View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21233_high_40 (Length: 279)
Name: NF21233_high_40
Description: NF21233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21233_high_40 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 22 - 278
Target Start/End: Complemental strand, 5608251 - 5607995
Alignment:
| Q |
22 |
gactaattggatcataaaataaaataatgatttaatggtttttgtcatgacaattaggagactttatcttataactcaagtattgtaatgaaataatgag |
121 |
Q |
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| T |
5608251 |
gactaattggatcataaaataaaataatgatttaatggtttttgtcatgacaattaggagactttatcttataactcaagtattgcaatgaaataatgag |
5608152 |
T |
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| Q |
122 |
attgagaaaagaagaacaaggatcaatggagcaaactagtattattcattcacnnnnnnnnnccggcaaatacaagatactgagaaaagaatacaagaca |
221 |
Q |
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| T |
5608151 |
attgagaaaagaagaacaaggatcaatggagcaaactagtattattcattcactattttttttcggcaaatacaagatactgagaaaagaatacaagaca |
5608052 |
T |
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| Q |
222 |
ttgaattaaagaactgtattgaaactaagaaatcaataaaagactagggtcctatgc |
278 |
Q |
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| T |
5608051 |
ttgaattaaagaactgtattgaaactaagaaatcaataaaagactggggtcctatgc |
5607995 |
T |
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