View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21233_high_6 (Length: 711)

Name: NF21233_high_6
Description: NF21233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21233_high_6
NF21233_high_6
[»] chr1 (16 HSPs)
chr1 (169-476)||(31965183-31965490)
chr1 (516-693)||(31964966-31965143)
chr1 (22-108)||(31965552-31965638)
chr1 (267-459)||(31921246-31921436)
chr1 (256-374)||(31967712-31967830)
chr1 (613-692)||(9883718-9883797)
chr1 (602-692)||(31967363-31967453)
chr1 (39-92)||(41677116-41677169)
chr1 (44-108)||(1721180-1721244)
chr1 (577-659)||(9260922-9261005)
chr1 (40-91)||(19866532-19866583)
chr1 (339-378)||(31917188-31917227)
chr1 (39-77)||(3341722-3341760)
chr1 (39-92)||(2903013-2903066)
chr1 (40-77)||(49632358-49632395)
chr1 (39-108)||(50199462-50199531)
[»] chr4 (20 HSPs)
chr4 (587-692)||(20941908-20942013)
chr4 (575-683)||(12100774-12100882)
chr4 (39-108)||(20610779-20610848)
chr4 (602-686)||(22299846-22299930)
chr4 (567-685)||(20879158-20879277)
chr4 (567-685)||(20897769-20897888)
chr4 (314-439)||(25316100-25316224)
chr4 (567-685)||(19319984-19320103)
chr4 (39-92)||(12585545-12585598)
chr4 (561-678)||(23480939-23481061)
chr4 (43-92)||(24039940-24039989)
chr4 (39-108)||(49039431-49039500)
chr4 (650-685)||(22335898-22335933)
chr4 (39-92)||(17859834-17859885)
chr4 (187-249)||(19328518-19328580)
chr4 (567-684)||(22319082-22319200)
chr4 (39-77)||(33359888-33359926)
chr4 (40-108)||(36008315-36008381)
chr4 (41-86)||(54264990-54265035)
chr4 (39-92)||(54854165-54854218)
[»] chr3 (6 HSPs)
chr3 (39-92)||(6054211-6054264)
chr3 (39-95)||(40160788-40160844)
chr3 (39-108)||(21248976-21249045)
chr3 (45-97)||(8493280-8493330)
chr3 (38-87)||(44592061-44592109)
chr3 (40-100)||(53472673-53472731)
[»] chr8 (4 HSPs)
chr8 (39-79)||(39208855-39208895)
chr8 (40-79)||(27821892-27821931)
chr8 (41-79)||(22847250-22847288)
chr8 (39-92)||(30461592-30461643)
[»] chr5 (12 HSPs)
chr5 (39-95)||(37986853-37986909)
chr5 (39-106)||(6014821-6014886)
chr5 (39-95)||(22687867-22687923)
chr5 (40-92)||(40384307-40384359)
chr5 (40-92)||(42260707-42260759)
chr5 (39-98)||(39684288-39684347)
chr5 (41-95)||(39760127-39760182)
chr5 (39-100)||(2029116-2029175)
chr5 (39-108)||(32158402-32158469)
chr5 (43-95)||(21017595-21017648)
chr5 (39-84)||(28768661-28768706)
chr5 (39-92)||(34010591-34010644)
[»] chr7 (6 HSPs)
chr7 (640-686)||(23396236-23396282)
chr7 (49-95)||(28968679-28968725)
chr7 (613-669)||(10202614-10202670)
chr7 (39-86)||(48007084-48007131)
chr7 (39-77)||(26734257-26734295)
chr7 (39-83)||(20947826-20947868)
[»] chr2 (5 HSPs)
chr2 (39-99)||(30737030-30737090)
chr2 (39-77)||(1244640-1244678)
chr2 (39-92)||(12206554-12206607)
chr2 (39-87)||(22538600-22538646)
chr2 (39-92)||(39334867-39334920)
[»] chr6 (4 HSPs)
chr6 (629-692)||(20729356-20729419)
chr6 (40-84)||(12311390-12311432)
chr6 (323-380)||(21908940-21908997)
chr6 (40-77)||(26669646-26669683)
[»] scaffold0039 (1 HSPs)
scaffold0039 (39-108)||(101871-101938)
[»] scaffold0119 (1 HSPs)
scaffold0119 (40-77)||(1110-1147)


Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 169 - 476
Target Start/End: Complemental strand, 31965490 - 31965183
Alignment:
Q  169 catttgtaagaacctatgatacaaacattatgacatgtaaataaaaatatacgcttagaggtaacatagctaattttaaacaattgttacggtgatcccc 268  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  31965490 catttgtaagaacctatgatacaaacattgtgacatgtaaataaaattatacgcttagaggtaatatagctaattttaaacaattgttacggtgatcccc 31965391  T
Q  269 atatctcacaaaaattataaatgcactttataaatagaggatacgatgcttttggacaatcatagtcagaaacacatggaatgcgagctgcattgtcaaa 368  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31965390 atatctcacaaaaattataaatgcactttataaatagaggatacgatgcttttggacaatcatagtcagaaacacatggaatgcgagctgcattgtcaaa 31965291  T
Q  369 taagaagaaaaagattgttagtacaaggtggtataatattatgtataagttgaattacaaaatttgaaaatggtatcaaaatgacatacttctagaactg 468  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  31965290 taagaagaaaaagattgttagtaaaaggtgatataatattatgtataagttgaattacaaaatttgaaaatggtatcaaaatgacatacttctataactg 31965191  T
Q  469 gttacaac 476  Q
    ||||||||    
T  31965190 gttacaac 31965183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 516 - 693
Target Start/End: Complemental strand, 31965143 - 31964966
Alignment:
Q  516 caggagaatttgtgtcatattttacccctttgcattcgatagatatgattatttttattgctttataagtaaaatttcctgattttttaacttcaactaa 615  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31965143 caggagaatttgtgtcatattttacccctttgcattcaataaatatgattatttttattgctttataagtaaaatttccttattttttaacttcaactaa 31965044  T
Q  616 atagtttataacacttaagagttgcaagaagacgtttataaaattaaaattaatgttaaatgtctctaatcgatatgc 693  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31965043 atagtttatagcacttaagagttgcaagaagacgtttataaaattaaaattaatgttaaatgtctctaatcgatatgc 31964966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 22 - 108
Target Start/End: Complemental strand, 31965638 - 31965552
Alignment:
Q  22 atcaggtagtttagtggctagtggctagaattcaccttttaaaaggtgaataagtgagatgttcggagttcaaatcccggtccctgc 108  Q
    ||||||||||||||| | ||||| ||||||||||| |||||||||||||||||||||| |||||||||||| || |||| |||||||    
T  31965638 atcaggtagtttagtagttagtgactagaattcactttttaaaaggtgaataagtgaggtgttcggagttcgaaccccgatccctgc 31965552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 267 - 459
Target Start/End: Complemental strand, 31921436 - 31921246
Alignment:
Q  267 ccatatctcacaaaaattataaatgcactttataaatagaggatacgatgcttttggacaatcatagtcagaaacacatggaatgcgagctgcattgtca 366  Q
    |||||||||||||||||||| ||| || || |||||||||||||| |     ||||| ||||||| |  ||||||||| |||||||||||||||||||      
T  31921436 ccatatctcacaaaaattatcaatacatttcataaatagaggataaggcctctttgggcaatcattgcgagaaacacacggaatgcgagctgcattgttg 31921337  T
Q  367 aataagaagaaaaagattgttagtacaaggtggtataatattatgtataagttgaattacaaaatttgaaaatggtatcaaaatgacatactt 459  Q
    |||||||| |||||   ||||| || |||  | |||||||||| ||||||| | ||||| |||| ||||||||||| | ||||||| ||||||    
T  31921336 aataagaaaaaaaaa--tgttactaaaagaagatataatattaagtataagataaattagaaaaattgaaaatggtgttaaaatgatatactt 31921246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 256 - 374
Target Start/End: Complemental strand, 31967830 - 31967712
Alignment:
Q  256 tacggtgatccccatatctcacaaaaattataaatgcactttataaatagaggatacgatgcttttggacaatcatagtcagaaacacatggaatgcgag 355  Q
    ||||| ||| ||||||| |||||||| ||||    |||||||||| | |||||||| | | | ||||||||||||| |||||||||||| | |||  |||    
T  31967830 tacggggatgcccatatgtcacaaaagttatcttcgcactttatatagagaggataaggtacctttggacaatcatcgtcagaaacacaagaaatctgag 31967731  T
Q  356 ctgcattgtcaaataagaa 374  Q
    ||||||| |||||||||||    
T  31967730 ctgcattatcaaataagaa 31967712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 613 - 692
Target Start/End: Original strand, 9883718 - 9883797
Alignment:
Q  613 taaatagtttataacacttaagagttgcaagaagacgtttataaaattaaaattaatgttaaatgtctctaatcgatatg 692  Q
    |||||||||| || || ||| ||||||||||||| | ||||||||||  |||||||||||||| ||||||| || |||||    
T  9883718 taaatagtttttagcatttatgagttgcaagaagccatttataaaatggaaattaatgttaaacgtctctactcaatatg 9883797  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 602 - 692
Target Start/End: Complemental strand, 31967453 - 31967363
Alignment:
Q  602 ttaacttcaactaaatagtttataacacttaagagttgcaagaagacgtttataaaattaaaattaatgttaaatgtctctaatcgatatg 692  Q
    |||||||||| ||||||  || || |||||| |||||  |||||| | ||||||||||| |||| |||||||||| ||||||||| |||||    
T  31967453 ttaacttcaattaaataagttttagcacttaggagttctaagaagccatttataaaattgaaatcaatgttaaatatctctaatcaatatg 31967363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 92
Target Start/End: Complemental strand, 41677169 - 41677116
Alignment:
Q  39 ctagtggctagaattcaccttttaaaaggtgaataagtgagatgttcggagttc 92  Q
    |||||||||||||||||||||||  |||||||||||||| | ||| ||||||||    
T  41677169 ctagtggctagaattcacctttttcaaggtgaataagtggggtgtccggagttc 41677116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 44 - 108
Target Start/End: Complemental strand, 1721244 - 1721180
Alignment:
Q  44 ggctagaattcaccttttaaaaggtgaataagtgagatgttcggagttcaaatcccggtccctgc 108  Q
    ||||||||||||||||||  |||||||||||||||| ||| ||| |||| || ||||| ||||||    
T  1721244 ggctagaattcaccttttttaaggtgaataagtgaggtgtccggggttcgaaacccggcccctgc 1721180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 577 - 659
Target Start/End: Original strand, 9260922 - 9261005
Alignment:
Q  577 tttataagtaaa-atttcctgattttttaacttcaactaaatagtttataacacttaagagttgcaagaagacgtttataaaat 659  Q
    |||||||||||| ||||| |||||| ||| ||| || |||||||||| || |||||| | ||||||||||| | ||||||||||    
T  9260922 tttataagtaaatatttcatgatttgttagcttaaattaaatagtttttagcacttatgtgttgcaagaagccatttataaaat 9261005  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 19866583 - 19866532
Alignment:
Q  40 tagtggctagaattcaccttttaaaaggtgaataagtgagatgttcggagtt 91  Q
    ||||||||||||||||||||||  |||||||||||||| | ||| |||||||    
T  19866583 tagtggctagaattcaccttttttaaggtgaataagtggggtgtccggagtt 19866532  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 339 - 378
Target Start/End: Complemental strand, 31917227 - 31917188
Alignment:
Q  339 aacacatggaatgcgagctgcattgtcaaataagaagaaa 378  Q
    |||||| |||||| ||||||||||||||||||||||||||    
T  31917227 aacacaaggaatgtgagctgcattgtcaaataagaagaaa 31917188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 39 - 77
Target Start/End: Original strand, 3341722 - 3341760
Alignment:
Q  39 ctagtggctagaattcaccttttaaaaggtgaataagtg 77  Q
    |||||||||||||||||||||||  ||||||||||||||    
T  3341722 ctagtggctagaattcacctttttcaaggtgaataagtg 3341760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 2903013 - 2903066
Alignment:
Q  39 ctagtggctagaattcaccttttaaaaggtgaataagtgagatgttcggagttc 92  Q
    |||||||||||||||| ||||||  |||||||||||||| | ||||||| ||||    
T  2903013 ctagtggctagaattctcctttttcaaggtgaataagtggggtgttcggggttc 2903066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 49632395 - 49632358
Alignment:
Q  40 tagtggctagaattcaccttttaaaaggtgaataagtg 77  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  49632395 tagtgcctagaattcacctttttaaaggtgaataagtg 49632358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 50199462 - 50199531
Alignment:
Q  39 ctagtggctagaattcaccttttaaaaggtgaataagtgagatgttcggagttcaaatcccggtccctgc 108  Q
    ||||||||||||||| |||||||  |||||||||||||| | ||| ||| |||| || ||||| ||||||    
T  50199462 ctagtggctagaattgacctttttcaaggtgaataagtggggtgtccggggttcgaaccccggcccctgc 50199531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 587 - 692
Target Start/End: Complemental strand, 20942013 - 20941908
Alignment:
Q  587 aaatttcctgattttttaacttcaactaaatagtttataacacttaagagttgcaagaagacgtttataaaattaaaattaatgttaaatgtctctaatc 686  Q
    ||||||| || |||| ||||||||| |||||| ||| ||||||||||||||| || | || | ||||||||||| |||||||||||| ||||||||||||    
T  20942013 aaatttcatgcttttataacttcaattaaatattttttaacacttaagagttacaggtagccatttataaaattgaaattaatgttagatgtctctaatc 20941914  T
Q  687 gatatg 692  Q
     |||||    
T  20941913 aatatg 20941908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 575 - 683
Target Start/End: Original strand, 12100774 - 12100882
Alignment:
Q  575 gctttataagtaaaatttcctgattttttaacttcaactaaatagtttataacacttaagagttgcaagaagacgtttataaaattaaaattaatgttaa 674  Q
    ||||||||||||||||| |  | |||  ||| ||||| |||||||||| ||| ||||| ||||| ||| ||| |||| ||||||||||||||||||||||    
T  12100774 gctttataagtaaaattccaagctttggtaatttcaattaaatagtttttaagacttaggagtttcaaaaagtcgttgataaaattaaaattaatgttaa 12100873  T
Q  675 atgtctcta 683  Q
     ||||||||    
T  12100874 gtgtctcta 12100882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 108
Target Start/End: Complemental strand, 20610848 - 20610779
Alignment:
Q  39 ctagtggctagaattcaccttttaaaaggtgaataagtgagatgttcggagttcaaatcccggtccctgc 108  Q
    |||||||||||||||||||||||  |||||||||||||| ||||| |||||||| || ||||| ||||||    
T  20610848 ctagtggctagaattcaccttttttaaggtgaataagtgggatgtccggagttcgaaccccggcccctgc 20610779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 602 - 686
Target Start/End: Complemental strand, 22299930 - 22299846
Alignment:
Q  602 ttaacttcaactaaatagtttataacacttaagagttgcaagaagacgtttataaaattaaaattaatgttaaatgtctctaatc 686  Q
    |||||||||| |||||| ||| ||  ||||||||||||||||||| | |||| ||| || ||||||||||||||| |||||||||    
T  22299930 ttaacttcaattaaataatttttagaacttaagagttgcaagaagccatttaaaaagttgaaattaatgttaaatatctctaatc 22299846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 567 - 685
Target Start/End: Complemental strand, 20879277 - 20879158
Alignment:
Q  567 tttttattgctttataagtaaa-atttcctgattttttaacttcaactaaatagtttataacacttaagagttgcaagaagacgtttataaaattaaaat 665  Q
    |||||||||||||||||||||| ||||  || |||  ||| ||||| |||  | ||| ||||||||| |||||| |||||| | ||||| |||||| |||    
T  20879277 tttttattgctttataagtaaatattttatgctttggtaatttcaattaagcaatttttaacacttaggagttgtaagaagccatttattaaattacaat 20879178  T
Q  666 taatgttaaatgtctctaat 685  Q
    |||| |||||||||||||||    
T  20879177 taatattaaatgtctctaat 20879158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 567 - 685
Target Start/End: Original strand, 20897769 - 20897888
Alignment:
Q  567 tttttattgctttataagtaaa-atttcctgattttttaacttcaactaaatagtttataacacttaagagttgcaagaagacgtttataaaattaaaat 665  Q
    |||| ||||||||||||||||| ||||  || |||  ||||||||| |||| | ||| ||||||||| || ||| |||||| | ||||| ||||||||||    
T  20897769 ttttgattgctttataagtaaatattttatgctttggtaacttcaattaaacaatttttaacacttaggaattgaaagaagccatttattaaattaaaat 20897868  T
Q  666 taatgttaaatgtctctaat 685  Q
    |||| |||| ||||||||||    
T  20897869 taatattaattgtctctaat 20897888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 314 - 439
Target Start/End: Original strand, 25316100 - 25316224
Alignment:
Q  314 atgcttttggacaatcatagtcagaaacacatggaatgcgagctgcattgtcaaataagaagaaaaagattgttagtacaaggtggtataatattatgta 413  Q
    |||||| | |||||||||  ||||||||||||||| ||||| |||||| |||||||||||| ||||| ||  ||| ||  ||||| ||||||||  ||||    
T  25316100 atgcttctagacaatcatcatcagaaacacatggagtgcgaactgcatcgtcaaataagaa-aaaaatatctttactaataggtgatataatatcgtgta 25316198  T
Q  414 taagttgaattacaaaatttgaaaat 439  Q
    |||| | ||||| ||||||| |||||    
T  25316199 taagataaattagaaaatttcaaaat 25316224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 567 - 685
Target Start/End: Complemental strand, 19320103 - 19319984
Alignment:
Q  567 tttttattgctttataagtaaa-atttcctgattttttaacttcaactaaatagtttataacacttaagagttgcaagaagacgtttataaaattaaaat 665  Q
    ||||||| |||||||||||||| | ||  || |||| ||||||||| | ||||| || || |||||| |||||| ||| || | ||||||||||| ||||    
T  19320103 tttttatcgctttataagtaaatagttaatgcttttataacttcaattgaatagcttgtagcacttacgagttgtaaggagccatttataaaattgaaat 19320004  T
Q  666 taatgttaaatgtctctaat 685  Q
    | || |||||||||||||||    
T  19320003 ttatattaaatgtctctaat 19319984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 12585545 - 12585598
Alignment:
Q  39 ctagtggctagaattcaccttttaaaaggtgaataagtgagatgttcggagttc 92  Q
    |||||||||||||||||||||||  ||| |||||||||||| ||||||| ||||    
T  12585545 ctagtggctagaattcacctttttcaagatgaataagtgaggtgttcggggttc 12585598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 561 - 678
Target Start/End: Complemental strand, 23481061 - 23480939
Alignment:
Q  561 tgattatttttattgctttataagtaaaatt-tcctgattttttaacttcaactaaatagtttataacacttaagagttgcaagaagac----gtttata 655  Q
    ||||| ||||||| |||||||||||||||   || | |||| ||| ||| || ||||||| || ||||||||||||||||||||||| |     ||||||    
T  23481061 tgattttttttatcgctttataagtaaaaaaatcatcatttgttatctttaattaaataggttttaacacttaagagttgcaagaagccatttatttata 23480962  T
Q  656 aaattaaaattaatgttaaatgt 678  Q
    | ||| |||||||||||||||||    
T  23480961 agattgaaattaatgttaaatgt 23480939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 24039989 - 24039940
Alignment:
Q  43 tggctagaattcaccttttaaaaggtgaataagtgagatgttcggagttc 92  Q
    |||||||||||||||||||  |||||||||||||||| ||||||| ||||    
T  24039989 tggctagaattcacctttttcaaggtgaataagtgaggtgttcggggttc 24039940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 49039431 - 49039500
Alignment:
Q  39 ctagtggctagaattcaccttttaaaaggtgaataagtgagatgttcggagttcaaatcccggtccctgc 108  Q
    |||||||||||||||||||||||  |||||||||||||| | ||| ||| |||| || ||| ||||||||    
T  49039431 ctagtggctagaattcacctttttcaaggtgaataagtggggtgtccggggttcgaaccccagtccctgc 49039500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 650 - 685
Target Start/End: Complemental strand, 22335933 - 22335898
Alignment:
Q  650 tttataaaattaaaattaatgttaaatgtctctaat 685  Q
    ||||||||||| ||||||||||||||||||||||||    
T  22335933 tttataaaattgaaattaatgttaaatgtctctaat 22335898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 39 - 92
Target Start/End: Complemental strand, 17859885 - 17859834
Alignment:
Q  39 ctagtggctagaattcaccttttaaaaggtgaataagtgagatgttcggagttc 92  Q
    ||||||||||||||||||||| |||  |||||||||||||| ||||||| ||||    
T  17859885 ctagtggctagaattcaccttataa--ggtgaataagtgaggtgttcggggttc 17859834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 187 - 249
Target Start/End: Complemental strand, 19328580 - 19328518
Alignment:
Q  187 atacaaacattatgacatgtaaataaaaatatacgcttagaggtaacatagctaattttaaac 249  Q
    ||||||| ||||||||||  |||||||| |||||||||||| ||||||||  || ||||||||    
T  19328580 atacaaatattatgacatacaaataaaattatacgcttagaagtaacataattatttttaaac 19328518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 567 - 684
Target Start/End: Original strand, 22319082 - 22319200
Alignment:
Q  567 tttttattgctttataagt-aaaatttcctgattttttaacttcaactaaatagtttataacacttaagagttgcaagaagacgtttataaaattaaaat 665  Q
    |||||||| ||||||| || |||||||| |  ||| |||||||||| ||||| |||| ||  |||| ||| |  ||||||||| |||||||||||| ||     
T  22319082 tttttatttctttatatgtgaaaatttcattctttgttaacttcaattaaatggtttttagaactttagactaacaagaagacatttataaaattagaaa 22319181  T
Q  666 taatgttaaatgtctctaa 684  Q
    |||| |||||| |||||||    
T  22319182 taatattaaatttctctaa 22319200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 39 - 77
Target Start/End: Complemental strand, 33359926 - 33359888
Alignment:
Q  39 ctagtggctagaattcaccttttaaaaggtgaataagtg 77  Q
    |||||||||||||||||||||||  ||||||||||||||    
T  33359926 ctagtggctagaattcacctttttcaaggtgaataagtg 33359888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 108
Target Start/End: Complemental strand, 36008381 - 36008315
Alignment:
Q  40 tagtggctagaattcaccttttaaaaggtgaataagtgagatgttcggagttcaaatcccggtccctgc 108  Q
    |||||||||||||||||||| |||  |||||||||||| | ||||||| |||| || ||||| ||||||    
T  36008381 tagtggctagaattcaccttataa--ggtgaataagtggggtgttcggggttcgaaccccggcccctgc 36008315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 54265035 - 54264990
Alignment:
Q  41 agtggctagaattcaccttttaaaaggtgaataagtgagatgttcg 86  Q
    ||||||||||||||| |||||  |||||||||||||||| ||||||    
T  54265035 agtggctagaattcatctttttcaaggtgaataagtgaggtgttcg 54264990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 54854165 - 54854218
Alignment:
Q  39 ctagtggctagaattcaccttttaaaaggtgaataagtgagatgttcggagttc 92  Q
    |||||||||||||||||| ||||  |||||||||||||| ||||| ||| ||||    
T  54854165 ctagtggctagaattcacttttttcaaggtgaataagtgtgatgtccggggttc 54854218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 6054211 - 6054264
Alignment:
Q  39 ctagtggctagaattcaccttttaaaaggtgaataagtgagatgttcggagttc 92  Q
    ||||||| |||||||||||||||  |||||||||||||||| ||||||||||||    
T  6054211 ctagtggttagaattcacctttttcaaggtgaataagtgaggtgttcggagttc 6054264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 40160844 - 40160788
Alignment:
Q  39 ctagtggctagaattcaccttttaaaaggtgaataagtgagatgttcggagttcaaa 95  Q
    ||||||||||||||||||||||| ||||||||||||||| | ||| ||| |||||||    
T  40160844 ctagtggctagaattcacctttttaaaggtgaataagtggggtgtccggggttcaaa 40160788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 21248976 - 21249045
Alignment:
Q  39 ctagtggctagaattcaccttttaaaaggtgaataagtgagatgttcggagttcaaatcccggtccctgc 108  Q
    |||||||||||||||||||||||  |||||||||||||| | ||||| | |||| || ||||| ||||||    
T  21248976 ctagtggctagaattcacctttttcaaggtgaataagtggggtgttcagggttcgaaccccggcccctgc 21249045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 8493330 - 8493280
Alignment:
Q  45 gctagaattcaccttttaaaaggtgaataagtgagatgttcggagttcaaatc 97  Q
    |||||||||||||||||||  ||||||||||| || |||||||||||| ||||    
T  8493330 gctagaattcaccttttaa--ggtgaataagtaaggtgttcggagttcgaatc 8493280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 44592109 - 44592061
Alignment:
Q  38 gctagtggctagaattcaccttttaaaaggtgaataagtgagatgttcgg 87  Q
    ||||||||||| ||||||||||||  ||||||||||||| ||||||||||    
T  44592109 gctagtggctataattcacctttttcaaggtgaataagt-agatgttcgg 44592061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 100
Target Start/End: Complemental strand, 53472731 - 53472673
Alignment:
Q  40 tagtggctagaattcaccttttaaaaggtgaataagtgagatgttcggagttcaaatcccg 100  Q
    |||||||||||||||||||| ||||  ||||||||||| | |||| |||||||||| ||||    
T  53472731 tagtggctagaattcaccttataaa--gtgaataagtggggtgtttggagttcaaaccccg 53472673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 39208855 - 39208895
Alignment:
Q  39 ctagtggctagaattcaccttttaaaaggtgaataagtgag 79  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  39208855 ctagtggctagaattcacctttttaaaggtgaataagtgag 39208895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 79
Target Start/End: Original strand, 27821892 - 27821931
Alignment:
Q  40 tagtggctagaattcaccttttaaaaggtgaataagtgag 79  Q
    ||||||||||||||||||||||  ||||||||||||||||    
T  27821892 tagtggctagaattcaccttttttaaggtgaataagtgag 27821931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 41 - 79
Target Start/End: Original strand, 22847250 - 22847288
Alignment:
Q  41 agtggctagaattcaccttttaaaaggtgaataagtgag 79  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  22847250 agtggctagaattcaccttttttaaggtgaataagtgag 22847288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 39 - 92
Target Start/End: Complemental strand, 30461643 - 30461592
Alignment:
Q  39 ctagtggctagaattcaccttttaaaaggtgaataagtgagatgttcggagttc 92  Q
    ||||||||||||||||||||| |||  ||||||||||||||||||  |||||||    
T  30461643 ctagtggctagaattcaccttataa--ggtgaataagtgagatgtctggagttc 30461592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 95
Target Start/End: Original strand, 37986853 - 37986909
Alignment:
Q  39 ctagtggctagaattcaccttttaaaaggtgaataagtgagatgttcggagttcaaa 95  Q
    |||||||||||||||||||||||  |||||||||||||| ||||| ||| |||||||    
T  37986853 ctagtggctagaattcacctttttcaaggtgaataagtgggatgtccggggttcaaa 37986909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 6014886 - 6014821
Alignment:
Q  39 ctagtggctagaattcaccttttaaaaggtgaataagtgagatgttcggagttcaaatcccggtccct 106  Q
    ||||||||||||||||||||| ||| |  |||||||||||| ||| ||||||||||| |||| |||||    
T  6014886 ctagtggctagaattcaccttataaga--tgaataagtgaggtgtccggagttcaaaccccgatccct 6014821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 95
Target Start/End: Original strand, 22687867 - 22687923
Alignment:
Q  39 ctagtggctagaattcaccttttaaaaggtgaataagtgagatgttcggagttcaaa 95  Q
    ||||||| |||||||||||||||  |||||||||||||| | ||||||| |||||||    
T  22687867 ctagtggttagaattcacctttttcaaggtgaataagtggggtgttcggggttcaaa 22687923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 40384359 - 40384307
Alignment:
Q  40 tagtggctagaattcaccttttaaaaggtgaataagtgagatgttcggagttc 92  Q
    ||||||||||||||||||||||  |||||||||||||| | ||| ||||||||    
T  40384359 tagtggctagaattcaccttttttaaggtgaataagtggggtgtccggagttc 40384307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 42260707 - 42260759
Alignment:
Q  40 tagtggctagaattcaccttttaaaaggtgaataagtgagatgttcggagttc 92  Q
    |||| ||||||||||| ||||| ||||||||||||||| ||||| ||||||||    
T  42260707 tagtagctagaattcatctttttaaaggtgaataagtgggatgtccggagttc 42260759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 39684347 - 39684288
Alignment:
Q  39 ctagtggctagaattcaccttttaaaaggtgaataagtgagatgttcggagttcaaatcc 98  Q
    ||||||| |||||||||||||||  |||||||||||||| ||||| ||| ||| ||||||    
T  39684347 ctagtggttagaattcaccttttttaaggtgaataagtgggatgtccggggtttaaatcc 39684288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 39760182 - 39760127
Alignment:
Q  41 agtggctagaattcacctt-ttaaaaggtgaataagtgagatgttcggagttcaaa 95  Q
    ||||||||||||||||||| ||| ||||||||||| || ||||||||| |||||||    
T  39760182 agtggctagaattcaccttattataaggtgaataaatgggatgttcggggttcaaa 39760127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 2029116 - 2029175
Alignment:
Q  39 ctagtggctagaattcaccttttaaaaggtgaataagtgagatgttcggagttcaaatcccg 100  Q
    |||||||||||||||||||  ||| |||||||||||||| | ||||||| |||| |||||||    
T  2029116 ctagtggctagaattcacc--ttataaggtgaataagtggggtgttcggggttcgaatcccg 2029175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 32158402 - 32158469
Alignment:
Q  39 ctagtggctagaattcaccttttaaaaggtgaataagtgagatgttcggagttcaaatcccggtccctgc 108  Q
    |||||||||||||||||||  ||| |||||||||||||| | ||||||| |||| || ||||| ||||||    
T  32158402 ctagtggctagaattcacc--ttataaggtgaataagtggggtgttcggggttcgaaccccggcccctgc 32158469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 21017595 - 21017648
Alignment:
Q  43 tggctagaattcacctt-ttaaaaggtgaataagtgagatgttcggagttcaaa 95  Q
    ||||||||||||||||| ||| |||||||||||||| ||||| ||| |||||||    
T  21017595 tggctagaattcaccttattataaggtgaataagtgggatgtccggggttcaaa 21017648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 28768706 - 28768661
Alignment:
Q  39 ctagtggctagaattcaccttttaaaaggtgaataagtgagatgtt 84  Q
    ||||||| |||||||||||||||  |||||| ||||||||||||||    
T  28768706 ctagtggttagaattcacctttttcaaggtggataagtgagatgtt 28768661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 92
Target Start/End: Complemental strand, 34010644 - 34010591
Alignment:
Q  39 ctagtggctagaattcaccttttaaaaggtgaataagtgagatgttcggagttc 92  Q
    |||||| |||||||||||||| || ||||||||||| |||||||| ||| ||||    
T  34010644 ctagtgactagaattcaccttatataaggtgaataaatgagatgtccggggttc 34010591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 640 - 686
Target Start/End: Original strand, 23396236 - 23396282
Alignment:
Q  640 caagaagacgtttataaaattaaaattaatgttaaatgtctctaatc 686  Q
    ||||||||| |||||||| ||||||||||||||||||||||| ||||    
T  23396236 caagaagacatttataaagttaaaattaatgttaaatgtctcgaatc 23396282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 95
Target Start/End: Original strand, 28968679 - 28968725
Alignment:
Q  49 gaattcaccttttaaaaggtgaataagtgagatgttcggagttcaaa 95  Q
    |||||||||||||  |||||||||||||||||||||||| |||||||    
T  28968679 gaattcacctttttcaaggtgaataagtgagatgttcggggttcaaa 28968725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 613 - 669
Target Start/End: Original strand, 10202614 - 10202670
Alignment:
Q  613 taaatagtttataacacttaagagttgcaagaagacgtttataaaattaaaattaat 669  Q
    |||||||||| ||||| ||| ||||| ||||||| |||||||||||||| |||||||    
T  10202614 taaatagtttttaacatttaggagtttcaagaagtcgtttataaaattataattaat 10202670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 86
Target Start/End: Complemental strand, 48007131 - 48007084
Alignment:
Q  39 ctagtggctagaattcaccttttaaaaggtgaataagtgagatgttcg 86  Q
    |||||||||||||||||||||||  |||||||| ||||| ||||||||    
T  48007131 ctagtggctagaattcaccttttgtaaggtgaacaagtgggatgttcg 48007084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 39 - 77
Target Start/End: Original strand, 26734257 - 26734295
Alignment:
Q  39 ctagtggctagaattcaccttttaaaaggtgaataagtg 77  Q
    |||||||||||||||||||||||  ||||||||||||||    
T  26734257 ctagtggctagaattcacctttttcaaggtgaataagtg 26734295  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 20947868 - 20947826
Alignment:
Q  39 ctagtggctagaattcaccttttaaaaggtgaataagtgagatgt 83  Q
    |||||||||||||||||| |||||||  |||||||||||||||||    
T  20947868 ctagtggctagaattcactttttaaa--gtgaataagtgagatgt 20947826  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 30737090 - 30737030
Alignment:
Q  39 ctagtggctagaattcaccttttaaaaggtgaataagtgagatgttcggagttcaaatccc 99  Q
    |||||| ||||||||||| ||||  |||||||||||||| ||||| || ||||||||||||    
T  30737090 ctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatccc 30737030  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 39 - 77
Target Start/End: Complemental strand, 1244678 - 1244640
Alignment:
Q  39 ctagtggctagaattcaccttttaaaaggtgaataagtg 77  Q
    |||||||||||||||||||||||  ||||||||||||||    
T  1244678 ctagtggctagaattcacctttttcaaggtgaataagtg 1244640  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 92
Target Start/End: Complemental strand, 12206607 - 12206554
Alignment:
Q  39 ctagtggctagaattcaccttttaaaaggtgaataagtgagatgttcggagttc 92  Q
    |||||||||||||||||||||||  |||||||||||| | | ||||||| ||||    
T  12206607 ctagtggctagaattcacctttttcaaggtgaataagcggggtgttcggggttc 12206554  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 22538646 - 22538600
Alignment:
Q  39 ctagtggctagaattcaccttttaaaaggtgaataagtgagatgttcgg 87  Q
    |||||||||||||||||||  ||| |||||||||||||||| |||||||    
T  22538646 ctagtggctagaattcacc--ttataaggtgaataagtgaggtgttcgg 22538600  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 39334867 - 39334920
Alignment:
Q  39 ctagtggctagaattcaccttttaaaaggtgaataagtgagatgttcggagttc 92  Q
    |||||||||||||||||||||||  || ||||||||||| |||||  |||||||    
T  39334867 ctagtggctagaattcacctttttcaaagtgaataagtgggatgtctggagttc 39334920  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 629 - 692
Target Start/End: Complemental strand, 20729419 - 20729356
Alignment:
Q  629 cttaagagttgcaagaagacgtttataaaattaaaattaatgttaaatgtctctaatcgatatg 692  Q
    |||||||||| ||||||| |  || |||||||| ||||||||||||||||||||| || |||||    
T  20729419 cttaagagttacaagaagtcacttgtaaaattataattaatgttaaatgtctctattcaatatg 20729356  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 12311390 - 12311432
Alignment:
Q  40 tagtggctagaattcaccttttaaaaggtgaataagtgagatgtt 84  Q
    ||||||||||||||||| ||||||  |||||||||||||||||||    
T  12311390 tagtggctagaattcacattttaa--ggtgaataagtgagatgtt 12311432  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 323 - 380
Target Start/End: Complemental strand, 21908997 - 21908940
Alignment:
Q  323 gacaatcatagtcagaaacacatggaatgcgagctgcattgtcaaataagaagaaaaa 380  Q
    ||||||||  ||||||||||||||||||   |||| ||||||||| ||||||||||||    
T  21908997 gacaatcactgtcagaaacacatggaattttagctacattgtcaagtaagaagaaaaa 21908940  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 26669646 - 26669683
Alignment:
Q  40 tagtggctagaattcaccttttaaaaggtgaataagtg 77  Q
    ||||||||||||||||||||||  ||||||||||||||    
T  26669646 tagtggctagaattcacctttttcaaggtgaataagtg 26669683  T

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Target: scaffold0039 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 39 - 108
Target Start/End: Complemental strand, 101938 - 101871
Alignment:
Q  39 ctagtggctagaattcaccttttaaaaggtgaataagtgagatgttcggagttcaaatcccggtccctgc 108  Q
    ||||||||||||||||||||| |||  |||||||||||| |||||| || |||| || ||||| ||||||    
T  101938 ctagtggctagaattcaccttataa--ggtgaataagtgggatgtttggggttcgaaccccggcccctgc 101871  T

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Target: scaffold0119 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 1147 - 1110
Alignment:
Q  40 tagtggctagaattcaccttttaaaaggtgaataagtg 77  Q
    ||||||||||||||||||||||  ||||||||||||||    
T  1147 tagtggctagaattcacctttttcaaggtgaataagtg 1110  T

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