View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21233_high_71 (Length: 208)
Name: NF21233_high_71
Description: NF21233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21233_high_71 |
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Alignment Details
Target: chr6 (Bit Score: 176; Significance: 5e-95; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 14 - 193
Target Start/End: Complemental strand, 14025051 - 14024872
Alignment:
| Q |
14 |
gagaagaatatgtactgaatgcattcttgacatggaaaggtgtagaacaagtgttcaacaacaatgaattgtctctcctgaaaagcatagatttatccag |
113 |
Q |
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| T |
14025051 |
gagaagaatatgaactgaatgcattcttgacatggaaaggtgtagaacaagtgttcaacaacaatgaattgtctctcctgaaaagcatagatttatccag |
14024952 |
T |
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| Q |
114 |
caatcacttttcagacgagattccacctgaaattgctgatttgatccaattggtctcattgaacttatcaagaaacaact |
193 |
Q |
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| T |
14024951 |
caatcacttttcagacgagattccacctgaaattgctgatttgatccaattggtctcattgaacttatcaagaaacaact |
14024872 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 29 - 193
Target Start/End: Complemental strand, 14014905 - 14014741
Alignment:
| Q |
29 |
tgaatgcattcttgacatggaaaggtgtagaacaagtgttcaacaacaatgaattgtctctcctgaaaagcatagatttatccagcaatcacttttcaga |
128 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||| |||||||||||||||| ||||| |
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| T |
14014905 |
tgaatgcattcttgacatggaaaggtgtagaacaagagttcaacaacaatggcttgtctcttctgaaaagcatagatctatccagcaatcacttctcaga |
14014806 |
T |
|
| Q |
129 |
cgagattccacctgaaattgctgatttgatccaattggtctcattgaacttatcaagaaacaact |
193 |
Q |
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| T |
14014805 |
agagattccaccagaaatagcaaatttgattcaattggtctcgttgaacttatcaagaaacaact |
14014741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 15 - 193
Target Start/End: Complemental strand, 14110245 - 14110067
Alignment:
| Q |
15 |
agaagaatatgtactgaatgcattcttgacatggaaaggtgtagaacaagtgttcaacaacaatgaattgtctctcctgaaaagcatagatttatccagc |
114 |
Q |
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| T |
14110245 |
agaagactatgaattgagtgcattcttgacatggaaaggtgtagaacaagagtttaacaacaatggcttgtatcttctaaaaagcatagacctatccagc |
14110146 |
T |
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| Q |
115 |
aatcacttttcagacgagattccacctgaaattgctgatttgatccaattggtctcattgaacttatcaagaaacaact |
193 |
Q |
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|||||||| ||||| |||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
14110145 |
aatcacttctcagaagagattccacctgaaattgcagatttgattcaattggtctcgttgaacttatcaagaaacaact |
14110067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 29 - 193
Target Start/End: Original strand, 13875610 - 13875774
Alignment:
| Q |
29 |
tgaatgcattcttgacatggaaaggtgtagaacaagtgttcaacaacaatgaattgtctctcctgaaaagcatagatttatccagcaatcacttttcaga |
128 |
Q |
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|||||||| |||| |||||||||||||||||||||||||||||||||||| |||||| ||| || ||||| ||||| | || ||||||||||||||| | |
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| T |
13875610 |
tgaatgcactcttaacatggaaaggtgtagaacaagtgttcaacaacaatcaattgtttcttctaaaaagtgtagatctctcgagcaatcacttttcaca |
13875709 |
T |
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| Q |
129 |
cgagattccacctgaaattgctgatttgatccaattggtctcattgaacttatcaagaaacaact |
193 |
Q |
| |
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| T |
13875710 |
agagattccacctgaaatagctaatttgattcaattggtctcattgaacttatcaagaaataact |
13875774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 35 - 193
Target Start/End: Complemental strand, 14022467 - 14022309
Alignment:
| Q |
35 |
cattcttgacatggaaaggtgtagaacaagtgttcaacaacaatgaattgtctctcctgaaaagcatagatttatccagcaatcacttttcagacgagat |
134 |
Q |
| |
|
||||||| ||||||||||||||||| ||||| ||||||||||||||||||| || || |||||||||||| | || |||||||||||||||| ||||| |
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| T |
14022467 |
cattcttaacatggaaaggtgtagaccaagtattcaacaacaatgaattgttgcttctaaaaagcatagatctctcaagcaatcacttttcaggagagat |
14022368 |
T |
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| Q |
135 |
tccacctgaaattgctgatttgatccaattggtctcattgaacttatcaagaaacaact |
193 |
Q |
| |
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|||||||||||| || ||||||| |||||||||||||||||||||||||||||||||| |
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| T |
14022367 |
tccacctgaaatagcgaatttgattcaattggtctcattgaacttatcaagaaacaact |
14022309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 33 - 191
Target Start/End: Original strand, 13473302 - 13473460
Alignment:
| Q |
33 |
tgcattcttgacatggaaaggtgtagaacaagtgttcaacaacaatgaattgtctctcctgaaaagcatagatttatccagcaatcacttttcagacgag |
132 |
Q |
| |
|
||||||||| || ||||||||||||||| || ||||||||||||||| ||||| ||| | |||||||||||| |||| ||||||||||||||||| ||| |
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| T |
13473302 |
tgcattctttacctggaaaggtgtagaagaactgttcaacaacaatggattgtttcttttaaaaagcatagatctatcaagcaatcacttttcagaggag |
13473401 |
T |
|
| Q |
133 |
attccacctgaaattgctgatttgatccaattggtctcattgaacttatcaagaaacaa |
191 |
Q |
| |
|
||||||| |||||| || |||||||| ||||||||||| |||||||||||||||||||| |
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| T |
13473402 |
attccacttgaaatagcagatttgattcaattggtctctttgaacttatcaagaaacaa |
13473460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 32 - 193
Target Start/End: Complemental strand, 14047156 - 14046995
Alignment:
| Q |
32 |
atgcattcttgacatggaaaggtgtagaacaagtgttcaacaacaatgaattgtctctcctgaaaagcatagatttatccagcaatcacttttcagacga |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||| || ||| | ||||| | || |||||||| |||||||| || |
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| T |
14047156 |
atgcattcttgacatggaaaggtgtagaacatgtgttcaacaacaatggattggttcttctaaaagtcgtagatctttcaagcaatcatttttcagaaga |
14047057 |
T |
|
| Q |
132 |
gattccacctgaaattgctgatttgatccaattggtctcattgaacttatcaagaaacaact |
193 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
14047056 |
aattccacctgaaattgcagatttgattcaattggtctcattgaatttatcaagaaacaact |
14046995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 29 - 193
Target Start/End: Original strand, 13863140 - 13863304
Alignment:
| Q |
29 |
tgaatgcattcttgacatggaaaggtgtagaacaagtgttcaacaacaat-gaattgtctctcctgaaaagcatagatttatccagcaatcacttttcag |
127 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||||| ||||||| || |||| ||| || |||||||||||| |||| |||||||||||||| | |
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| T |
13863140 |
tgaatgcattgttgacatggaaaggtgtagaacaactgttcatcaacaatcgatttgt-tcttctaaaaagcatagatctatcaagcaatcacttttcgg |
13863238 |
T |
|
| Q |
128 |
acgagattccacctgaaattgctgatttgatccaattggtctcattgaacttatcaagaaacaact |
193 |
Q |
| |
|
| ||||||||||||||||| || ||||||| |||||||||||| | || |||||||||||||||| |
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|
| T |
13863239 |
aagagattccacctgaaatagcaaatttgattcaattggtctcactaaatttatcaagaaacaact |
13863304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 29 - 193
Target Start/End: Complemental strand, 13932118 - 13931954
Alignment:
| Q |
29 |
tgaatgcattcttgacatggaaaggtgtagaacaagtgttcaacaacaatgaattgtctctcctgaaaagcatagatttatccagcaatcacttttcaga |
128 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| || ||||||||||||| |||| ||| | ||| ||||||| | || || ||||| |||||||| |
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| T |
13932118 |
tgaatgcattgttgacatggaaaggtgtagaacatgtcttcaacaacaatggattggttcttttaaaagtcatagatctctcaagtaatcatttttcaga |
13932019 |
T |
|
| Q |
129 |
cgagattccacctgaaattgctgatttgatccaattggtctcattgaacttatcaagaaacaact |
193 |
Q |
| |
|
||||||||||||||||| || |||||||| ||||||||||||||||| |||||||||||||||| |
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|
| T |
13932018 |
agagattccacctgaaatagcagatttgattcaattggtctcattgaatttatcaagaaacaact |
13931954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 40 - 193
Target Start/End: Complemental strand, 14084414 - 14084261
Alignment:
| Q |
40 |
ttgacatggaaaggtgtagaacaagtgttcaacaacaatgaattgtctctcctgaaaagcatagatttatccagcaatcacttttcagacgagattccac |
139 |
Q |
| |
|
||||| |||||||||||||||||| ||||||| ||||||| ||| | ||| || ||||||||||| | || |||||||||||||||| |||||||||| |
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|
| T |
14084414 |
ttgacttggaaaggtgtagaacaaatgttcaaaaacaatggattatttcttctaaaaagcatagacctctcaagcaatcacttttcaggagagattccac |
14084315 |
T |
|
| Q |
140 |
ctgaaattgctgatttgatccaattggtctcattgaacttatcaagaaacaact |
193 |
Q |
| |
|
|||||| || ||||||| ||||||||||| ||||| |||||||||||||||| |
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|
| T |
14084314 |
atgaaatagcaaatttgattcaattggtctctttgaatttatcaagaaacaact |
14084261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 29 - 193
Target Start/End: Original strand, 13893314 - 13893478
Alignment:
| Q |
29 |
tgaatgcattcttgacatggaaaggtgtagaacaagtgttcaacaacaatgaattgtctctcctgaaaagcatagatttatccagcaatcacttttcaga |
128 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| | ||||||||||||| |||| ||| || ||||| |||||| | || ||||||||||||||| | |
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|
| T |
13893314 |
tgaatgcattcttgatgtggaaaggtgtagaacaatttttcaacaacaatggattgcttcttctaaaaagtatagatctctcaagcaatcacttttcaca |
13893413 |
T |
|
| Q |
129 |
cgagattccacctgaaattgctgatttgatccaattggtctcattgaacttatcaagaaacaact |
193 |
Q |
| |
|
|||||||||||||||||| || |||| | ||||| |||||| | || |||||||||||||||| |
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|
| T |
13893414 |
cgagattccacctgaaatagcaactttggttcaattagtctcactaaatttatcaagaaacaact |
13893478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 33 - 146
Target Start/End: Complemental strand, 13911572 - 13911460
Alignment:
| Q |
33 |
tgcattcttgacatggaaaggtgtagaacaagtgttcaacaacaatgaattgtctctcctgaaaagcatagatttatccagcaatcacttttcagacgag |
132 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||||||| | |||| ||| || ||||| |||||| | || ||||||||||||||| | ||| |
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|
| T |
13911572 |
tgcattcttgatgtggaaaggtgtagaacaattgttcaacaacaa-ggattgcttcttctaaaaagtatagatctctcaagcaatcacttttcacaagag |
13911474 |
T |
|
| Q |
133 |
attccacctgaaat |
146 |
Q |
| |
|
|||||||||||||| |
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|
| T |
13911473 |
attccacctgaaat |
13911460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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