View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21233_high_5 (Length: 724)
Name: NF21233_high_5
Description: NF21233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21233_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 288 - 594
Target Start/End: Complemental strand, 43296993 - 43296683
Alignment:
| Q |
288 |
ggtatcaaccctccggtttatgtgaaaagaagacttagataatttaatgttcgattagaaggtaagtaaagttagagtttcaaccaaaattcatatgtgt |
387 |
Q |
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| T |
43296993 |
ggtatcaaccctccggtttatgtgaaaagaagacttagataatttaacgttcgattagaaggtaagtaaagttagagtttcaaccaaaattcatatgcgt |
43296894 |
T |
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| Q |
388 |
tattatcatcgatccaaagatactgttttggtggcataatagcactgcagtgcaggaccaccacaagcaaatgcatgcattagtggtttgggccattaat |
487 |
Q |
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| T |
43296893 |
tattatcatcgatccaaggatactgttttggtggcataatagcactgcagtgcaggaccaccacaagcaaatgcatgcattagtggtttgggccattaat |
43296794 |
T |
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| Q |
488 |
agtttggtaggactaggaagcactgctctaggcccaaagtgtaatat----tattgttctagccccactatgccgatgtattgtctgcgtgcaaatacaa |
583 |
Q |
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| T |
43296793 |
agtttggtaggactaggaagcactgctctaggcccaaaatgtaatattatttattgttctagccgcactatgccgatgtattgtctgcgtgcaaatacaa |
43296694 |
T |
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| Q |
584 |
atatacacagg |
594 |
Q |
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| T |
43296693 |
atatacacagg |
43296683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 12 - 269
Target Start/End: Complemental strand, 43297275 - 43297018
Alignment:
| Q |
12 |
attatccaaggacaataagactcaactgaaaacccattaaaatataagcacccacaattagcatttagtaaaaagaaccaggagtaaaagttttaatttc |
111 |
Q |
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| T |
43297275 |
attatccaaggacaataagactcaactgaaaacccattaaaatataagcacccacaattagcatttagtaaaaagaacaaggagtaaaagttttaatttc |
43297176 |
T |
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| Q |
112 |
acttttaatctcttaaatcttggaattatgtactttttattctcaacttttcaataccctgaattagatcctcataccaagaaaaatggcatcatcatcg |
211 |
Q |
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| T |
43297175 |
aattttaatctcttaaatcttggaattatgtaatttttattctcaacttttcaataccctgaattagatcctcataccaagaaaaatggcatcatcatcg |
43297076 |
T |
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| Q |
212 |
ccatatataattgtgaagctaaaagtgaaatgacagcatgaataaaattgagtcactc |
269 |
Q |
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| T |
43297075 |
ccatatataattgtgaagctaaaagtgaaatgacagcataaataaaattgagtcactc |
43297018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 670 - 707
Target Start/End: Complemental strand, 43296685 - 43296648
Alignment:
| Q |
670 |
aggtgcaactaacatagtagtattacaaaatattgctt |
707 |
Q |
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| T |
43296685 |
aggtgcaactaacatagtagtattacaaaatattgctt |
43296648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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