View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21233_high_29 (Length: 351)
Name: NF21233_high_29
Description: NF21233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21233_high_29 |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 36 - 341
Target Start/End: Complemental strand, 46327998 - 46327693
Alignment:
| Q |
36 |
ctattatgatatagagatttataattacaacaattatgattcaaaatatgaggaatgatagggtccaattcgagtatcgttgcattccaaattttagaga |
135 |
Q |
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| T |
46327998 |
ctattatgatatagagatttataattacaacaattatgattcaaaatatgaggaatgatagggtccaattcgagtatcgttgcattccaaattttagaga |
46327899 |
T |
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| Q |
136 |
gggaagatacagctaaaagaaaggaaaatagactaacttcttaatttatacccattatgatatcatatgacgagtatataattaaaaccagtgcagactt |
235 |
Q |
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| T |
46327898 |
gggaagatacagctaaaagaaaggaaaatagactaacttcttaatttatacccattatgatatcatatgacgagtatataattaaaaccagtgcagactt |
46327799 |
T |
|
| Q |
236 |
gcaataaaacaactagaccctaatacattcagtattactctctaaagagaatgcacagtattcattctatattaagttgattgagtcatgcttgcttgta |
335 |
Q |
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| T |
46327798 |
gcaataaaacaactagaccctaatacattcagcattactctctaaagagaatgcacagtattcattctatattaagttgatcgagtcatgcttgcttgta |
46327699 |
T |
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| Q |
336 |
gaatta |
341 |
Q |
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|||||| |
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| T |
46327698 |
gaatta |
46327693 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 201
Target Start/End: Complemental strand, 7476364 - 7476284
Alignment:
| Q |
123 |
caaattttagagagggaagataca--gctaaaagaaaggaaaatagactaacttcttaatttatacccattatgatatcat |
201 |
Q |
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| T |
7476364 |
caaaatttagagaggaatgatacatagctaaaagaacggaaaatagattaacttcttcattcatgtccattatgatgtcat |
7476284 |
T |
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