcattatagtgaatgtgtgtaggtttggagagaaactggctcaattgttgtgtaataaaggtaatattaggtc 19813136  T
Q  160 ttgt 163  Q
    ||||    
T  19813137 ttgt 19813140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 175
Target Start/End: Complemental strand, 18477861 - 18477788
Alignment:
Q  102 tgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagata 175  Q
    |||||||| |||  ||| || |||||||||| ||||||||||||||||||||||||||| ||||| || |||||    
T  18477861 tgtgtaggtttattgagaaattggctcaattcttgagtaacaaaagtaatatcaggtctagttgtattgagata 18477788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 221
Target Start/End: Original strand, 18480003 - 18480101
Alignment:
Q  123 tggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagccttctgtaagcagatatatctgtgtat 221  Q
    |||||||||||||||||||  || ||||| || ||||| ||||  || | |||||| || || |||||||| |||||||||||||  ||||||||||||    
T  18480003 tggctcaattgttgagtaatgaaggtaatgtctggtctagttgcattcaaatacaataatctcccaacaagtcttctgtaagcaggaatatctgtgtat 18480101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 12 - 373
Target Start/End: Complemental strand, 23682641 - 23682280
Alignment:
Q  12 tgaagagttgaatctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaatgatgaacttgtgtaggct 111  Q
    |||| ||| |||||| | ||||| | ||| |||| ||||||| |  |||| |||||  |||| ||||||||||||| |   | ||| |||||||| ||||    
T  23682641 tgaatagtggaatctttgggaaaaagtaatcctttgcctggacaacttttgagatacctgagcactctcatagcagcaatgtaatgtacttgtgttggct 23682542  T
Q  112 tagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagccttctgtaagcagatat 211  Q
    | | ||| || || ||||||||||| || | ||| ||||||||||||||||||||||| |||||||| |  |||||||  |  || || |||| ||| ||    
T  23682541 tggtgagaaattgactcaattgttgtgttataaaggtaatatcaggtcttgttgtgttcagatacaatagtctaccaatcaatctcctataagaagaaat 23682442  T
Q  212 atctgtgtatggtggactggaatcacgatgaagtttaacagaagggtcagaaggagtggaaataggtttagagtgagtgagacctgaatcagcaagaaga 311  Q
    ||||   ||  | ||||||||||||  ||| | ||| | |||||| || ||||||||||| |  |||||||| |     ||||||||||||||||| | |    
T  23682441 atcttcataaagaggactggaatcattatgcaatttgatagaaggatctgaaggagtggatactggtttagaattgacaagacctgaatcagcaagcaaa 23682342  T
Q  312 tctagacaatattttctctgacaaagtgagataccttgtttgaagtgagcaacttccaaacc 373  Q
    || |||||||| ||||| ||||| | ||| |||||||||||  | |||||||| || |||||    
T  23682341 tccagacaatactttctttgacacaatgaaataccttgtttagaatgagcaacctctaaacc 23682280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 95 - 351
Target Start/End: Original strand, 4939057 - 4939313
Alignment:
Q  95 atgaacttgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagc 194  Q
    |||||||||||||||||||| |||||||||||| | |||||||||||  ||||| |||||||||||| | || ||||| || |  |  ||| |||  |      
T  4939057 atgaacttgtgtaggcttagtgaggaactggctaagttgttgagtaatgaaagtgatatcaggtcttttggtattaaggtatagaagtctatcaatcaat 4939156  T
Q  195 cttctgtaagcagatatatctgtgtatggtggactggaatcacgatgaagtttaacagaagggtcagaaggagtggaaataggtttagagtgagtgagac 294  Q
    ||||| || | ||| || |||   || || |  ||||||||| |||| |  || ||||| || |||||||| |||||||||||||| || | ||| ||||    
T  4939157 cttctatatgaagaaatgtcttcataaggagagctggaatcatgatgtaacttcacagatggatcagaaggtgtggaaataggtttggaataagtaagac 4939256  T
Q  295 ctgaatcagcaagaagatctagacaatattttctctgacaaagtgagataccttgtt 351  Q
     ||||||||| | |||||| | ||||||||||||||| ||| | |||||||| ||||    
T  4939257 ttgaatcagccaaaagatccaaacaatattttctctggcaatgagagataccctgtt 4939313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 95 - 351
Target Start/End: Original strand, 5024147 - 5024403
Alignment:
Q  95 atgaacttgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagc 194  Q
    |||||||||||||||||||| |||||||||||| | |||||||||||  ||||| |||||||||||| | || ||||| || |  |  ||| |||  |      
T  5024147 atgaacttgtgtaggcttagtgaggaactggctaagttgttgagtaatgaaagtgatatcaggtcttttggtattaaggtatagaagtctatcaatcaat 5024246  T
Q  195 cttctgtaagcagatatatctgtgtatggtggactggaatcacgatgaagtttaacagaagggtcagaaggagtggaaataggtttagagtgagtgagac 294  Q
    ||||| || | ||| || |||   || || |  ||||||||| |||| |  || ||||| || |||||||| |||||||||||||| || | ||| ||||    
T  5024247 cttctatatgaagaaatgtcttcataaggagagctggaatcatgatgtaacttcacagatggatcagaaggtgtggaaataggtttggaataagtaagac 5024346  T
Q  295 ctgaatcagcaagaagatctagacaatattttctctgacaaagtgagataccttgtt 351  Q
     ||||||||| | |||||| | ||||||||||||||| ||| | |||||||| ||||    
T  5024347 ttgaatcagccaaaagatccaaacaatattttctctggcaatgagagataccctgtt 5024403  T

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Target: scaffold0164 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 120 - 182
Target Start/End: Original strand, 25469 - 25531
Alignment:
Q  120 aactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaac 182  Q
    ||||||||||||||||||  |||||||| ||||||||||||||| ||  ||||||||||||||    
T  25469 aactggctcaattgttgaacaacaaaagcaatatcaggtcttgtagttgtaagatacaacaac 25531  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 18550969 - 18551027
Alignment:
Q  126 ctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacct 184  Q
    ||||||||||||||||||||||| ||||||||||||||||| || ||||| | ||||||    
T  18550969 ctcaattgttgagtaacaaaagtgatatcaggtcttgttgtattgagataaagcaacct 18551027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 181
Target Start/End: Complemental strand, 15194885 - 15194824
Alignment:
Q  120 aactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaa 181  Q
    ||||||||||||||||||  |||||||| ||||||||||||||| ||  |||||||||||||    
T  15194885 aactggctcaattgttgaacaacaaaagcaatatcaggtcttgtagttgtaagatacaacaa 15194824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 223
Target Start/End: Complemental strand, 19873207 - 19873107
Alignment:
Q  123 tggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagccttctgtaagcagatatatctgtgtatg 222  Q
    |||||||||||||||||||  || ||||| |  ||||| ||||  || | |||||| || || |||||||| |||||||||||||  |||||||||||||    
T  19873207 tggctcaattgttgagtaatgaaggtaatgtatggtctagttgcattcaaatacaataatctcccaacaagtcttctgtaagcaggaatatctgtgtatg 19873108  T
Q  223 g 223  Q
    |    
T  19873107 g 19873107  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 120 - 181
Target Start/End: Complemental strand, 18255752 - 18255691
Alignment:
Q  120 aactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaa 181  Q
    ||||| ||||||||||||  |||||||| ||||||||||||||| ||  |||||||||||||    
T  18255752 aactgactcaattgttgaacaacaaaagcaatatcaggtcttgtagttgtaagatacaacaa 18255691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 381
Target Start/End: Original strand, 26465343 - 26465415
Alignment:
Q  309 agatctagacaatattttctctgacaaagtgagataccttgtttgaagtgagcaacttccaaacccagaaagt 381  Q
    ||||| |||||||||||||| || ||||| ||||| ||||||  | | ||||||||||| ||||| |||||||    
T  26465343 agatcaagacaatattttctttggcaaagagagatgccttgtgaggaatgagcaacttctaaaccaagaaagt 26465415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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